mRNA_P-wetherbeei_contig10504.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10504.1.1
Unique NamemRNA_P-wetherbeei_contig10504.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10504.1.1 vs. uniprot
Match: D7FWI2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWI2_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.220e-13
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:  310 DMPARVRAHDAYFNALLNMIPPEFVLPHEAAGDEVYNSKFMKNKKNAAPVQVRKEESKKNKRARYDASHSKTVLKLQQEATAAAE 564
            ++ A ++ HD +F+ +L+MIP   VL  +   +  Y SK+MKNKK  AP Q +KEESKKNKRARY A + KT+L+ QQE   A E
Sbjct:  116 ELVATIQEHDEFFSRMLDMIPENLVLRAKEVAESSYASKYMKNKKGEAPKQSKKEESKKNKRARYAADNQKTLLEKQQERAKAGE 200
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BLAST of mRNA_P-wetherbeei_contig10504.1.1 vs. uniprot
Match: K8YSR8_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSR8_NANGC)

HSP 1 Score: 67.8 bits (164), Expect = 1.050e-9
Identity = 33/78 (42.31%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:  322 RVRAHDAYFNALLNMIPPEFVLPHEAAGDEVYNSKFMKNKKNAAPVQVRKEESKKNKRARYDASHSKTVLKLQQEATA 555
            R+  ++AYF+ ++N++P E  LP +   D   N+K+ KNK+ AAP Q++KEESK+ K+ ++D ++ KTV +LQ E  A
Sbjct:   12 RLAENNAYFSRMVNLVPAELYLPKDDNNDGEANAKYFKNKRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERAA 89
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BLAST of mRNA_P-wetherbeei_contig10504.1.1 vs. uniprot
Match: W7TVJ8_9STRA (RRP14 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVJ8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.420e-9
Identity = 32/78 (41.03%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:  322 RVRAHDAYFNALLNMIPPEFVLPHEAAGDEVYNSKFMKNKKNAAPVQVRKEESKKNKRARYDASHSKTVLKLQQEATA 555
            R+  ++AYF+ ++N++P E  LP +   +   N+K+ KNK+ AAP Q++KEESK+ K+ ++D ++ KTV +LQ E  A
Sbjct:   50 RLAENNAYFSRMVNLVPAELYLPKDDNNNGEANAKYFKNKRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERAA 127
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BLAST of mRNA_P-wetherbeei_contig10504.1.1 vs. uniprot
Match: UPI001B86F1EF (surfeit locus protein 6-domain-containing protein n=1 Tax=Suillus clintonianus TaxID=1904413 RepID=UPI001B86F1EF)

HSP 1 Score: 58.5 bits (140), Expect = 1.370e-6
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:  301 PMLDMPARVRAHDAYFNALLNMIPPEFVLP---HEAAGDEVYNSKFMKNKKNA-APVQVRKEESKKNKRARYDASHSKTVLKLQQEA 549
            P+  + A V AH+A F ALLN+IP ++ L    H+A  D+   SKF K+KKN  AP Q  KE SKK +R + D ++ K+V+ LQ EA
Sbjct:    5 PIEVLRASVEAHNATFEALLNLIPAKYYLAKDGHDA--DDAVPSKFQKHKKNQKAPKQAAKEASKKARRDKLDPANQKSVIDLQNEA 89
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BLAST of mRNA_P-wetherbeei_contig10504.1.1 vs. uniprot
Match: A0A0C3L255_9AGAM (RRP14 domain-containing protein (Fragment) n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3L255_9AGAM)

HSP 1 Score: 54.7 bits (130), Expect = 7.210e-6
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:  319 ARVRAHDAYFNALLNMIPPEFVLPHEAAGDEVYNSKFMKN-KKNAAPVQVRKEESKKNKRARYDASHSKTVLKLQQEATAAAEA 567
            A +  H+A F +LL +IPPEF +  +    E + S+F K+ KK AA  Q  KE +KK KR + D ++ KT+L +QQE  A+  A
Sbjct:   10 ASLEKHNAAFESLLRLIPPEFYI-EQPVNTEQWKSRFQKHTKKEAANKQAVKEATKKAKRQKLDPANHKTILDIQQEGEASKAA 92
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10504.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FWI2_ECTSI2.220e-1349.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8YSR8_NANGC1.050e-942.31Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
W7TVJ8_9STRA2.420e-941.03RRP14 domain-containing protein n=1 Tax=Nannochlor... [more]
UPI001B86F1EF1.370e-645.98surfeit locus protein 6-domain-containing protein ... [more]
A0A0C3L255_9AGAM7.210e-641.67RRP14 domain-containing protein (Fragment) n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10504contigP-wetherbeei_contig10504:27..866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWI2
Preferred nameSURF6
PFAMsRRP14,SURF6
Model size634
Max annot lvl2759|Eukaryota
KEGG koko:K10848
KEGG Pathwayko03420,ko03460,map03420,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0001652,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044452,GO:0044464,GO:0065003,GO:0070013,GO:0070925,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1990904
Exons2
Evalue3.64e-14
EggNOG OGsKOG2885@1|root,KOG2885@2759|Eukaryota
Ec32 ortholog descriptionRibosomal RNA-processing protein 14/surfeit locus protein 6, C-terminal domain
Ec32 orthologEc-26_006520.1
Descriptionribosomal large subunit biogenesis
Cds size633
COG categoryS
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.8886745-CDS-P-wetherbeei_contig10504:26..2241683185872.8886745-CDS-P-wetherbeei_contig10504:26..224Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10504 27..224 -
1683185872.9016855-CDS-P-wetherbeei_contig10504:431..8661683185872.9016855-CDS-P-wetherbeei_contig10504:431..866Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10504 432..866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10504.1.1prot_P-wetherbeei_contig10504.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10504 27..866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10504.1.1

>prot_P-wetherbeei_contig10504.1.1 ID=prot_P-wetherbeei_contig10504.1.1|Name=mRNA_P-wetherbeei_contig10504.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=211bp
TRKVKAPCEDPCTHPTPPSLEEGRGEMPHKKKGAGMVAPDQGQLREADLA
PSDQRKNNARRAGAEAGSTCDSKSSAWDGEVVSKALKRKRGEGSAPNALA
PMLDMPARVRAHDAYFNALLNMIPPEFVLPHEAAGDEVYNSKFMKNKKNA
APVQVRKEESKKNKRARYDASHSKTVLKLQQEATAAAEAVASDDADDGVD
GGGRGGSGGGG
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mRNA from alignment at P-wetherbeei_contig10504:27..866-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10504.1.1 ID=mRNA_P-wetherbeei_contig10504.1.1|Name=mRNA_P-wetherbeei_contig10504.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig10504:27..866- (Phaeothamnion wetherbeei SAG_119_79)
ACAAGGAAAGTCAAAGCGCCCTGCGAGGACCCGTGCACCCACCCCACTCC
GCCGTCTCTCGAAGAAGGCCGTGGCGAGATGCCGCACAAGAAGAAGGGCG
CCGGGATGGTGGCCCCAGATCAAGGGCAGCTACGAGAGGCTGACCTTGCT
CCGAGCGACCAGAGAAAAAACAACGCCCGGCGCGCCGGTGCGGAAGCCGG
CTCGACCTGTGACAGCAAATCGTCGGCCTGGGACGGCGAGGTCGTCAGCA
AGGCTCTTAAGCGGAAGCGAGGAGAAGGGAGCGCCCCGAATGCTTTAGCC
CCTATGCTCGACATGCCAGCCCGCGTGCGGGCACACGACGCCTACTTCAA
CGCGCTGTTGAACATGATCCCGCCGGAGTTTGTGCTGCCTCACGAGGCGG
CGGGCGACGAGGTGTACAACAGCAAGTTTATGAAGGTGTGTGGCTTTCGG
GGACAAGGAAGGTTTTCCTCTGAAATCCAGGGCTATCTTTCATAAATGCT
CTGAGAAAGGCATATCATGCTTGCTTTTGTCAACTTTGGTCGAAGCGCTC
TCGTAGCTTCCGTTGATAACCTGCTGTAAATGGTTTGCCGTCCCCGGCTC
CGTCTTCTCTGCACATGCCCTGCGCACCGCCTGCCCGAGCAGAACAAGAA
GAACGCCGCCCCGGTGCAGGTTAGGAAAGAGGAGTCGAAGAAGAATAAAC
GGGCGCGATACGACGCCTCACACTCCAAAACAGTGCTCAAACTGCAGCAG
GAGGCGACCGCGGCGGCCGAGGCGGTCGCTTCGGACGACGCCGACGATGG
CGTCGACGGCGGCGGCCGCGGCGGCAGCGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10504:27..866-

>mRNA_P-wetherbeei_contig10504.1.1 ID=mRNA_P-wetherbeei_contig10504.1.1|Name=mRNA_P-wetherbeei_contig10504.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=633bp|location=Sequence derived from alignment at P-wetherbeei_contig10504:27..866- (Phaeothamnion wetherbeei SAG_119_79)
ACAAGGAAAGTCAAAGCGCCCTGCGAGGACCCGTGCACCCACCCCACTCC
GCCGTCTCTCGAAGAAGGCCGTGGCGAGATGCCGCACAAGAAGAAGGGCG
CCGGGATGGTGGCCCCAGATCAAGGGCAGCTACGAGAGGCTGACCTTGCT
CCGAGCGACCAGAGAAAAAACAACGCCCGGCGCGCCGGTGCGGAAGCCGG
CTCGACCTGTGACAGCAAATCGTCGGCCTGGGACGGCGAGGTCGTCAGCA
AGGCTCTTAAGCGGAAGCGAGGAGAAGGGAGCGCCCCGAATGCTTTAGCC
CCTATGCTCGACATGCCAGCCCGCGTGCGGGCACACGACGCCTACTTCAA
CGCGCTGTTGAACATGATCCCGCCGGAGTTTGTGCTGCCTCACGAGGCGG
CGGGCGACGAGGTGTACAACAGCAAGTTTATGAAGAACAAGAAGAACGCC
GCCCCGGTGCAGGTTAGGAAAGAGGAGTCGAAGAAGAATAAACGGGCGCG
ATACGACGCCTCACACTCCAAAACAGTGCTCAAACTGCAGCAGGAGGCGA
CCGCGGCGGCCGAGGCGGTCGCTTCGGACGACGCCGACGATGGCGTCGAC
GGCGGCGGCCGCGGCGGCAGCGGCGGCGGCGGC
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