prot_P-wetherbeei_contig11002.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig11002.1.1
Unique Nameprot_P-wetherbeei_contig11002.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length47
Homology
BLAST of mRNA_P-wetherbeei_contig11002.1.1 vs. uniprot
Match: A0A6H5JCV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.140e-10
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0
Query:    2 PRCTAAYISHTDWVTDMVVASGRLLVSCSNDCTLKLWDLAAA 43
            P CT  + SHTDWVT + VA GR++ S S D TLKLWDLAAA
Sbjct:  100 PPCTGVFASHTDWVTGLAVAEGRIMASASYDGTLKLWDLAAA 141          
BLAST of mRNA_P-wetherbeei_contig11002.1.1 vs. uniprot
Match: A0A6I9UVR7_SESIN (WD repeat-containing protein 48 isoform X1 n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9UVR7_SESIN)

HSP 1 Score: 52.4 bits (124), Expect = 1.370e-6
Identity = 17/36 (47.22%), Postives = 28/36 (77.78%), Query Frame = 0
Query:    4 CTAAYISHTDWVTDMVVASGRLLVSCSNDCTLKLWD 39
            C+  + SH DWV D+++  G++LVSCS+D T+K+W+
Sbjct:   76 CSTTFESHVDWVNDVILTGGKVLVSCSSDATVKVWN 111          
BLAST of mRNA_P-wetherbeei_contig11002.1.1 vs. uniprot
Match: WDR48_CAEBR (WD repeat-containing protein 48 homolog n=4 Tax=Caenorhabditis TaxID=6237 RepID=WDR48_CAEBR)

HSP 1 Score: 47.8 bits (112), Expect = 5.880e-5
Identity = 20/31 (64.52%), Postives = 26/31 (83.87%), Query Frame = 0
Query:   11 HTDWVTDMVVA-SGRLLVSCSNDCTLKLWDL 40
            HTDWVTDMV+  +G+LLVS SND T+K+W +
Sbjct:   89 HTDWVTDMVLCGNGKLLVSSSNDTTVKVWSI 119          
BLAST of mRNA_P-wetherbeei_contig11002.1.1 vs. uniprot
Match: A0A151ZCA8_9MYCE (WD40 repeat-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZCA8_9MYCE)

HSP 1 Score: 47.8 bits (112), Expect = 5.890e-5
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 0
Query:    7 AYISHTDWVTDMVVAS-GRLLVSCSNDCTLKLWDLAA 42
            +Y  HTDWV D+ + S   LLVSCS+D T+K+WDL A
Sbjct:  154 SYEDHTDWVNDIFLDSRDNLLVSCSSDSTIKIWDLDA 190          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11002.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JCV2_9PHAE1.140e-1064.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6I9UVR7_SESIN1.370e-647.22WD repeat-containing protein 48 isoform X1 n=2 Tax... [more]
WDR48_CAEBR5.880e-564.52WD repeat-containing protein 48 homolog n=4 Tax=Ca... [more]
A0A151ZCA8_9MYCE5.890e-556.76WD40 repeat-containing protein n=1 Tax=Tieghemoste... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 1..39
e-value: 3.0E-6
score: 36.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 8..46
score: 10.107432
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 3..46
e-value: 5.5E-10
score: 40.9
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 26..40
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 8..46
score: 9.836508
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 4..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11002contigP-wetherbeei_contig11002:15..155 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11002.1.1mRNA_P-wetherbeei_contig11002.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig11002 15..155 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig11002.1.1 ID=prot_P-wetherbeei_contig11002.1.1|Name=mRNA_P-wetherbeei_contig11002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
VPRCTAAYISHTDWVTDMVVASGRLLVSCSNDCTLKLWDLAAAPLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR036322WD40_repeat_dom_sf