mRNA_P-wetherbeei_contig11534.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11534.1.1
Unique NamemRNA_P-wetherbeei_contig11534.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11534.1.1 vs. uniprot
Match: A0A835Z0I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I7_9STRA)

HSP 1 Score: 129 bits (325), Expect = 6.040e-31
Identity = 79/231 (34.20%), Postives = 123/231 (53.25%), Query Frame = 1
Query:   37 WLQDIVLTILTTFGGALVAPTIVGEPPAIFVNELLLPAFLTAWFLIVHMGDTRLTRFLSSPWVKRILTTAAAASTANSICSLTDKGAKKFTKGSILYPTAFFGPWLVGVVRGSAAAFLPLDKGLGALGGGVPFSMQLAAFSAALYQLTANDPYVIGGVVRGMLMPLVGAFGAAIVAPLNVRLIIITLYMTTTFIRSFDSYKDFNVFAPVHHIIYAVTGIPPSGKANGVAAA 729
            W Q +VLT L  FGG +VAP ++G+PP I +N+LL+ A L +W L+V+  +  +   L +P + + L   A    AN  C +     K+   G   YP  F+GP L+G + G A  FLP DKGL ++ GG P+ +Q A + +  + L A+DP+V     R  L P  G + A        R  ++  +     ++++     FN F+P+H + YA++G+   G ANG  AA
Sbjct:   47 WAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSW-LVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKY-YPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHV-----RAALAPYAGDYTAD-----AARACVVAFFAAVATLQTYAG-PHFNPFSPLHRVAYAISGVKAPG-ANGAPAA 263          
BLAST of mRNA_P-wetherbeei_contig11534.1.1 vs. uniprot
Match: D7G2H0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H0_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 6.440e-25
Identity = 72/232 (31.03%), Postives = 120/232 (51.72%), Query Frame = 1
Query:   10 DRNKRQKLPWLQDIVLTILTTFGGALVAPTIVGEPPAIFVNELLLPAFLTAWFLIVHMGDTRLTRFLSSPWVKRILTTAAAASTANSICSLTDKGAKKFTKGSILYPTAFFGPWLVGVVRGSAAAFLPLDKGLGALGGGVPFSMQLAAFSAALYQLTANDPYVIGGVVRGMLMPLVGAF---GAAIVAPLNVRLIIITLYMTTTFIRSFDSYKDFNVFAPVHHIIYAVTGIP 696
            +++  +++ W + +V+T +  FGG ++AP ++G+PP +FVN+L++P     WF + +  +  +   +++P +K+++   +    ANS+C +         K    YP A +GP L+G V G    FLPLDKGL  L  G P+ +Q A + +  + L   DP V   +     + L G     G AIVA     L ++ L  T            FN F PVH+++Y VTG+P
Sbjct:   63 EKDSGKQMFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPLVAVCWF-VSNRAEGPIFALINTPIMKQVILVLSEVFRANSMCGIVVLS-NSILKPGKHYPIALWGPILLGTVGGCGGLFLPLDKGLKGLKNGAPWPLQSAFYGSMFFNLFVYDPNVGPYLRDAAALFLDGDLVVQGRAIVAGF---LCVVALAQTLIS-------PAFNPFTPVHNVVYTVTGVP 282          
BLAST of mRNA_P-wetherbeei_contig11534.1.1 vs. uniprot
Match: A0A7S2UUA1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUA1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.270e-23
Identity = 107/380 (28.16%), Postives = 160/380 (42.11%), Query Frame = 1
Query:   37 WLQDIVLTILTTFGGALVAPTIVGEPPAIFVNELLLPAFLTAWFLIVHMGDTRLTRFLSSPWVKRILTTAAAASTANSICSLTDKGAKKFTKGSILYPTAFFGPWLVGVVRGSAAAFLPLDKGLGALGGGVPFSMQLAAFSAALYQLTANDPYVIGGVVRGMLMPLVGAFGAAIVAP-LNVRLI--IITLYMTTTFIRSFDSYKDF-NVFAPVHHIIYAVTGIPPSGKANGVAAAAAAVPAVPPAAELAARHKKERAFDILRYGAVMAVVASVAVGRSLPADTLAVGGTLKPGEFLGTCTLLPAWRGCQPYVATLGVDGALAVFRGKSP---DDPHRVLQWSSP----APRKASADVHATLAADG-RIAVVSEGKAVWQS 1140
            WL  +VL I   +G   + P ++GEPP  F N+ +    + +WFL  H     + +F S    +  ++  A     N +C   D     F + S  YPT    P ++GV+  +   F PLDKGL  +   VP+++Q+  F A  YQL   D   IG            AF   +V P LN      I+T+  T T +  F S   F N FAPV      V  +  S    G+                           ++R G  +  + + A  + LP + L  G T+  G++L TCT+LPA R C  +V +L   G L VF+  +P   D   +   WSS        KA      T+   G R+ V  +G  +W++
Sbjct:   49 WLHSLVLYIFEAYGAHTLIPLVLGEPPEYFENDFVGFVGIASWFLTQHSPFNIVPKFFSFAPCEYAMSMMALIFLGNVLCQTVDVCNHHF-EASPYYPTPMVAPIVLGVMSVTVDQFFPLDKGLEPISKCVPWNIQIGTFCAVFYQLAIWDDGPIGE-----------AFELYVVGPTLNKETATWIVTVLFTITGLYEFKSGDKFKNPFAPV------VNSVKASSLNEGLGV-------------------------VMRVGFAITALTAFAY-QQLPNEELQSGQTMASGDWLTTCTVLPALRPCNAHVLSLNSTGYLNVFQASTPPKKDKGAKKAIWSSDKSASTASKAPGTGPYTVELSGPRLTVKDDGIVIWEN 384          
BLAST of mRNA_P-wetherbeei_contig11534.1.1 vs. uniprot
Match: R1E2E7_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E2E7_EMIHU)

HSP 1 Score: 74.3 bits (181), Expect = 2.680e-11
Identity = 55/175 (31.43%), Postives = 86/175 (49.14%), Query Frame = 1
Query:    1 AAADRNKRQKLP---WLQDIVLTILTTFGGALVAPTIVGEPPAIFVNELLLPAFLTAWFLIVHMGDTRLTRFLSSPWVKRILTTAAAASTAN--SICS-LTDKGAKKFTKGSIL--YPTAFFGPWLVGVVRGSAAAFLPLDKGLGALGGG-VPFSMQLAAFSAALYQLTANDPYV 498
            AA  RN ++ LP   W   I L +LT+FGG ++ P ++G P A  +NE L+P  + AW  + ++        L SP+ +    +       +  +ICS L  K     + G +      A  GP L G++ G   AF+PL  GL AL G  +P+ +Q +A  +A + L  +D  V
Sbjct:   41 AACCRNLKEALPRLTWFYAIPLAVLTSFGGGIMVPVLLGLPAAPLINEALIPTMIIAWACVQYLHPVL--ALLQSPFGRAASNSGFEVFRYHVLAICSDLASKTLPPVSTGPLAGTLSCALVGPLLCGMIGGCGGAFMPLSNGLKALEGSTIPWRVQSSAVMSAWHHLLTHDAAV 213          
BLAST of mRNA_P-wetherbeei_contig11534.1.1 vs. uniprot
Match: A0A7R9U3G1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3G1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.020e-10
Identity = 47/152 (30.92%), Postives = 76/152 (50.00%), Query Frame = 1
Query:   37 WLQDIVLTILTTFGGALVAPTIVGEPPAIFVNELLLPAFLTAWFLIVHMGDTRLTRFLSSPWVKRI-LTTAAAASTANSICSLTDKGAKKFTKGSILYPTAFFGPWLVGVVRGSAAAFLPLDKGLGALGGGVPFSMQLAAFSAALYQLTAND 489
            W++ ++ T LT FGG  + P I+G+PP    +++L    L AW L  H+  T + R++      R+ L        A   CS  +  AK  +  S LYP    GP ++GV+  +   FLP DKGL A+  G+  + ++    +A + +  ND
Sbjct:   59 WVESLIRTFLTAFGGGTLVPLILGKPPVFLDSDVLFCMTLLAWAL-THL--TPVGRWVEYNQALRLPLNLGGYIFKAVKCCSTVNTAAKVLS-ASALYPIPLMGPIVLGVLGSTGGMFLPFDKGLAAVSKGLSVAFEIPLACSAFFHIIVND 206          
BLAST of mRNA_P-wetherbeei_contig11534.1.1 vs. uniprot
Match: A0A7S2SKA8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.800e-9
Identity = 60/231 (25.97%), Postives = 102/231 (44.16%), Query Frame = 1
Query:   10 DRNKRQKLPWLQDIVLTILTTFGGALVAPTIVGEPPAIFVNELLLPAFLTAWFLIVHMGDTRLTRFLSSPWVKR----ILTTAAAASTANSICSLTDKGAKKFTKGSILYPTAFFGPWLVGVVRGSAAAFLPLDKGLGALGGGVPFSMQLAAFSAALYQLTANDPYVIGGVVRGMLMPLVGAFGAAIVAPLNVRLIIITLYMTTTFIRSFDSYKDFNVFAPVHHIIYAVTG 690
            +R + ++  WL  +V T +  +GG ++ P ++G  P    N+  +   L +W+ +       +T  L +  V R     +  A   +     C +    A      S+ YP   +GP L G + G    F+    G+G +   V + +Q + ++AA Y +T NDP V  G + G L   +   G+    PL  R+  I        ++       FN FAPVHH++Y +TG
Sbjct:   90 ERVQAERYFWLNSLVRTAIACYGGGIIVPMMLGMKPFPIENDAAITLVLFSWWTLHGTPAPLVTWVLDNSTVLRCFLFFIFEALRCNVVVKWCII----ANSMLAPSVHYPIPIWGPILCGGISGCFGGFIL--GGVGLVQSEVSWLIQSSFYAAAYYHITVNDPIV--GPILGKLH--ISGAGSD---PLVARMTCIFALGAVAVLQEAFFGAHFNPFAPVHHLLYKITG 307          
BLAST of mRNA_P-wetherbeei_contig11534.1.1 vs. uniprot
Match: A0A7S4DDZ0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDZ0_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 4.280e-6
Identity = 36/117 (30.77%), Postives = 61/117 (52.14%), Query Frame = 1
Query:  343 GPWLVGVVRGSAAAFLPLDKGLGALGGGVPFSMQLAAFSAALYQLTANDPYVIGGVVRGMLMPLVGAFGAAIVAPLNVRLIIITLYMTTTFIRS-FDSYKDFNVFAPVHHIIYAVTG 690
            GP L+G++  S+  F+P+ KGL  +   VP+++Q    SA  Y +   D YV+G  VR  ++          +  L  R ++I  ++    + + + S+   N FAPVH ++Y VTG
Sbjct:    3 GPVLIGIIATSSGNFIPISKGLKQIEKAVPWNIQCGIISAIFYHVAIFDDYVVGATVRNYIV-------GHQLDRLTARFLVIAFFVVMGQVHTRYGSHV--NPFAPVHKVLYRVTG 110          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11534.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835Z0I7_9STRA6.040e-3134.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G2H0_ECTSI6.440e-2531.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UUA1_9STRA2.270e-2328.16Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
R1E2E7_EMIHU2.680e-1131.43Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7R9U3G1_9STRA1.020e-1030.92Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2SKA8_9STRA1.800e-925.97Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4DDZ0_HETAK4.280e-630.77Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11534contigP-wetherbeei_contig11534:20..1285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G2H0
PFAMsTRIC
Model size1266
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.06e-25
EggNOG OGs2BW3U@1|root,2SEWS@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-23_000830.1
Cds size1266
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.8554056-CDS-P-wetherbeei_contig11534:19..12851683185915.8554056-CDS-P-wetherbeei_contig11534:19..1285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11534 20..1285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11534.1.1prot_P-wetherbeei_contig11534.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11534 20..1285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11534.1.1

>prot_P-wetherbeei_contig11534.1.1 ID=prot_P-wetherbeei_contig11534.1.1|Name=mRNA_P-wetherbeei_contig11534.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=422bp
AAADRNKRQKLPWLQDIVLTILTTFGGALVAPTIVGEPPAIFVNELLLPA
FLTAWFLIVHMGDTRLTRFLSSPWVKRILTTAAAASTANSICSLTDKGAK
KFTKGSILYPTAFFGPWLVGVVRGSAAAFLPLDKGLGALGGGVPFSMQLA
AFSAALYQLTANDPYVIGGVVRGMLMPLVGAFGAAIVAPLNVRLIIITLY
MTTTFIRSFDSYKDFNVFAPVHHIIYAVTGIPPSGKANGVAAAAAAVPAV
PPAAELAARHKKERAFDILRYGAVMAVVASVAVGRSLPADTLAVGGTLKP
GEFLGTCTLLPAWRGCQPYVATLGVDGALAVFRGKSPDDPHRVLQWSSPA
PRKASADVHATLAADGRIAVVSEGKAVWQSTIAAAPAGGHRRPPGAPFHA
NLRPDGTLAVVEGGSDVWVSA*
back to top

mRNA from alignment at P-wetherbeei_contig11534:20..1285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11534.1.1 ID=mRNA_P-wetherbeei_contig11534.1.1|Name=mRNA_P-wetherbeei_contig11534.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1266bp|location=Sequence derived from alignment at P-wetherbeei_contig11534:20..1285+ (Phaeothamnion wetherbeei SAG_119_79)
GCTGCCGCCGACCGCAACAAGCGCCAAAAGCTGCCGTGGCTGCAGGACAT CGTCCTGACCATCCTCACCACCTTTGGCGGCGCGCTGGTGGCGCCGACCA TCGTGGGGGAGCCGCCCGCTATCTTTGTCAACGAGCTGCTGCTGCCGGCC TTTCTCACCGCCTGGTTTCTGATCGTGCACATGGGCGACACCCGCCTGAC GCGGTTTCTCTCGAGCCCCTGGGTCAAACGGATTTTGACGACGGCCGCCG CCGCCTCGACGGCGAACAGCATCTGCAGCCTGACGGACAAGGGCGCCAAG AAGTTCACCAAGGGCAGCATCCTCTACCCGACGGCGTTCTTTGGCCCGTG GCTCGTCGGTGTCGTCCGCGGCTCAGCCGCTGCCTTCCTGCCGCTCGACA AGGGACTCGGCGCTCTCGGCGGCGGCGTCCCGTTCTCCATGCAGCTTGCC GCTTTCTCCGCCGCCCTCTACCAGCTGACCGCCAACGACCCGTATGTCAT CGGCGGCGTCGTGCGCGGCATGCTGATGCCGCTCGTCGGCGCCTTCGGCG CGGCCATCGTGGCGCCGCTCAACGTCCGCCTGATCATCATCACGCTCTAC ATGACCACAACCTTTATCCGCAGCTTCGACTCCTACAAAGACTTCAACGT CTTTGCGCCGGTGCACCACATCATTTATGCCGTGACTGGCATTCCCCCCA GCGGCAAGGCCAACGGCGTCGCGGCCGCCGCCGCCGCGGTGCCCGCCGTT CCGCCGGCCGCTGAGCTCGCAGCGCGCCACAAGAAGGAGCGCGCCTTCGA CATTCTCCGCTACGGCGCAGTCATGGCCGTCGTGGCATCGGTCGCCGTCG GCCGGTCGCTGCCGGCCGACACGCTGGCGGTCGGCGGCACGCTCAAACCC GGCGAGTTCCTGGGCACGTGCACACTGCTGCCAGCGTGGCGCGGCTGCCA GCCGTACGTGGCGACGCTCGGCGTCGATGGCGCGCTCGCCGTCTTCCGTG GCAAGAGCCCCGACGACCCACACCGCGTCCTTCAGTGGTCCTCGCCAGCG CCACGCAAGGCGAGCGCGGACGTACACGCGACACTGGCCGCGGACGGCCG CATCGCGGTGGTGTCGGAGGGCAAGGCGGTCTGGCAGAGCACGATCGCTG CCGCACCCGCTGGCGGACATCGGCGCCCGCCGGGGGCGCCGTTCCACGCC AACCTGCGGCCCGACGGCACGCTGGCCGTAGTGGAGGGCGGTTCCGACGT CTGGGTCAGCGCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11534:20..1285+

>mRNA_P-wetherbeei_contig11534.1.1 ID=mRNA_P-wetherbeei_contig11534.1.1|Name=mRNA_P-wetherbeei_contig11534.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1266bp|location=Sequence derived from alignment at P-wetherbeei_contig11534:20..1285+ (Phaeothamnion wetherbeei SAG_119_79)
GCTGCCGCCGACCGCAACAAGCGCCAAAAGCTGCCGTGGCTGCAGGACAT
CGTCCTGACCATCCTCACCACCTTTGGCGGCGCGCTGGTGGCGCCGACCA
TCGTGGGGGAGCCGCCCGCTATCTTTGTCAACGAGCTGCTGCTGCCGGCC
TTTCTCACCGCCTGGTTTCTGATCGTGCACATGGGCGACACCCGCCTGAC
GCGGTTTCTCTCGAGCCCCTGGGTCAAACGGATTTTGACGACGGCCGCCG
CCGCCTCGACGGCGAACAGCATCTGCAGCCTGACGGACAAGGGCGCCAAG
AAGTTCACCAAGGGCAGCATCCTCTACCCGACGGCGTTCTTTGGCCCGTG
GCTCGTCGGTGTCGTCCGCGGCTCAGCCGCTGCCTTCCTGCCGCTCGACA
AGGGACTCGGCGCTCTCGGCGGCGGCGTCCCGTTCTCCATGCAGCTTGCC
GCTTTCTCCGCCGCCCTCTACCAGCTGACCGCCAACGACCCGTATGTCAT
CGGCGGCGTCGTGCGCGGCATGCTGATGCCGCTCGTCGGCGCCTTCGGCG
CGGCCATCGTGGCGCCGCTCAACGTCCGCCTGATCATCATCACGCTCTAC
ATGACCACAACCTTTATCCGCAGCTTCGACTCCTACAAAGACTTCAACGT
CTTTGCGCCGGTGCACCACATCATTTATGCCGTGACTGGCATTCCCCCCA
GCGGCAAGGCCAACGGCGTCGCGGCCGCCGCCGCCGCGGTGCCCGCCGTT
CCGCCGGCCGCTGAGCTCGCAGCGCGCCACAAGAAGGAGCGCGCCTTCGA
CATTCTCCGCTACGGCGCAGTCATGGCCGTCGTGGCATCGGTCGCCGTCG
GCCGGTCGCTGCCGGCCGACACGCTGGCGGTCGGCGGCACGCTCAAACCC
GGCGAGTTCCTGGGCACGTGCACACTGCTGCCAGCGTGGCGCGGCTGCCA
GCCGTACGTGGCGACGCTCGGCGTCGATGGCGCGCTCGCCGTCTTCCGTG
GCAAGAGCCCCGACGACCCACACCGCGTCCTTCAGTGGTCCTCGCCAGCG
CCACGCAAGGCGAGCGCGGACGTACACGCGACACTGGCCGCGGACGGCCG
CATCGCGGTGGTGTCGGAGGGCAAGGCGGTCTGGCAGAGCACGATCGCTG
CCGCACCCGCTGGCGGACATCGGCGCCCGCCGGGGGCGCCGTTCCACGCC
AACCTGCGGCCCGACGGCACGCTGGCCGTAGTGGAGGGCGGTTCCGACGT
CTGGGTCAGCGCGTGA
back to top