mRNA_P-wetherbeei_contig10498.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10498.1.1
Unique NamemRNA_P-wetherbeei_contig10498.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10498.1.1 vs. uniprot
Match: A0A835ZDR9_9STRA (Lon protease C-terminal proteolytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDR9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.080e-11
Identity = 52/147 (35.37%), Postives = 67/147 (45.58%), Query Frame = 1 
Query:    1 SSPGRDGLRYSHLDIALRSGGLPVEELLAELTALWHQLFDNAVAWLPEDCGSWRRHTSANLMALE-------VKAQPIAVGNTLRRHFASTF-SQNWPYLDELLQDAGQFGMGVSGGVEIVPAVARFIHESGEWLLSLDAANAFNSI 417
            S  G  GLRYSHL  ALR+      E  A LT  W Q      A LP+    W+ H +  L  L         K +PI  G  L+R   S + +    +L ELL+  GQ+G+ VS G E      +  +E G W   LD  NAFN +
Sbjct: 1060 SGAGPSGLRYSHLQDALRTSW-GRHEFAAVLTR-WLQAVMREAARLPD--AFWQLHGAGRLTLLAEQQEDGTAKQRPIVCGEVLQRLCTSVYVADRKDFLAELLEPDGQYGVAVSAGAEKAAMAGKLAYELGHWQFMLDLKNAFNMV 1202
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BLAST of mRNA_P-wetherbeei_contig10498.1.1 vs. uniprot
Match: A0A836CGN9_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-11
Identity = 52/147 (35.37%), Postives = 67/147 (45.58%), Query Frame = 1 
Query:    1 SSPGRDGLRYSHLDIALRSGGLPVEELLAELTALWHQLFDNAVAWLPEDCGSWRRHTSANLMALE-------VKAQPIAVGNTLRRHFASTF-SQNWPYLDELLQDAGQFGMGVSGGVEIVPAVARFIHESGEWLLSLDAANAFNSI 417
            S  G  GLRYSHL  ALR+      E  A LT  W Q      A LP+    W+ H +  L  L         K +PI  G  L+R   S + +    +L ELL+  GQ+G+ VS G E      +  +E G W   LD  NAFN +
Sbjct:  336 SGAGLSGLRYSHLQDALRTSW-GRHEFAAVLTR-WLQTVMREAARLPD--AFWQLHGAGRLTPLAEQQEDGTAKQRPIVCGEVLQRLCTSVYVADRKDFLAELLEPDGQYGVAVSAGAEKAAMAGKLAYELGHWQFMLDLKNAFNMV 478
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BLAST of mRNA_P-wetherbeei_contig10498.1.1 vs. uniprot
Match: A0A836CHA2_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHA2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.540e-11
Identity = 49/146 (33.56%), Postives = 71/146 (48.63%), Query Frame = 1 
Query:   10 GRDGLRYSHLDIALRSGGLPVEELLAELTALWHQLFDNAVAWLPEDCGSWRRHTSANLMALEV-------KAQPIAVGNTLRRHFAST---FSQNWPYLDELLQDAGQFGMGVSGGVEIVPAVARFIHESGEWLLSLDAANAFNSI 417
            G  GLRYSHL  ALR+     ++ ++     W +L     A +P+D   W+ H +A L  L         K +PIA G  L+R    T     +   +L ELLQ  GQ+G+ VS G E      +  +E G W  ++D  NAFN++
Sbjct: 2495 GPSGLRYSHLQDALRTTW--GKQQMSLTLVRWIELVMRDAARIPDDF--WQLHAAARLTPLTERQADGTPKLRPIACGEVLQRLPVCTSVYVGERKGFLAELLQPDGQYGVAVSAGAEKAALAGKLAYELGHWQFNVDLRNAFNAL 2636
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BLAST of mRNA_P-wetherbeei_contig10498.1.1 vs. uniprot
Match: A0A835Z1Y7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Y7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.140e-6
Identity = 43/119 (36.13%), Postives = 55/119 (46.22%), Query Frame = 1 
Query:    1 SSPGRDGLRYSHLDIALRSGGLPVEELLAELTALWHQLFDNAVAWLPEDCGSWRRHTSANLMALE-------VKAQPIAVGNTLRRHFASTF-SQNWPYLDELLQDAGQFGMGVSGGVE 333
            S  G  GLRYSHL  ALR+      E  A LT  W Q      A LP+    W+ H +  L  L         K +PI  G  L+R   S + +    +L ELL+  GQ+G+ VS G E
Sbjct:   29 SGAGPSGLRYSHLQDALRTSW-GRHEFAAVLTR-WLQTVTREAARLPD--AFWQLHGAGRLTPLAEQQEDGTAKQRPIVCGEVLQRLCTSVYVADRKDFLAELLEPDGQYGVAVSAGAE 143
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BLAST of mRNA_P-wetherbeei_contig10498.1.1 vs. uniprot
Match: A0A835YZF6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.810e-5
Identity = 43/119 (36.13%), Postives = 55/119 (46.22%), Query Frame = 1 
Query:    1 SSPGRDGLRYSHLDIALRSGGLPVEELLAELTALWHQLFDNAVAWLPEDCGSWRRHTSANLMALE-------VKAQPIAVGNTLRRHFASTF-SQNWPYLDELLQDAGQFGMGVSGGVE 333
            S  G  GLRYSHL  ALR+      E  A LT  W Q      A LP+    W+ H +  L  L         K +PI  G  L+R   S + +    +L ELL+  GQ+G+ VS G E
Sbjct:  532 SGAGPSGLRYSHLQDALRTSW-GRHEFAAVLTR-WLQTVMREAARLPD--AFWQLHGAGRLTPLAEQQEDGTAKQRPIVCGEVLQRLCTSVYVADRKDFLAELLEPDGQYGVAVSAGAE 646
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10498.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835ZDR9_9STRA1.080e-1135.37Lon protease C-terminal proteolytic domain-contain... [more]
A0A836CGN9_9STRA1.100e-1135.37Reverse transcriptase domain-containing protein n=... [more]
A0A836CHA2_9STRA1.540e-1133.56Reverse transcriptase domain-containing protein n=... [more]
A0A835Z1Y7_9STRA5.140e-636.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZF6_9STRA2.810e-536.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10498contigP-wetherbeei_contig10498:1272..1688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15708731
Preferred nameCWC27
PFAMsPro_isomerase
Model size417
Max annot lvl2759|Eukaryota
KEGG koko:K01802,ko:K12737
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0030054,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0055044,GO:0070013,GO:0071012,GO:0071013,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990904
Exons1
Evalue5.42e-05
EggNOG OGsCOG0652@1|root,KOG0885@2759|Eukaryota
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
Cds size417
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.0887134-CDS-P-wetherbeei_contig10498:1271..16881683185872.0887134-CDS-P-wetherbeei_contig10498:1271..1688Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10498 1272..1688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10498.1.1prot_P-wetherbeei_contig10498.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10498 1272..1688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10498.1.1

>prot_P-wetherbeei_contig10498.1.1 ID=prot_P-wetherbeei_contig10498.1.1|Name=mRNA_P-wetherbeei_contig10498.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
SSPGRDGLRYSHLDIALRSGGLPVEELLAELTALWHQLFDNAVAWLPEDC
GSWRRHTSANLMALEVKAQPIAVGNTLRRHFASTFSQNWPYLDELLQDAG
QFGMGVSGGVEIVPAVARFIHESGEWLLSLDAANAFNSI
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mRNA from alignment at P-wetherbeei_contig10498:1272..1688+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10498.1.1 ID=mRNA_P-wetherbeei_contig10498.1.1|Name=mRNA_P-wetherbeei_contig10498.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig10498:1272..1688+ (Phaeothamnion wetherbeei SAG_119_79)
TCGTCGCCGGGGCGCGACGGCCTCCGCTACAGCCACTTGGACATTGCTCT
CCGCTCAGGCGGACTTCCGGTGGAAGAACTCTTGGCGGAGCTGACGGCGC
TGTGGCACCAGCTGTTCGACAATGCCGTCGCCTGGCTGCCGGAGGACTGT
GGTTCCTGGCGGCGGCACACGTCGGCCAATCTGATGGCTCTCGAAGTGAA
AGCGCAGCCGATTGCCGTCGGCAACACGCTGCGCCGCCATTTCGCCTCAA
CTTTCTCCCAAAATTGGCCGTACTTGGACGAGCTGCTGCAGGATGCGGGA
CAGTTTGGAATGGGCGTGAGCGGCGGTGTTGAGATCGTGCCAGCGGTGGC
TCGCTTCATTCATGAGAGCGGCGAGTGGCTGCTGTCGCTGGATGCCGCGA
ATGCGTTCAACTCCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10498:1272..1688+

>mRNA_P-wetherbeei_contig10498.1.1 ID=mRNA_P-wetherbeei_contig10498.1.1|Name=mRNA_P-wetherbeei_contig10498.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig10498:1272..1688+ (Phaeothamnion wetherbeei SAG_119_79)
TCGTCGCCGGGGCGCGACGGCCTCCGCTACAGCCACTTGGACATTGCTCT
CCGCTCAGGCGGACTTCCGGTGGAAGAACTCTTGGCGGAGCTGACGGCGC
TGTGGCACCAGCTGTTCGACAATGCCGTCGCCTGGCTGCCGGAGGACTGT
GGTTCCTGGCGGCGGCACACGTCGGCCAATCTGATGGCTCTCGAAGTGAA
AGCGCAGCCGATTGCCGTCGGCAACACGCTGCGCCGCCATTTCGCCTCAA
CTTTCTCCCAAAATTGGCCGTACTTGGACGAGCTGCTGCAGGATGCGGGA
CAGTTTGGAATGGGCGTGAGCGGCGGTGTTGAGATCGTGCCAGCGGTGGC
TCGCTTCATTCATGAGAGCGGCGAGTGGCTGCTGTCGCTGGATGCCGCGA
ATGCGTTCAACTCCATC
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