mRNA_P-wetherbeei_contig11002.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11002.1.1
Unique NamemRNA_P-wetherbeei_contig11002.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11002.1.1 vs. uniprot
Match: A0A6H5JCV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.140e-10
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 PRCTAAYISHTDWVTDMVVASGRLLVSCSNDCTLKLWDLAAA 129
            P CT  + SHTDWVT + VA GR++ S S D TLKLWDLAAA
Sbjct:  100 PPCTGVFASHTDWVTGLAVAEGRIMASASYDGTLKLWDLAAA 141
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BLAST of mRNA_P-wetherbeei_contig11002.1.1 vs. uniprot
Match: A0A6I9UVR7_SESIN (WD repeat-containing protein 48 isoform X1 n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9UVR7_SESIN)

HSP 1 Score: 52.4 bits (124), Expect = 1.370e-6
Identity = 17/36 (47.22%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   10 CTAAYISHTDWVTDMVVASGRLLVSCSNDCTLKLWD 117
            C+  + SH DWV D+++  G++LVSCS+D T+K+W+
Sbjct:   76 CSTTFESHVDWVNDVILTGGKVLVSCSSDATVKVWN 111
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BLAST of mRNA_P-wetherbeei_contig11002.1.1 vs. uniprot
Match: A0A2H2IT98_CAEJA (Uncharacterized protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2IT98_CAEJA)

HSP 1 Score: 48.5 bits (114), Expect = 3.140e-5
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   31 HTDWVTDMVV-ASGRLLVSCSNDCTLKLWDL 120
            HTDWVTDM++ A GR+L+S SND T+K+W++
Sbjct:   87 HTDWVTDMIICAEGRVLMSSSNDTTVKVWNI 117
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BLAST of mRNA_P-wetherbeei_contig11002.1.1 vs. uniprot
Match: WDR48_CAEBR (WD repeat-containing protein 48 homolog n=4 Tax=Caenorhabditis TaxID=6237 RepID=WDR48_CAEBR)

HSP 1 Score: 47.8 bits (112), Expect = 5.880e-5
Identity = 20/31 (64.52%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   31 HTDWVTDMVVA-SGRLLVSCSNDCTLKLWDL 120
            HTDWVTDMV+  +G+LLVS SND T+K+W +
Sbjct:   89 HTDWVTDMVLCGNGKLLVSSSNDTTVKVWSI 119
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BLAST of mRNA_P-wetherbeei_contig11002.1.1 vs. uniprot
Match: A0A151ZCA8_9MYCE (WD40 repeat-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZCA8_9MYCE)

HSP 1 Score: 47.8 bits (112), Expect = 5.890e-5
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   19 AYISHTDWVTDMVVAS-GRLLVSCSNDCTLKLWDLAA 126
            +Y  HTDWV D+ + S   LLVSCS+D T+K+WDL A
Sbjct:  154 SYEDHTDWVNDIFLDSRDNLLVSCSSDSTIKIWDLDA 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11002.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JCV2_9PHAE1.140e-1064.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6I9UVR7_SESIN1.370e-647.22WD repeat-containing protein 48 isoform X1 n=2 Tax... [more]
A0A2H2IT98_CAEJA3.140e-561.29Uncharacterized protein n=1 Tax=Caenorhabditis jap... [more]
WDR48_CAEBR5.880e-564.52WD repeat-containing protein 48 homolog n=4 Tax=Ca... [more]
A0A151ZCA8_9MYCE5.890e-556.76WD40 repeat-containing protein n=1 Tax=Tieghemoste... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11002contigP-wetherbeei_contig11002:15..155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog3847.GLYMA10G30051.2
PFAMsDUF3337,WD40
Model size141
Max annot lvl35493|Streptophyta
KEGG koko:K15361
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016579,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0070646,GO:0070647,GO:0071704,GO:1901564
Exons1
Evalue8.74e-08
EggNOG OGsKOG0308@1|root,KOG0308@2759|Eukaryota,37MN5@33090|Viridiplantae,3G809@35493|Streptophyta,4JJZY@91835|fabids
DescriptionWD repeat-containing protein
Cds size141
COG categoryS
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185893.9863293-CDS-P-wetherbeei_contig11002:14..1551683185893.9863293-CDS-P-wetherbeei_contig11002:14..155Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11002 15..155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11002.1.1prot_P-wetherbeei_contig11002.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11002 15..155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11002.1.1

>prot_P-wetherbeei_contig11002.1.1 ID=prot_P-wetherbeei_contig11002.1.1|Name=mRNA_P-wetherbeei_contig11002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
VPRCTAAYISHTDWVTDMVVASGRLLVSCSNDCTLKLWDLAAAPLL*
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mRNA from alignment at P-wetherbeei_contig11002:15..155-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11002.1.1 ID=mRNA_P-wetherbeei_contig11002.1.1|Name=mRNA_P-wetherbeei_contig11002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig11002:15..155- (Phaeothamnion wetherbeei SAG_119_79)
GTGCCCCGGTGCACCGCCGCCTATATTTCGCACACGGACTGGGTGACGGA
CATGGTCGTCGCCAGTGGCCGCCTGCTAGTGTCGTGCTCCAACGACTGCA
CGCTGAAGCTGTGGGACCTGGCCGCGGCGCCTTTGCTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11002:15..155-

>mRNA_P-wetherbeei_contig11002.1.1 ID=mRNA_P-wetherbeei_contig11002.1.1|Name=mRNA_P-wetherbeei_contig11002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig11002:15..155- (Phaeothamnion wetherbeei SAG_119_79)
GTGCCCCGGTGCACCGCCGCCTATATTTCGCACACGGACTGGGTGACGGA
CATGGTCGTCGCCAGTGGCCGCCTGCTAGTGTCGTGCTCCAACGACTGCA
CGCTGAAGCTGTGGGACCTGGCCGCGGCGCCTTTGCTGTAG
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