mRNA_P-wetherbeei_contig11261.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11261.1.1
Unique NamemRNA_P-wetherbeei_contig11261.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11261.1.1 vs. uniprot
Match: A0A7Z9UEA7_9BACT (50S ribosomal protein L15 n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UEA7_9BACT)

HSP 1 Score: 173 bits (439), Expect = 2.600e-53
Identity = 89/130 (68.46%), Postives = 106/130 (81.54%), Query Frame = 1
Query:   10 RKRVARGGSRGAQSGRGHKGQGSRSGGSKGPGFEGGQTPWYRRLPHYRGFKNPFRTDYQEVKLSQLEEFENGATINPETLIEKKVLRNLNKPIKLLGNGSLTKKLTVHLHAATSSAKAAVEAAGGKVEVI 399
            R+RV RGG  G   GRG+ GQ SRSGG+K PGFEGGQTPWYRRLP YRGFKNPFRT+YQEV LS LE F+  +T+NPE+L+EK  ++N+ +PIK+LGNG LTK LTV+LH  T+SAKAA+E AGGK EVI
Sbjct:   16 RRRVCRGGKLGKTGGRGYNGQKSRSGGTKYPGFEGGQTPWYRRLPKYRGFKNPFRTEYQEVSLSDLETFDAKSTVNPESLLEKGFVKNIRQPIKVLGNGELTKNLTVNLHGFTASAKAAIEGAGGKAEVI 145          
BLAST of mRNA_P-wetherbeei_contig11261.1.1 vs. uniprot
Match: A0A7X9AG43_9BURK (50S ribosomal protein L15 n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AG43_9BURK)

HSP 1 Score: 168 bits (426), Expect = 2.550e-51
Identity = 89/131 (67.94%), Postives = 109/131 (83.21%), Query Frame = 1
Query:   10 RKRVARG-GSRGAQSGRGHKGQGSRSGGSKGPGFEGGQTPWYRRLPHYRGFKNPFRTDYQEVKLSQLEEFENGATINPETLIEKKVLRNLNKPIKLLGNGSLTKKLTVHLHAATSSAKAAVEAAGGKVEVI 399
            RKRV RG GS+   +GRG KGQ SRSGG+KGPGFEGGQTPWYRRLP +RGFKNPFRT Y EV L  LE FE+G T+ PE L E+ +++NLN+P+K+LGNG+L++KLTV LHA T++A+AA+E AGGKVEVI
Sbjct:   16 RKRVGRGHGSQVKTAGRGQKGQSSRSGGTKGPGFEGGQTPWYRRLPKFRGFKNPFRTVYAEVALGSLEVFEDGQTVTPELLRERGLIKNLNRPVKVLGNGTLSRKLTVALHAFTATARAAIEEAGGKVEVI 146          
BLAST of mRNA_P-wetherbeei_contig11261.1.1 vs. uniprot
Match: A0A355TRM1_9BACT (50S ribosomal protein L15 n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TRM1_9BACT)

HSP 1 Score: 150 bits (380), Expect = 2.590e-44
Identity = 82/135 (60.74%), Postives = 101/135 (74.81%), Query Frame = 1
Query:    1 RKARKRVARGGSRGA--QSGRGHKGQGSRSGGSKGPGFEGGQTPWYRRLPHYRGFKNPFRTDYQEVKLSQLEEFENGATINPETLIEKKVLRNLNKPIKLLGNGSLTKKLTVHLHAATSSAKAAVEAAGGKVEVI 399
            R++RKRVARG   G+   +GRG  GQGSRSGG K PGFEGGQTPWYRRLP +RGFKNPFR  + E+ +  LE F +G T++P  L+   +++NLN PIK+LGNGSLTKKLTV LHA T+S+K A+   GG VE I
Sbjct:   13 RRSRKRVARGHGCGSVKTAGRGSNGQGSRSGGLKAPGFEGGQTPWYRRLPKFRGFKNPFRVIFTEISVGSLERFNDGDTVDPLALLSVGLVKNLNNPIKVLGNGSLTKKLTVQLHAFTASSKEAITKVGGTVEEI 147          
BLAST of mRNA_P-wetherbeei_contig11261.1.1 vs. uniprot
Match: UPI001924F6DE (50S ribosomal protein L15 n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001924F6DE)

HSP 1 Score: 126 bits (317), Expect = 3.340e-35
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 1
Query:   16 RVARGGSRGAQSGRGHKGQGSRSGGSKGPGFEGGQTPWYRRLPHYRGFKNPFRTDYQEVKLSQLEEFENGATINPETLIEKKVLRNLNKPIKLLG 300
            RV RGG  G   GRG+ GQ SRSGG+KGPGFEGGQTPW+RRLP YRGFKNPFRT+YQEV LS LE F+  +T++ +TL EK +++NL+ P+K+LG
Sbjct:   18 RVCRGGKHGKTGGRGYNGQNSRSGGTKGPGFEGGQTPWHRRLPKYRGFKNPFRTEYQEVSLSSLEAFDAKSTVDVQTLKEKGIVKNLHLPVKVLG 112          
BLAST of mRNA_P-wetherbeei_contig11261.1.1 vs. uniprot
Match: A0A2E9A3E3_9CHLR (50S ribosomal protein L15 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E9A3E3_9CHLR)

HSP 1 Score: 126 bits (316), Expect = 1.340e-34
Identity = 73/132 (55.30%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    4 KARKRVARGGSRG--AQSGRGHKGQGSRSGGSKGPGFEGGQTPWYRRLPHYRGFKNPFRTDYQEVKLSQLEEFENGATINPETLIEKKVLRNLNKPIKLLGNGSLTKKLTVHLHAATSSAKAAVEAAGGKVE 393
            KARKRV RG + G  + SGRG KGQ SRSGG   PGFEGGQ P +RRLP  RGF N FRTDY  V +  LE FENG  I PE L++  +++     IK+LG+G L+K L VH H  + SAK  +E+AGGK+E
Sbjct:   13 KARKRVGRGDASGYGSYSGRGIKGQNSRSGGGVRPGFEGGQLPLFRRLPRIRGFTNIFRTDYSVVNVEHLETFENGTDITPELLVQVGLVKKEKSLIKILGSGELSKSLNVHAHKFSGSAKNKIESAGGKIE 144          
BLAST of mRNA_P-wetherbeei_contig11261.1.1 vs. uniprot
Match: A0A3S9T2I1_9FIRM (50S ribosomal protein L15 n=1 Tax=Anoxybacter fermentans TaxID=1323375 RepID=A0A3S9T2I1_9FIRM)

HSP 1 Score: 125 bits (314), Expect = 2.470e-34
Identity = 75/133 (56.39%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 RKARKRVARGGSRGAQSGRGHKGQGSRSGGSKGPGFEGGQTPWYRRLPHYRGFKNPFRTDYQEVKLSQLEEFENGATINPETLIEKKVLRNLNKPIKLLGNGSLTKKLTVHLHAATSSAKAAVEAAGGKVEVI 399
            RKARKRV RGG RG  SGRG KGQ +RSGG   PGFEGGQTP +RRLP  RGF N +RT Y EV +  L  F+ G  + PE L+E  V+  L   +K+LG+G LTK LTV  H  + SA   +E AGGK EVI
Sbjct:   13 RKARKRVGRGGKRGYTSGRGSKGQNARSGGGVRPGFEGGQTPLFRRLPK-RGFNNIWRTRYAEVNVRSLNRFDAGTEVTPELLLETGVISKLYDGVKVLGDGELTKPLTVKAHRFSKSAIEKIEGAGGKAEVI 144          
BLAST of mRNA_P-wetherbeei_contig11261.1.1 vs. uniprot
Match: A0A389M522_9FIRM (50S ribosomal protein L15 n=1 Tax=Erysipelotrichaceae bacterium TaxID=2049044 RepID=A0A389M522_9FIRM)

HSP 1 Score: 125 bits (314), Expect = 2.620e-34
Identity = 73/133 (54.89%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 RKARKRVARGGSRGA--QSGRGHKGQGSRSGGSKGPGFEGGQTPWYRRLPHYRGFKNPFRTDYQEVKLSQLEEFENGATINPETLIEKKVLRNLNKPIKLLGNGSLTKKLTVHLHAATSSAKAAVEAAGGKVE 393
            R+ RKRV RG + G    +GRGHKGQ +RSGG   PGFEGGQTP +RR+P  RGF N FR ++  V L  L  FE+G  + PE LIEK+++R L   +K+LGNG LTKKLTV  H  + SAK A++ AGG VE
Sbjct:   13 RRPRKRVGRGPASGTGKTAGRGHKGQNARSGGGVRPGFEGGQTPLFRRIPK-RGFTNIFRKEFAIVNLETLNVFEDGTIVTPELLIEKRIVRKLESGVKILGNGELTKKLTVKAHKFSDSAKTAIQKAGGTVE 144          
BLAST of mRNA_P-wetherbeei_contig11261.1.1 vs. uniprot
Match: A0A7C3JSZ8_9DELT (50S ribosomal protein L15 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C3JSZ8_9DELT)

HSP 1 Score: 125 bits (314), Expect = 2.950e-34
Identity = 75/134 (55.97%), Postives = 91/134 (67.91%), Query Frame = 1
Query:    4 KARKRVARG--GSRGAQSGRGHKGQGSRSGGSKGPGFEGGQTPWYRRLPHYRGFKNPFRTDYQEVKLSQLEEFENGATINPETLIEKKVLRNLNKPIKLLGNGSLTKKLTVHLHAATSSAKAAVEAAGGKVEVI 399
            K RKRV RG     G  +GRGHKGQG+RSGG+  PGFEGGQ P  RRLP  RGF NPFR     V L QLE FE G  + PE L EK ++R  ++ +K+LG+GSLTK LTV  H  + +AKA +EAAGG+ EV+
Sbjct:   14 KERKRVGRGDGSGHGKTAGRGHKGQGARSGGNVAPGFEGGQMPLQRRLPK-RGFHNPFRVAVAVVNLKQLETFEAGTEVTPEMLAEKGLVRRRDRLVKVLGDGSLTKALTVKAHRFSDAAKAKIEAAGGEAEVL 146          
BLAST of mRNA_P-wetherbeei_contig11261.1.1 vs. uniprot
Match: A0A1B1YZH5_9BACI (50S ribosomal protein L15 n=10 Tax=Fictibacillus TaxID=1329200 RepID=A0A1B1YZH5_9BACI)

HSP 1 Score: 124 bits (311), Expect = 7.460e-34
Identity = 78/135 (57.78%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    1 RKARKRVARG--GSRGAQSGRGHKGQGSRSGGSKGPGFEGGQTPWYRRLPHYRGFKNPFRTDYQEVKLSQLEEFENGATINPETLIEKKVLRNLNKPIKLLGNGSLTKKLTVHLHAATSSAKAAVEAAGGKVEVI 399
            RK R RV RG     G  SGRGHKGQ SRSGG   PGFEGGQ P  RRLP  RGF NP R +Y  V L +L  FE G  + PE L+E  V+ NL   IK+LGNG L  KLTV  H  + SAK A+EAAGGK EVI
Sbjct:   13 RKVRNRVGRGIGSGNGKTSGRGHKGQNSRSGGGVRPGFEGGQNPLARRLPK-RGFTNPTRKEYAVVNLEKLVRFEEGTEVTPELLLETGVVSNLKNGIKVLGNGKLEVKLTVKAHKFSVSAKEAIEAAGGKTEVI 146          
BLAST of mRNA_P-wetherbeei_contig11261.1.1 vs. uniprot
Match: A0A6N8CR77_9BACI (50S ribosomal protein L15 n=3 Tax=Terrilactibacillus TaxID=1795633 RepID=A0A6N8CR77_9BACI)

HSP 1 Score: 124 bits (311), Expect = 7.460e-34
Identity = 75/135 (55.56%), Postives = 90/135 (66.67%), Query Frame = 1
Query:    1 RKARKRVARG--GSRGAQSGRGHKGQGSRSGGSKGPGFEGGQTPWYRRLPHYRGFKNPFRTDYQEVKLSQLEEFENGATINPETLIEKKVLRNLNKPIKLLGNGSLTKKLTVHLHAATSSAKAAVEAAGGKVEVI 399
            R ARKRV RG     G  SGRG KGQ SRSGG   PGFEGGQ P  +RLP  RGFKNP R +Y  V L  L +F+ G  + PE L++ +V+R LN  +K+LG G L KKLTV  H  ++SAK A+EAAGG +EVI
Sbjct:   13 RHARKRVGRGYGSGLGKTSGRGQKGQKSRSGGGVRPGFEGGQMPLIQRLPK-RGFKNPTRKEYSLVNLETLSKFDEGTEVTPELLLQNRVIRKLNDGVKVLGQGQLDKKLTVKAHKFSASAKEAIEAAGGNIEVI 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11261.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9UEA7_9BACT2.600e-5368.4650S ribosomal protein L15 n=1 Tax=Phycisphaerales ... [more]
A0A7X9AG43_9BURK2.550e-5167.9450S ribosomal protein L15 n=1 Tax=Burkholderiales ... [more]
A0A355TRM1_9BACT2.590e-4460.7450S ribosomal protein L15 n=1 Tax=bacterium UBP9_U... [more]
UPI001924F6DE3.340e-3565.2650S ribosomal protein L15 n=1 Tax=Escherichia coli... [more]
A0A2E9A3E3_9CHLR1.340e-3455.3050S ribosomal protein L15 n=1 Tax=Chloroflexi bact... [more]
A0A3S9T2I1_9FIRM2.470e-3456.3950S ribosomal protein L15 n=1 Tax=Anoxybacter ferm... [more]
A0A389M522_9FIRM2.620e-3454.8950S ribosomal protein L15 n=1 Tax=Erysipelotrichac... [more]
A0A7C3JSZ8_9DELT2.950e-3455.9750S ribosomal protein L15 n=1 Tax=Deltaproteobacte... [more]
A0A1B1YZH5_9BACI7.460e-3457.7850S ribosomal protein L15 n=10 Tax=Fictibacillus T... [more]
A0A6N8CR77_9BACI7.460e-3455.5650S ribosomal protein L15 n=3 Tax=Terrilactibacill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11261contigP-wetherbeei_contig11261:3..404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1267580.AF6_0127
Preferred namerplO
PFAMsRibosomal_L27A
Model size402
Max annot lvl91061|Bacilli
KEGG koko:K02876
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
Exons1
Evalue8.63e-35
EggNOG OGsCOG0200@1|root,COG0200@2|Bacteria,1V3KE@1239|Firmicutes,4HFPW@91061|Bacilli,21WV2@150247|Anoxybacillus
DescriptionRibosomal protein L15
Cds size402
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185904.6121185-CDS-P-wetherbeei_contig11261:2..4041683185904.6121185-CDS-P-wetherbeei_contig11261:2..404Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11261 3..404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11261.1.1prot_P-wetherbeei_contig11261.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11261 3..404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11261.1.1

>prot_P-wetherbeei_contig11261.1.1 ID=prot_P-wetherbeei_contig11261.1.1|Name=mRNA_P-wetherbeei_contig11261.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
RKARKRVARGGSRGAQSGRGHKGQGSRSGGSKGPGFEGGQTPWYRRLPHY
RGFKNPFRTDYQEVKLSQLEEFENGATINPETLIEKKVLRNLNKPIKLLG
NGSLTKKLTVHLHAATSSAKAAVEAAGGKVEVI*
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mRNA from alignment at P-wetherbeei_contig11261:3..404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11261.1.1 ID=mRNA_P-wetherbeei_contig11261.1.1|Name=mRNA_P-wetherbeei_contig11261.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig11261:3..404+ (Phaeothamnion wetherbeei SAG_119_79)
CGCAAAGCCCGCAAGCGAGTCGCTCGTGGTGGTTCCCGCGGCGCCCAGTC GGGCCGCGGTCATAAAGGTCAAGGTTCTCGCTCGGGCGGATCCAAAGGCC CAGGCTTCGAGGGCGGCCAGACGCCCTGGTATCGCCGCCTGCCCCACTAC CGTGGCTTCAAGAACCCTTTCCGCACGGACTATCAGGAAGTCAAGCTTTC TCAACTCGAAGAGTTTGAGAATGGTGCGACCATCAATCCTGAAACGCTCA TCGAGAAGAAAGTTCTTCGCAATCTCAATAAACCGATCAAGCTTCTGGGT AACGGCAGTCTCACCAAGAAACTCACCGTTCACCTTCATGCAGCCACCTC GAGCGCGAAAGCAGCTGTCGAGGCGGCCGGGGGAAAAGTAGAGGTCATCT AA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11261:3..404+

>mRNA_P-wetherbeei_contig11261.1.1 ID=mRNA_P-wetherbeei_contig11261.1.1|Name=mRNA_P-wetherbeei_contig11261.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig11261:3..404+ (Phaeothamnion wetherbeei SAG_119_79)
CGCAAAGCCCGCAAGCGAGTCGCTCGTGGTGGTTCCCGCGGCGCCCAGTC
GGGCCGCGGTCATAAAGGTCAAGGTTCTCGCTCGGGCGGATCCAAAGGCC
CAGGCTTCGAGGGCGGCCAGACGCCCTGGTATCGCCGCCTGCCCCACTAC
CGTGGCTTCAAGAACCCTTTCCGCACGGACTATCAGGAAGTCAAGCTTTC
TCAACTCGAAGAGTTTGAGAATGGTGCGACCATCAATCCTGAAACGCTCA
TCGAGAAGAAAGTTCTTCGCAATCTCAATAAACCGATCAAGCTTCTGGGT
AACGGCAGTCTCACCAAGAAACTCACCGTTCACCTTCATGCAGCCACCTC
GAGCGCGAAAGCAGCTGTCGAGGCGGCCGGGGGAAAAGTAGAGGTCATCT
AA
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