mRNA_P-wetherbeei_contig11626.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11626.1.1
Unique NamemRNA_P-wetherbeei_contig11626.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11626.1.1 vs. uniprot
Match: D7FZM3_ECTSI (HABP4_PAI-RBP1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZM3_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 5.170e-22
Identity = 75/179 (41.90%), Postives = 94/179 (52.51%), Query Frame = 1 
Query:    1 GREMKKSGGGGHNWGTEVEAEAPSAT---------DAAGGWGGAVEAPEAPAGPVDALA--AATEVGPAAEEEAXXXXXXXXXXXXXVVTMEEYEAEKAAKRGELDELVGSVSIKTVDRSEFGDMPALKKTDIEEKDFMGGKGAKKAKAKTQQRTKERFVDVGFRAPPVERPSGGRGEG 504
            GRE+KKSGGGG NWG +  A   +A          D   GWG    A      P+       AT+ G + +E+               +T++E++A   AK  EL +++G VSIKTVD SEF D     K D+EE+ FMGGK  K  K KTQQR KE F DVGFRAP +   SGG G G
Sbjct:  197 GREIKKSGGGGRNWGNDAAAGMDNAAANAENEAEGDQGAGWGANGSAAPNAEDPMTETGDGQATDGGESPKEDTPAPRVPEPEPEEIQLTLDEHQAMLDAKAKELADMIGEVSIKTVDDSEFNDGAIRNKQDVEEEGFMGGKATKTRKVKTQQRAKEVFQDVGFRAPAMN--SGGDGRG 373
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11626.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZM3_ECTSI5.170e-2241.90HABP4_PAI-RBP1 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11626contigP-wetherbeei_contig11626:374..2029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size645
Hectar predicted targeting categoryother localisation
Exons3
Cds size636
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185919.5707757-CDS-P-wetherbeei_contig11626:373..6251683185919.5707757-CDS-P-wetherbeei_contig11626:373..625Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11626 374..625 -
1683185919.580368-CDS-P-wetherbeei_contig11626:1162..13211683185919.580368-CDS-P-wetherbeei_contig11626:1162..1321Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11626 1163..1321 -
1683185919.5892022-CDS-P-wetherbeei_contig11626:1795..20201683185919.5892022-CDS-P-wetherbeei_contig11626:1795..2020Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11626 1796..2020 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185919.6006763-UTR-P-wetherbeei_contig11626:2020..20291683185919.6006763-UTR-P-wetherbeei_contig11626:2020..2029Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11626 2021..2029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11626.1.1prot_P-wetherbeei_contig11626.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11626 374..2020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11626.1.1

>prot_P-wetherbeei_contig11626.1.1 ID=prot_P-wetherbeei_contig11626.1.1|Name=mRNA_P-wetherbeei_contig11626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp
MKKSGGGGHNWGTEVEAEAPSATDAAGGWGGAVEAPEAPAGPVDALAAAT
EVGPAAEEEAAAEPEAEPEPKEEVVTMEEYEAEKAAKRGELDELVGSVSI
KTVDRSEFGDMPALKKTDIEEKDFMGGKGAKKAKAKTQQRTKERFVDVGF
RAPPVERPSGGRGEGRGFRGGRGGEGGRGGGRGFRGGRGEGRGYGGGGGG
YGGVGGYGGGGG
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mRNA from alignment at P-wetherbeei_contig11626:374..2029-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11626.1.1 ID=mRNA_P-wetherbeei_contig11626.1.1|Name=mRNA_P-wetherbeei_contig11626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1656bp|location=Sequence derived from alignment at P-wetherbeei_contig11626:374..2029- (Phaeothamnion wetherbeei SAG_119_79)
GGCCGCGAGATGAAGAAGAGCGGCGGCGGCGGCCACAACTGGGGCACCGA
GGTGGAGGCGGAGGCGCCCTCGGCCACCGACGCCGCCGGCGGCTGGGGCG
GCGCCGTCGAGGCGCCCGAGGCGCCTGCGGGACCCGTCGACGCGCTGGCA
GCCGCTACGGAGGTGGGCCCCGCTGCGGAGGAGGAGGCGGCAGCAGAGCC
CGAGGCCGAGCCCGAGCCCAAGGAGGAGGTAGTTGTGAGTTTTTTTGGCG
TCTAGCTTCGTGTGCCGTAACGATTTGCGATTTGGGTGTGGTGGCGCTTC
TCCATCTGGCCTGCGTGTGCCTGCAGTTTCCGTTTGATAAAATCGTTGGC
TCCGGCATCGTGCCTCTGCATATGTATGTCGTCGTGATGCCGTATCGCTT
TGTTCTTTTATGGAATGCGCGTTAGTTGGTCGCTCCATGCGACGCAGTAT
CCTGCCAGCAGCTTCCCGGCTTACCCGCTTATCGTCCTCTTGCGTTCCTC
TCTGTTTCTTTTTCTCGTTCTTGTTTTCCCTCCTGTTCTCCAACCCGGCC
GTCTGCGCGTTTCTCCTTTTCTTCCCTCCGTCGTCCGTCCTCCATCGCGC
GATTCTTCATCAATCCCGCAATCACATGAAACCAAACGGCAACCGCTCAA
CTCGTCAATCGTCACTTTGCGTGCGCCGCTGCATCGTCAGCCCGAGCCGG
TGCAGAAGACGATGGAGGAGTACGAGGCGGAGAAGGCGGCGAAGCGCGGT
GAGCTGGACGAGCTGGTGGGCAGCGTCAGCATCAAGACTGTCGACCGCTC
CGAGTTCGGCGACATGCCTGCCCTCAAGAAGACCGACATCGAAGAGAAGG
ACTTCATGGGCGGAAAGGTGCGCGCTGAGTCTTATTACTTCTGTCGTGCC
GCCGTTGGTTTTTTGCCTGGCGTGCGTTGCAGGTGGCAGTCCGGCGGTGC
GGCCGGTCTATTCTTTCGTTTCGGCGTGTTTTGTTTTCCGTCTTCGTTTC
GGTTAGCAAGCAAGACCCCATGGGCGGGAAAGGTGCGTGCGGCGGGCGGA
ATGCGGCACGTGTTGCATTGCCTGCTGCGTGGTACGTGGCAGGTCTTGCG
GTGCTGCAGCGCTGCGAGTATCCGTTTCTCTTTGCCGTGTTCCTTCTTTT
GTGTTTCTCTTGCGCGTTTGTGTACCGTCCTCACTCGTGGATTGCGGCGC
TGGGCGCGTGTGTGGTGGACGCTGGGCGCGTGTGTGGTGGACGCTGTTTT
CAGTCGTGGGGGTTGTTTTTTGGGTCCCCGACGGAATTTCTTCCCTCCTT
TTGGATGTGACACGCCTCTGGTCCAAACGAACGGGCACTCTTCGGCACGC
TTTTCTCTAACGTCTGTCTGTTTCGCGCGCCGTTTCTTTCTGATTCAGGA
CAAGGGAGCCAAGAAAGCCAAGGCCAAGACGCAGCAGCGCACGAAGGAGC
GGTTTGTGGACGTCGGATTCCGGGCGCCCCCCGTGGAGCGACCGTCCGGC
GGCCGCGGCGAGGGCCGCGGTTTCCGCGGCGGCCGCGGCGGTGAGGGCGG
CCGCGGAGGTGGCCGCGGGTTCCGTGGCGGCCGTGGAGAGGGCCGGGGGT
ACGGTGGCGGCGGTGGCGGCTACGGCGGCGTTGGCGGGTACGGGGGCGGC
GGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11626:374..2029-

>mRNA_P-wetherbeei_contig11626.1.1 ID=mRNA_P-wetherbeei_contig11626.1.1|Name=mRNA_P-wetherbeei_contig11626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig11626:374..2029- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAAGAGCGGCGGCGGCGGCCACAACTGGGGCACCGAGGTGGAGGC
GGAGGCGCCCTCGGCCACCGACGCCGCCGGCGGCTGGGGCGGCGCCGTCG
AGGCGCCCGAGGCGCCTGCGGGACCCGTCGACGCGCTGGCAGCCGCTACG
GAGGTGGGCCCCGCTGCGGAGGAGGAGGCGGCAGCAGAGCCCGAGGCCGA
GCCCGAGCCCAAGGAGGAGGTAGTTACGATGGAGGAGTACGAGGCGGAGA
AGGCGGCGAAGCGCGGTGAGCTGGACGAGCTGGTGGGCAGCGTCAGCATC
AAGACTGTCGACCGCTCCGAGTTCGGCGACATGCCTGCCCTCAAGAAGAC
CGACATCGAAGAGAAGGACTTCATGGGCGGAAAGGGAGCCAAGAAAGCCA
AGGCCAAGACGCAGCAGCGCACGAAGGAGCGGTTTGTGGACGTCGGATTC
CGGGCGCCCCCCGTGGAGCGACCGTCCGGCGGCCGCGGCGAGGGCCGCGG
TTTCCGCGGCGGCCGCGGCGGTGAGGGCGGCCGCGGAGGTGGCCGCGGGT
TCCGTGGCGGCCGTGGAGAGGGCCGGGGGTACGGTGGCGGCGGTGGCGGC
TACGGCGGCGTTGGCGGGTACGGGGGCGGCGGCGGC
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