mRNA_P-wetherbeei_contig11257.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11257.3.1
Unique NamemRNA_P-wetherbeei_contig11257.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11257.3.1 vs. uniprot
Match: A0A3C0TWM9_9PROT (HTH marR-type domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TWM9_9PROT)

HSP 1 Score: 185 bits (469), Expect = 5.620e-57
Identity = 95/155 (61.29%), Postives = 118/155 (76.13%), Query Frame = 1
Query:    1 MTNVTTKPPVDPLADAFDLQREVGWLVYDASRLLMRSIEREVRKAGITPQQWRVLVQLAREDGQTQSELAEETEIAPAPLGRLLDRLEDQKIIERRADLSDRRAKRIYLADGEQGAFFERLRQLAMHQFETVYKSVNEADLLELQRLLQKLKSNM 465
            MT  T   P  P   +F+++RE+ WL++D +R++ RSIER VR  G+   QWRVLVQ+AR++GQTQS LAEE EIAPAPLGRLLDRLE QK IERR D SDRR KR+Y    EQ  FF+RLRQLA+  FE VY+S+++ DL ELQRLLQK+K+NM
Sbjct:    1 MTESTLSFPPPPNDPSFEMRREIAWLIFDTARMMTRSIERHVRSTGVNSNQWRVLVQIARQNGQTQSHLAEEVEIAPAPLGRLLDRLEKQKFIERRPDPSDRRVKRVYFTGKEQAQFFDRLRQLALANFEKVYRSLDDKDLRELQRLLQKIKTNM 155          
BLAST of mRNA_P-wetherbeei_contig11257.3.1 vs. uniprot
Match: A0A351T5X4_9PROT (HTH marR-type domain-containing protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T5X4_9PROT)

HSP 1 Score: 169 bits (429), Expect = 5.020e-51
Identity = 89/148 (60.14%), Postives = 115/148 (77.70%), Query Frame = 1
Query:   43 DAFDLQREVGWLVYDASRLLMRSIEREVRKAGITPQQWRVLVQLAREDGQTQSELAEETEIAPAPLGRLLDRLEDQKIIERRADLSDRRAKRIYLADGEQGAFFERLRQLAMHQFETVYKSVNEADLLELQRLLQKLKSNML---QDG 477
            D F+LQR+VGWL++D SRLLMRS E++VR+ G+TP QWRVL+Q+ R +GQTQ+E+AEETEIA APLGRLLD+LE+Q +IERR D  DRRAKRIYL + E   F E  RQ A  QF+TVY  + +++LLEL R+L  +K+N+    QDG
Sbjct:    2 DRFELQRDVGWLIFDVSRLLMRSFEKKVREVGLTPHQWRVLLQIGRREGQTQTEIAEETEIARAPLGRLLDKLEEQGVIERRQDPHDRRAKRIYLVEREGKTFMEPFRQQAKEQFDTVYGKLADSELLELIRMLDHIKANIQSAEQDG 149          
BLAST of mRNA_P-wetherbeei_contig11257.3.1 vs. uniprot
Match: A0A518RBJ9_9SPHN (MarR family transcriptional regulator n=1 Tax=Sphingomonas suaedae TaxID=2599297 RepID=A0A518RBJ9_9SPHN)

HSP 1 Score: 97.8 bits (242), Expect = 6.200e-23
Identity = 56/138 (40.58%), Postives = 83/138 (60.14%), Query Frame = 1
Query:   55 LQREVGWLVYDASRLLMRSIEREVRKAGITPQQWRVLVQLAREDGQTQSELAEETEIAPAPLGRLLDRLEDQKIIERRADLSDRRAKRIYLADGEQGAFFERLRQLAMHQFETVYKSVNEADLLELQRLLQKLKSNML 468
            +   +G+LV D +RLL R  +   R+ G+T  QWR L  LAR +G  Q  LAE  E+ P  L R+LDRLED  ++ERR D +DRRA RI+L D  Q     +LR +A    E     ++EAD  +++R L ++++N++
Sbjct:    1 MNEPLGFLVADLARLLRRDFDLRAREIGVTNAQWRTLKTLARHEGSNQGALAELLEVEPITLARMLDRLEDAGLVERRRDPADRRAWRIHLTDAAQ-PLIGQLRDIADELVEDALAGISEADRAQMRRTLDRVRTNLI 137          
BLAST of mRNA_P-wetherbeei_contig11257.3.1 vs. uniprot
Match: A0A371BH81_9SPHN (MarR family transcriptional regulator n=1 Tax=Sphingorhabdus pulchriflava TaxID=2292257 RepID=A0A371BH81_9SPHN)

HSP 1 Score: 97.1 bits (240), Expect = 1.170e-22
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   55 LQREVGWLVYDASRLLMRSIEREVRKAGITPQQWRVLVQLAREDGQTQSELAEETEIAPAPLGRLLDRLEDQKIIERRADLSDRRAKRIYLADGEQGAFFERLRQLAMHQFETVYKSVNEADLLELQRLLQKLKSNMLQDGTE 483
            +  ++G+L+ D +RL+ R+ +  VR  GIT  QWRVL  L R  G TQ  LAE  ++ P  LGR++DR++D  ++ERRAD SDRRA RIYL    +    E L+ LA   F      +NEA   +L+ +L  ++ N+ +   E
Sbjct:    1 MSEDLGFLIGDTARLMRRAFDERVRTKGITRPQWRVLGLLNRFGGSTQVALAEMMDVEPITLGRMIDRMQDSGLVERRADPSDRRAWRIYLTPSGESRL-EDLKPLATELFADAVSGLNEAQQADLEAMLDTIRLNLTRKAPE 142          
BLAST of mRNA_P-wetherbeei_contig11257.3.1 vs. uniprot
Match: A0A7Y8M8X7_9PROT (MarR family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y8M8X7_9PROT)

HSP 1 Score: 95.9 bits (237), Expect = 1.240e-21
Identity = 60/150 (40.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   16 TKPPVDPLADAFDLQREVGWLVYDASRLLMRSIEREVRKAGITPQQWRVLVQLAREDGQTQSELAEETEIAPAPLGRLLDRLEDQKIIERRADLSDRRAKRIYLADGEQGAFFERLRQLAMHQFETVYKSVNEADLLELQRLLQKLKSNM 465
            T+ P    AD  +++ E+GWL++D  RLL R+ + + RK G+T  QWRV+V L REDG TQ  LAE  +I  AP+GRL+DRLE    IERR D  D RA+R+Y    +       L+  A   F+ ++  +++AD   L R L  ++  +
Sbjct:   20 TRRPAPAGADV-EVEFEIGWLMHDVHRLLSRAFDDKFRKLGLTRAQWRVMVHLLREDGLTQKALAEVDQIEKAPMGRLVDRLEQLGWIERRPDPLDGRARRVYRT-AKIDPLLPELKAGAATIFDHMFDGLDDADRGRLHRTLSAMRDRL 167          
BLAST of mRNA_P-wetherbeei_contig11257.3.1 vs. uniprot
Match: A0A5C9A347_9GAMM (MarR family transcriptional regulator n=2 Tax=Parahaliea TaxID=1857932 RepID=A0A5C9A347_9GAMM)

HSP 1 Score: 93.6 bits (231), Expect = 2.620e-21
Identity = 55/141 (39.01%), Postives = 90/141 (63.83%), Query Frame = 1
Query:   52 DLQREVGWLVYDASRLLMRSIEREVRKAGITPQQWRVLVQLAREDGQTQSELAEETEIAPAPLGRLLDRLEDQKIIERRADLSDRRAKRIYLADGEQGAFFERLRQLAMHQFETVYKSVNEADLLELQRLLQKLKSNMLQD 474
            D + ++ + ++ A+RLL R+ +R  R+ G+T  +W+VL  LAR++G  Q+ELAE  ++AP  L R LD LE + ++ERR D SDRR  RIYL +  Q A    LR+LA    E   + ++  ++ +LQ+LL +++ N+ +D
Sbjct:    5 DSEAQMSFELHSAARLLRRNFDRRAREHGLTRSRWQVLWHLARQEGLKQAELAENMDVAPISLTRQLDNLEQEGLVERRRDDSDRRCFRIYLTEAAQPALTV-LRELAQATREQALEGLSAREVDQLQKLLGRVRQNLSRD 144          
BLAST of mRNA_P-wetherbeei_contig11257.3.1 vs. uniprot
Match: UPI000EAA78B8 (MarR family transcriptional regulator n=1 Tax=Tsuneonella amylolytica TaxID=2338327 RepID=UPI000EAA78B8)

HSP 1 Score: 93.2 bits (230), Expect = 3.800e-21
Identity = 54/141 (38.30%), Postives = 86/141 (60.99%), Query Frame = 1
Query:   67 VGWLVYDASRLLMRSIEREVRKAGITPQQWRVLVQLAREDGQTQSELAEETEIAPAPLGRLLDRLEDQKIIERRADLSDRRAKRIYLADGEQGAFFERLRQLAMHQFETVYKSVNEADLLELQRLLQKLKSNMLQDGTEPL 489
            +G L+ D+SRLL R  +  VR  G+T  QW+VL  L R +G  Q  LAE+ ++ P  + R++DRL+D  ++ERRAD +DRR+ R++L    + A  ++LR +A   FE     + EAD   LQ +L++++ N+ +   E L
Sbjct:    4 IGSLLGDSSRLLRREFDARVRDIGVTWPQWQVLTTLRRHEGINQGGLAEQLDVEPITVCRMVDRLQDAALVERRADPADRRSWRLFLTPRAE-ALLDQLRPIAERLFEEALDGIAEADRAALQAMLERIRDNLSRRDAEGL 143          
BLAST of mRNA_P-wetherbeei_contig11257.3.1 vs. uniprot
Match: A0A2S7K171_9PROT (MarR family transcriptional regulator n=1 Tax=Marinicaulis flavus TaxID=2058213 RepID=A0A2S7K171_9PROT)

HSP 1 Score: 93.6 bits (231), Expect = 5.480e-21
Identity = 55/145 (37.93%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   55 LQREVGWLVYDASRLLMRSIEREVRKAGITPQQWRVLVQLAREDGQTQSELAEETEIAPAPLGRLLDRLEDQKIIERRADLSDRRAKRIYLADGEQGAFFERLRQLAMHQFETVYKSVNEADLLELQRLLQKLKSNMLQDGTEPL 489
            L+R  G+LV+D +RLL R  +R V+  G+T  QW VL  L R DG+TQ  LA+E ++ PAPLGRL+DRLE+   + R    +DRRA  ++L D +     E +R  A + ++  +K ++  ++ +    L   KSN+     EP+
Sbjct:    8 LERNPGYLVHDVARLLRREFDRRVKHLGLTRAQWFVLAHLYRNDGRTQRALADELDMEPAPLGRLIDRLEESGWVRRAPSAADRRANLVHLTD-KIIPLIEEMRAAANNLYKDAFKGMSNKNVEDFVEALTIAKSNLNDLSAEPV 151          
BLAST of mRNA_P-wetherbeei_contig11257.3.1 vs. uniprot
Match: A0A2G2GJN8_9PROT (MarR family transcriptional regulator n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GJN8_9PROT)

HSP 1 Score: 92.8 bits (229), Expect = 6.440e-21
Identity = 54/135 (40.00%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   61 REVGWLVYDASRLLMRSIEREVRKAGITPQQWRVLVQLAREDGQTQSELAEETEIAPAPLGRLLDRLEDQKIIERRADLSDRRAKRIYLADGEQGAFFERLRQLAMHQFETVYKSVNEADLLELQRLLQKLKSNM 465
            R  G+LV+D +RLL R+ ++ VR+ G+T  QW VL  L R DGQTQ ELA++ ++ PAP+GRL+DRLE+   + R AD  DRR KR++L+  +     E +R+ A   +   +  V+  D      +L+  K N+
Sbjct:   10 RNPGFLVHDLARLLRRTFDQRVRQIGLTRAQWFVLAHLYRTDGQTQRELADDLDMEPAPIGRLIDRLEESGWLRREADARDRRVKRVFLS-AKILPHMEEMRETAKGVYADAFFGVSSQDFETFVDVLEAAKFNL 143          
BLAST of mRNA_P-wetherbeei_contig11257.3.1 vs. uniprot
Match: A0A255Y8J0_9SPHN (Transcriptional regulator n=1 Tax=Sandarakinorhabdus cyanobacteriorum TaxID=1981098 RepID=A0A255Y8J0_9SPHN)

HSP 1 Score: 92.4 bits (228), Expect = 9.320e-21
Identity = 55/148 (37.16%), Postives = 90/148 (60.81%), Query Frame = 1
Query:   34 PLADAFDLQREVGWLVYDASRLLMRSIEREVRKAGITPQQWRVLVQLAREDGQTQSELAEETEIAPAPLGRLLDRLEDQKIIERRADLSDRRAKRIYLADGEQGAFFERLRQLAMHQFETVYKSVNEADLLELQRLLQKLKSNMLQDG 477
            P A  F +   +G LV DA+RLL R  +   R  G++  QW+VL+ LAR +G +Q+ LAE  E+    +GR++DRLE+  ++ERR D +DRRA +++L         + L+ +A      +   ++EA+  EL RLL +L++N+L++G
Sbjct:    9 PPAGRFAVADTIGVLVSDAARLLRRRFDARARAIGVSRAQWQVLIALARSEGSSQAALAERLEVETITVGRMVDRLEEAGLVERRPDPADRRAWQLFLTARANDLLLD-LQPVADAVRAEMLAGLSEAEQAELHRLLSRLRANLLREG 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11257.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TWM9_9PROT5.620e-5761.29HTH marR-type domain-containing protein n=1 Tax=Al... [more]
A0A351T5X4_9PROT5.020e-5160.14HTH marR-type domain-containing protein n=3 Tax=Al... [more]
A0A518RBJ9_9SPHN6.200e-2340.58MarR family transcriptional regulator n=1 Tax=Sphi... [more]
A0A371BH81_9SPHN1.170e-2239.86MarR family transcriptional regulator n=1 Tax=Sphi... [more]
A0A7Y8M8X7_9PROT1.240e-2140.00MarR family transcriptional regulator n=1 Tax=Alph... [more]
A0A5C9A347_9GAMM2.620e-2139.01MarR family transcriptional regulator n=2 Tax=Para... [more]
UPI000EAA78B83.800e-2138.30MarR family transcriptional regulator n=1 Tax=Tsun... [more]
A0A2S7K171_9PROT5.480e-2137.93MarR family transcriptional regulator n=1 Tax=Mari... [more]
A0A2G2GJN8_9PROT6.440e-2140.00MarR family transcriptional regulator n=1 Tax=Robi... [more]
A0A255Y8J0_9SPHN9.320e-2137.16Transcriptional regulator n=1 Tax=Sandarakinorhabd... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11257contigP-wetherbeei_contig11257:1409..1906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1333998.M2A_1691
Preferred namemarR1
PFAMsMarR,MarR_2
Model size498
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.23e-20
EggNOG OGsCOG1846@1|root,COG1846@2|Bacteria
DescriptionDNA-binding transcription factor activity
Cds size498
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185904.3530447-CDS-P-wetherbeei_contig11257:1408..19061683185904.3530447-CDS-P-wetherbeei_contig11257:1408..1906Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11257 1409..1906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11257.3.1prot_P-wetherbeei_contig11257.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11257 1409..1906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11257.3.1

>prot_P-wetherbeei_contig11257.3.1 ID=prot_P-wetherbeei_contig11257.3.1|Name=mRNA_P-wetherbeei_contig11257.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MTNVTTKPPVDPLADAFDLQREVGWLVYDASRLLMRSIEREVRKAGITPQ
QWRVLVQLAREDGQTQSELAEETEIAPAPLGRLLDRLEDQKIIERRADLS
DRRAKRIYLADGEQGAFFERLRQLAMHQFETVYKSVNEADLLELQRLLQK
LKSNMLQDGTEPLKS*
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mRNA from alignment at P-wetherbeei_contig11257:1409..1906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11257.3.1 ID=mRNA_P-wetherbeei_contig11257.3.1|Name=mRNA_P-wetherbeei_contig11257.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig11257:1409..1906+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAATGTCACAACCAAGCCACCTGTAGACCCTTTGGCCGACGCGTT TGATCTGCAACGCGAGGTCGGCTGGCTGGTCTATGACGCCTCACGTCTCC TGATGCGCTCGATTGAGCGTGAGGTGCGCAAGGCAGGCATTACACCGCAG CAATGGCGGGTGCTGGTGCAACTTGCCCGCGAGGATGGCCAGACCCAAAG CGAATTGGCGGAAGAAACCGAAATCGCCCCGGCCCCCCTGGGCCGCCTGC TGGACCGGCTGGAAGACCAAAAGATTATCGAGCGCCGTGCGGATCTATCC GACCGGCGCGCCAAGCGCATCTATCTGGCGGACGGCGAGCAGGGGGCATT TTTTGAGCGGCTCAGGCAATTGGCCATGCATCAGTTCGAGACTGTCTATA AGTCTGTGAACGAGGCCGATTTACTCGAATTGCAGCGCCTGCTACAAAAG CTCAAATCTAATATGCTGCAGGATGGAACAGAACCTCTTAAATCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11257:1409..1906+

>mRNA_P-wetherbeei_contig11257.3.1 ID=mRNA_P-wetherbeei_contig11257.3.1|Name=mRNA_P-wetherbeei_contig11257.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig11257:1409..1906+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAATGTCACAACCAAGCCACCTGTAGACCCTTTGGCCGACGCGTT
TGATCTGCAACGCGAGGTCGGCTGGCTGGTCTATGACGCCTCACGTCTCC
TGATGCGCTCGATTGAGCGTGAGGTGCGCAAGGCAGGCATTACACCGCAG
CAATGGCGGGTGCTGGTGCAACTTGCCCGCGAGGATGGCCAGACCCAAAG
CGAATTGGCGGAAGAAACCGAAATCGCCCCGGCCCCCCTGGGCCGCCTGC
TGGACCGGCTGGAAGACCAAAAGATTATCGAGCGCCGTGCGGATCTATCC
GACCGGCGCGCCAAGCGCATCTATCTGGCGGACGGCGAGCAGGGGGCATT
TTTTGAGCGGCTCAGGCAATTGGCCATGCATCAGTTCGAGACTGTCTATA
AGTCTGTGAACGAGGCCGATTTACTCGAATTGCAGCGCCTGCTACAAAAG
CTCAAATCTAATATGCTGCAGGATGGAACAGAACCTCTTAAATCCTGA
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