mRNA_P-wetherbeei_contig10949.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10949.1.1
Unique NamemRNA_P-wetherbeei_contig10949.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10949.1.1 vs. uniprot
Match: UPI0016645BEC (SDR family oxidoreductase n=1 Tax=Hymenobacter cavernae TaxID=2044852 RepID=UPI0016645BEC)

HSP 1 Score: 58.2 bits (139), Expect = 1.040e-8
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    4 PYALVTGATSGIGRAVAAELAARGYNLVLVGRSEDSLAAAAVELRAAGR 150
            PYALVTGA+ GIGRA+A +LA RGYNL+LV RS D LA  A EL  A R
Sbjct:    2 PYALVTGASRGIGRAIATDLARRGYNLLLVARSADVLAQLATELGQAHR 50          
BLAST of mRNA_P-wetherbeei_contig10949.1.1 vs. uniprot
Match: A0A7C9TQU5_9MICO (SDR family oxidoreductase n=1 Tax=Galbitalea soli TaxID=1268042 RepID=A0A7C9TQU5_9MICO)

HSP 1 Score: 57.8 bits (138), Expect = 1.420e-8
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1
Query:   10 ALVTGATSGIGRAVAAELAARGYNLVLVGRSEDSLAAAAVELRAAGR 150
            ALVTG TSGIG A A +LAARGY+LVLV RSE+ LA  A ELRA GR
Sbjct:    4 ALVTGGTSGIGAAFARKLAARGYDLVLVARSEERLAEMATELRALGR 50          
BLAST of mRNA_P-wetherbeei_contig10949.1.1 vs. uniprot
Match: R7SK39_DICSQ (NAD(P)-binding protein n=6 Tax=Dichomitus squalens TaxID=114155 RepID=R7SK39_DICSQ)

HSP 1 Score: 57.4 bits (137), Expect = 2.500e-8
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    1 APYALVTGATSGIGRAVAAELAARGYNLVLVGRSEDSLAAAAVELRAAGR 150
            APYA+VTGAT GIG+A AAEL ARG+N+VL GR+E  +     ELRA G+
Sbjct:   50 APYAIVTGATDGIGKATAAELLARGFNVVLHGRNEAKMQQVVRELRAQGK 99          
BLAST of mRNA_P-wetherbeei_contig10949.1.1 vs. uniprot
Match: A0A835ZD17_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD17_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.590e-8
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 APYALVTGATSGIGRAVAAELAARGYNLVLVGRSEDSLA----AAAVELRAAGR 150
            APYA+VTGA+SGIGRA+AA+LA +G+N+VL+GR+ D+L     A   E RAAGR
Sbjct:   92 APYAVVTGASSGIGRAIAADLARQGWNVVLIGRNRDALREHARALKREARAAGR 145          
BLAST of mRNA_P-wetherbeei_contig10949.1.1 vs. uniprot
Match: A0A165R6Q2_9APHY (NAD(P)-binding protein n=1 Tax=Daedalea quercina L-15889 TaxID=1314783 RepID=A0A165R6Q2_9APHY)

HSP 1 Score: 56.6 bits (135), Expect = 4.680e-8
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    1 APYALVTGATSGIGRAVAAELAARGYNLVLVGRSEDSLAAAAVELRAAGR 150
            APYALVTGAT GIG+AVA EL A+G+NL++ GR+E  +     EL+A GR
Sbjct:   56 APYALVTGATDGIGKAVAQELFAKGFNLIIHGRNEAKIQKVVEELKAQGR 105          
BLAST of mRNA_P-wetherbeei_contig10949.1.1 vs. uniprot
Match: S8DLA8_FOMPI (NAD-binding protein n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8DLA8_FOMPI)

HSP 1 Score: 55.8 bits (133), Expect = 8.900e-8
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 APYALVTGATSGIGRAVAAELAARGYNLVLVGRSEDSLAAAAVELRAAG 147
            APYA+VTGAT GIG+AVA EL  RG+NL++ GR+E+ +     E++A+G
Sbjct:   65 APYAIVTGATDGIGKAVARELFGRGFNLIIHGRNEEKIRTVIAEIKASG 113          
BLAST of mRNA_P-wetherbeei_contig10949.1.1 vs. uniprot
Match: A0A2M9B568_9BACT (Uncharacterized protein n=2 Tax=Hymenobacter TaxID=89966 RepID=A0A2M9B568_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.000e-7
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1
Query:    4 PYALVTGATSGIGRAVAAELAARGYNLVLVGRSEDSLAAAAVEL 135
            PYAL+TGA+ GIGRA+A ELA RGY+L+L  RS+D LA  A EL
Sbjct:    2 PYALITGASRGIGRALAHELAQRGYSLLLTARSQDQLAQVATEL 45          
BLAST of mRNA_P-wetherbeei_contig10949.1.1 vs. uniprot
Match: A0A5B8A0Z0_9BACT (SDR family oxidoreductase n=2 Tax=Hymenobacter TaxID=89966 RepID=A0A5B8A0Z0_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.000e-7
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1
Query:    7 YALVTGATSGIGRAVAAELAARGYNLVLVGRSEDSLAAAAVELR 138
            YALVTGA+ GIG+A+A ELA RGYNL+L  RSED+L   A +LR
Sbjct:    3 YALVTGASRGIGQAIATELARRGYNLLLTARSEDALEKVAAQLR 46          
BLAST of mRNA_P-wetherbeei_contig10949.1.1 vs. uniprot
Match: UPI001FF2D13F (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Blastococcus sp. PRF04-17 TaxID=2933797 RepID=UPI001FF2D13F)

HSP 1 Score: 55.5 bits (132), Expect = 1.150e-7
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    4 PYALVTGATSGIGRAVAAELAARGYNLVLVGRSEDSLAAAAVELRAAG 147
            P  L+TGA+SGIGRA A ELA RG  LVLV R E+SL  AA E RAAG
Sbjct:    8 PTVLITGASSGIGRATAKELAGRGATLVLVSRGEESLEEAAAEARAAG 55          
BLAST of mRNA_P-wetherbeei_contig10949.1.1 vs. uniprot
Match: A0A2K2D3W1_BRADI (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2D3W1_BRADI)

HSP 1 Score: 55.1 bits (131), Expect = 1.520e-7
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    4 PYALVTGATSGIGRAVAAELAARGYNLVLVGRSEDSLAAAAVELRA 141
            P+A+VTGAT GIGRA+A  LAA G +LVLVGR+ D LAA + E+RA
Sbjct:  123 PWAVVTGATDGIGRAIAFRLAASGLSLVLVGRNPDKLAAVSEEIRA 168          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10949.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0016645BEC1.040e-867.35SDR family oxidoreductase n=1 Tax=Hymenobacter cav... [more]
A0A7C9TQU5_9MICO1.420e-872.34SDR family oxidoreductase n=1 Tax=Galbitalea soli ... [more]
R7SK39_DICSQ2.500e-862.00NAD(P)-binding protein n=6 Tax=Dichomitus squalens... [more]
A0A835ZD17_9STRA2.590e-861.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A165R6Q2_9APHY4.680e-860.00NAD(P)-binding protein n=1 Tax=Daedalea quercina L... [more]
S8DLA8_FOMPI8.900e-855.10NAD-binding protein n=1 Tax=Fomitopsis pinicola (s... [more]
A0A2M9B568_9BACT1.000e-765.91Uncharacterized protein n=2 Tax=Hymenobacter TaxID... [more]
A0A5B8A0Z0_9BACT1.000e-765.91SDR family oxidoreductase n=2 Tax=Hymenobacter Tax... [more]
UPI001FF2D13F1.150e-766.67SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A2K2D3W1_BRADI1.520e-765.22Uncharacterized protein n=1 Tax=Brachypodium dista... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10949contigP-wetherbeei_contig10949:17..166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog40483.S8DLA8
PFAMsadh_short
Model size150
Max annot lvl4751|Fungi
KEGG rclassRC00029,RC00103,RC00127,RC00261
KEGG koko:K10251
KEGG ReactionR02352,R02353,R04681,R04682,R07759,R08945,R08980,R10826
KEGG Pathwayko00062,ko00140,ko01040,ko01100,ko01110,ko01212,map00062,map00140,map01040,map01100,map01110,map01212
KEGG ModuleM00415
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.46e-08
EggNOG OGsCOG0300@1|root,KOG1014@2759|Eukaryota,3A45S@33154|Opisthokonta,3P4FA@4751|Fungi,3V5QR@5204|Basidiomycota,22C2I@155619|Agaricomycetes,3H76D@355688|Agaricomycetes incertae sedis
Ec32 ortholog descriptionShort-chain dehydrogenase/reductase SDR
Ec32 orthologEc-16_000520.1
EC1.1.1.330,1.1.1.62
DescriptionEnoyl-(Acyl carrier protein) reductase
Cds size150
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185891.2411315-CDS-P-wetherbeei_contig10949:16..1661683185891.2411315-CDS-P-wetherbeei_contig10949:16..166Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10949 17..166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10949.1.1prot_P-wetherbeei_contig10949.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10949 17..166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10949.1.1

>prot_P-wetherbeei_contig10949.1.1 ID=prot_P-wetherbeei_contig10949.1.1|Name=mRNA_P-wetherbeei_contig10949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=50bp
APYALVTGATSGIGRAVAAELAARGYNLVLVGRSEDSLAAAAVELRAAGR
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mRNA from alignment at P-wetherbeei_contig10949:17..166-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10949.1.1 ID=mRNA_P-wetherbeei_contig10949.1.1|Name=mRNA_P-wetherbeei_contig10949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig10949:17..166- (Phaeothamnion wetherbeei SAG_119_79)
GCCCCCTATGCTCTCGTGACGGGCGCCACGAGCGGTATCGGGCGGGCGGT GGCGGCGGAGCTGGCGGCCCGTGGCTACAACCTCGTGCTGGTGGGCCGGT CGGAGGACAGTCTCGCCGCCGCGGCGGTGGAGCTCCGGGCAGCGGGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10949:17..166-

>mRNA_P-wetherbeei_contig10949.1.1 ID=mRNA_P-wetherbeei_contig10949.1.1|Name=mRNA_P-wetherbeei_contig10949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig10949:17..166- (Phaeothamnion wetherbeei SAG_119_79)
GCCCCCTATGCTCTCGTGACGGGCGCCACGAGCGGTATCGGGCGGGCGGT
GGCGGCGGAGCTGGCGGCCCGTGGCTACAACCTCGTGCTGGTGGGCCGGT
CGGAGGACAGTCTCGCCGCCGCGGCGGTGGAGCTCCGGGCAGCGGGGCGG
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