mRNA_P-wetherbeei_contig10988.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10988.1.1
Unique NamemRNA_P-wetherbeei_contig10988.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10988.1.1 vs. uniprot
Match: A0A7J7PB09_9MAGN (Enhancer of rudimentary homolog n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7PB09_9MAGN)

HSP 1 Score: 102 bits (254), Expect = 3.020e-26
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 AGQHTLVLLQ-EQEGAQGIYLEFESTSLAMDGIVNFYEQKLRRIHPGKRNIQYDISDLFAFLDALGDLAALTLDPRTKQYGPHDRQWCKDHIFRHLRRQA 297
            A +HT+VL+Q  Q  A   ++++ES S AMDGI   YE+K++ ++P +RNI YDI+DL++F+D L DL+AL  D   + Y P+DRQW K   F HL++ A
Sbjct:    2 ANRHTIVLMQTSQNRASRTFMDYESVSQAMDGICGLYERKIKELNPSRRNITYDIADLYSFIDGLADLSALVYDHSVQAYLPYDRQWIKHRTFNHLKKLA 101          
BLAST of mRNA_P-wetherbeei_contig10988.1.1 vs. uniprot
Match: A0A0D6R333_ARACU (Uncharacterized protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R333_ARACU)

HSP 1 Score: 102 bits (253), Expect = 7.560e-26
Identity = 47/100 (47.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 AGQHTLVLLQEQEG-AQGIYLEFESTSLAMDGIVNFYEQKLRRIHPGKRNIQYDISDLFAFLDALGDLAALTLDPRTKQYGPHDRQWCKDHIFRHLRRQA 297
            A +HT+VL+Q     +   +++F+S + AMDGI   YE+KL+ ++P  RNIQYDI DL+ F+D L D++AL  DP  + Y P+DR+W K+ IF+HLR+ A
Sbjct:    2 ANRHTIVLIQTAPNRSTRTFMDFDSITQAMDGICGLYERKLKELNPAIRNIQYDIEDLYNFIDGLADMSALVCDPSIQAYLPYDRKWIKERIFQHLRKLA 101          
BLAST of mRNA_P-wetherbeei_contig10988.1.1 vs. uniprot
Match: A0A1Q3CIY5_CEPFO (Enhancer of rudimentary homolog n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3CIY5_CEPFO)

HSP 1 Score: 100 bits (248), Expect = 2.200e-25
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 AGQHTLVLLQ-EQEGAQGIYLEFESTSLAMDGIVNFYEQKLRRIHPGKRNIQYDISDLFAFLDALGDLAALTLDPRTKQYGPHDRQWCKDHIFRHLRRQA 297
            A +HT++L+Q  Q  A   +++++S S AMDGI   YE+KL+ ++P  RN+ YDISDL+ F+D L DL++L  D   + Y P+DRQW K  +F+HL++ A
Sbjct:    2 ANKHTIILMQTSQNRATRTFMDYDSISQAMDGICGIYERKLKDLNPAARNLTYDISDLYNFIDGLADLSSLVYDQSVQAYLPYDRQWIKQRLFQHLKKMA 101          
BLAST of mRNA_P-wetherbeei_contig10988.1.1 vs. uniprot
Match: A0A7S0V3F6_9CRYP (Enhancer of rudimentary homolog n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V3F6_9CRYP)

HSP 1 Score: 100 bits (248), Expect = 2.470e-25
Identity = 48/100 (48.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 AGQHTLVLLQEQEG-AQGIYLEFESTSLAMDGIVNFYEQKLRRIHPGKRNIQYDISDLFAFLDALGDLAALTLDPRTKQYGPHDRQWCKDHIFRHLRRQA 297
            AG HT+VLLQE    A   + +FES   AM+GI   YEQ+L+ ++PG+RNI YDI++L+AF+D LGDL  L  + +   Y PH++QW KD +++HL++ A
Sbjct:    7 AGSHTIVLLQETSSQASRTFSDFESIQDAMNGICQLYEQRLKSLNPGQRNITYDITELYAFIDQLGDLCCLVYNNQGA-YQPHNKQWVKDRVYQHLKKMA 105          
BLAST of mRNA_P-wetherbeei_contig10988.1.1 vs. uniprot
Match: K3YB26_SETIT (Enhancer of rudimentary homolog n=10 Tax=Panicoideae TaxID=147369 RepID=K3YB26_SETIT)

HSP 1 Score: 99.8 bits (247), Expect = 3.220e-25
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 AGQHTLVLLQ-EQEGAQGIYLEFESTSLAMDGIVNFYEQKLRRIHPGKRNIQYDISDLFAFLDALGDLAALTLDPRTKQYGPHDRQWCKDHIFRHLRRQA 297
            AG+HT++L+Q  Q  A   +L+F+S + A+DGI   YE+K+R I+P  RN+ YDISDL+ F+D L D++AL  D     + P+DRQW K  +F+HL+R A
Sbjct:    2 AGRHTIILMQPSQNRATRTFLDFDSVNHALDGICGLYERKIRNINPMVRNLTYDISDLYNFIDGLTDISALVFDDSLHAFLPYDRQWIKQKLFQHLKRLA 101          
BLAST of mRNA_P-wetherbeei_contig10988.1.1 vs. uniprot
Match: A0A067C2K0_SAPPC (Enhancer of rudimentary homolog n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C2K0_SAPPC)

HSP 1 Score: 99.0 bits (245), Expect = 6.850e-25
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   10 HTLVLLQEQEGAQG-IYLEFESTSLAMDGIVNFYEQKLRRIHPGKRNIQYDISDLFAFLDALGDLAALTLDPRTKQYGPHDRQWCKDHIFRHLRRQA 297
            HT++L+Q  E      YL+FES + AMDG+V  YE KL++++P KRNI YDI DL+ ++D+L DL+ L LD  TK Y P  ++W K  IF+ LR QA
Sbjct:    8 HTIILVQYTEDPNSRTYLDFESVNGAMDGVVKMYEAKLKQLNPSKRNITYDIQDLYNYIDSLADLSTLVLDLETKTYLPSGKEWIKKKIFQVLRNQA 104          
BLAST of mRNA_P-wetherbeei_contig10988.1.1 vs. uniprot
Match: A0A7S0M9W6_9CRYP (Enhancer of rudimentary homolog n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M9W6_9CRYP)

HSP 1 Score: 99.0 bits (245), Expect = 7.050e-25
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 AGQHTLVLLQEQEG-AQGIYLEFESTSLAMDGIVNFYEQKLRRIHPGKRNIQYDISDLFAFLDALGDLAALTLDPRTKQYGPHDRQWCKDHIFRHLRRQA 297
            AG+HT+VLLQE        + +FE+ + AM+GI   YEQ+L++++PG RNI YDI++L+ F+D LGDL  L  +  T  Y PH++QW KD ++ HL+R A
Sbjct:    7 AGKHTIVLLQESASKGSRTFSDFETVADAMNGICQLYEQRLKQLNPGVRNITYDITELYGFIDGLGDLCCLVYNG-TGAYEPHNKQWVKDRVYAHLKRMA 105          
BLAST of mRNA_P-wetherbeei_contig10988.1.1 vs. uniprot
Match: A0A6P8BXM6_PUNGR (Enhancer of rudimentary homolog n=3 Tax=Punica granatum TaxID=22663 RepID=A0A6P8BXM6_PUNGR)

HSP 1 Score: 98.6 bits (244), Expect = 8.930e-25
Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   10 HTLVLLQEQEG-AQGIYLEFESTSLAMDGIVNFYEQKLRRIHPGKRNIQYDISDLFAFLDALGDLAALTLDPRTKQYGPHDRQWCKDHIFRHLRRQAG 300
            HT+VL+Q     A   ++++ES S A+DGI   YE+KL+ ++P  RNI YDISDL+ F+D L DL+AL   P  + Y P+DR+W K   ++HL++ AG
Sbjct:    5 HTIVLMQPSPNRASRTFMDYESVSQAIDGICGLYERKLKELNPAIRNITYDISDLYNFIDGLADLSALVYSPSVQAYLPYDREWIKGRTYQHLKKMAG 102          
BLAST of mRNA_P-wetherbeei_contig10988.1.1 vs. uniprot
Match: L1IB99_GUITC (Enhancer of rudimentary homolog n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IB99_GUITC)

HSP 1 Score: 98.2 bits (243), Expect = 1.270e-24
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   10 HTLVLLQEQEG-AQGIYLEFESTSLAMDGIVNFYEQKLRRIHPGKRNIQYDISDLFAFLDALGDLAALTLDPRTKQYGPHDRQWCKDHIFRHLRRQA 297
            HT+VLLQE    +   + +FES S AM+GI   YEQ+L++++PG RNI YDIS+L+AF+D LGDL  L  +     Y PH++QW KD +F HL+R A
Sbjct:    6 HTIVLLQETASKSTRTFSDFESVSEAMNGICQLYEQRLKQMNPGMRNITYDISELYAFIDQLGDLCCLVYNGYGA-YEPHNKQWVKDRVFAHLKRMA 101          
BLAST of mRNA_P-wetherbeei_contig10988.1.1 vs. uniprot
Match: A0A7I8LJK6_SPIIN (Enhancer of rudimentary homolog n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LJK6_SPIIN)

HSP 1 Score: 96.7 bits (239), Expect = 5.280e-24
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    1 AGQHTLVLLQEQEG-AQGIYLEFESTSLAMDGIVNFYEQKLRRIHPGKRNIQYDISDLFAFLDALGDLAALTLDPRTKQYGPHDRQWCKDHIFRHLRRQA 297
            A +HT++L+Q     A   +++++S S AMDGI   YE+KL+ ++P  RNIQYDI+DL+ F+D L DL+AL  D   + Y P+DR+W K   F HL++ A
Sbjct:    2 ANRHTIILMQSSPNRATRTFMDYDSISQAMDGICGLYERKLKELNPTVRNIQYDIADLYNFIDGLTDLSALVFDHSMQAYLPYDREWIKQRTFHHLKKLA 101          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10988.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J7PB09_9MAGN3.020e-2647.00Enhancer of rudimentary homolog n=1 Tax=Kingdonia ... [more]
A0A0D6R333_ARACU7.560e-2647.00Uncharacterized protein n=2 Tax=Araucariaceae TaxI... [more]
A0A1Q3CIY5_CEPFO2.200e-2545.00Enhancer of rudimentary homolog n=1 Tax=Cephalotus... [more]
A0A7S0V3F6_9CRYP2.470e-2548.00Enhancer of rudimentary homolog n=1 Tax=Hemiselmis... [more]
K3YB26_SETIT3.220e-2547.00Enhancer of rudimentary homolog n=10 Tax=Panicoide... [more]
A0A067C2K0_SAPPC6.850e-2549.48Enhancer of rudimentary homolog n=11 Tax=Saprolegn... [more]
A0A7S0M9W6_9CRYP7.050e-2547.00Enhancer of rudimentary homolog n=1 Tax=Cryptomona... [more]
A0A6P8BXM6_PUNGR8.930e-2545.92Enhancer of rudimentary homolog n=3 Tax=Punica gra... [more]
L1IB99_GUITC1.270e-2450.52Enhancer of rudimentary homolog n=1 Tax=Guillardia... [more]
A0A7I8LJK6_SPIIN5.280e-2445.00Enhancer of rudimentary homolog n=1 Tax=Spirodela ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10988contigP-wetherbeei_contig10988:184..652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog13333.ERN07062
PFAMsER
Model size303
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.56e-26
EggNOG OGsKOG1766@1|root,KOG1766@2759|Eukaryota,37VB5@33090|Viridiplantae,3GJER@35493|Streptophyta
DescriptionEnhancer of rudimentary homolog
Cds size303
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185892.9954815-CDS-P-wetherbeei_contig10988:183..2741683185892.9954815-CDS-P-wetherbeei_contig10988:183..274Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10988 184..274 +
1683185893.003976-CDS-P-wetherbeei_contig10988:440..6521683185893.003976-CDS-P-wetherbeei_contig10988:440..652Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10988 441..652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10988.1.1prot_P-wetherbeei_contig10988.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10988 184..652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10988.1.1

>prot_P-wetherbeei_contig10988.1.1 ID=prot_P-wetherbeei_contig10988.1.1|Name=mRNA_P-wetherbeei_contig10988.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
AGQHTLVLLQEQEGAQGIYLEFESTSLAMDGIVNFYEQKLRRIHPGKRNI
QYDISDLFAFLDALGDLAALTLDPRTKQYGPHDRQWCKDHIFRHLRRQAG
*
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mRNA from alignment at P-wetherbeei_contig10988:184..652+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10988.1.1 ID=mRNA_P-wetherbeei_contig10988.1.1|Name=mRNA_P-wetherbeei_contig10988.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=469bp|location=Sequence derived from alignment at P-wetherbeei_contig10988:184..652+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGGCCAACACACGCTCGTGCTGCTGCAGGAGCAAGAGGGCGCGCAGGG CATCTATTTAGAGTTTGAGAGCACGTCGCTTGCCATGGACGGTGAGATCT GTGAAAGCTTTAAAAAAGCCACGTTAAATAACAGCGAGCGCTCGGCCCGT TGCCACCTTCCTTCTCCTGTAGCCACTTCTTTTGCAGTATCGAAAACTGT GACAGAGTAAGTGGCACTTAGCATCCCTTCTGCCGCACTTGCCCGTCTTT TCTCCAGGAATCGTCAACTTTTACGAACAAAAGCTCCGACGGATCCACCC GGGAAAGCGGAATATCCAGTATGACATCAGCGACCTTTTTGCTTTCCTTG ACGCCCTCGGGGACCTGGCGGCGCTCACATTGGACCCACGGACAAAGCAG TATGGCCCGCACGACCGACAGTGGTGCAAGGATCATATCTTTAGGCATTT GCGGCGCCAAGCTGGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10988:184..652+

>mRNA_P-wetherbeei_contig10988.1.1 ID=mRNA_P-wetherbeei_contig10988.1.1|Name=mRNA_P-wetherbeei_contig10988.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig10988:184..652+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGGCCAACACACGCTCGTGCTGCTGCAGGAGCAAGAGGGCGCGCAGGG
CATCTATTTAGAGTTTGAGAGCACGTCGCTTGCCATGGACGGAATCGTCA
ACTTTTACGAACAAAAGCTCCGACGGATCCACCCGGGAAAGCGGAATATC
CAGTATGACATCAGCGACCTTTTTGCTTTCCTTGACGCCCTCGGGGACCT
GGCGGCGCTCACATTGGACCCACGGACAAAGCAGTATGGCCCGCACGACC
GACAGTGGTGCAAGGATCATATCTTTAGGCATTTGCGGCGCCAAGCTGGT
TGA
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