mRNA_P-wetherbeei_contig10483.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10483.2.1
Unique NamemRNA_P-wetherbeei_contig10483.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10483.2.1 vs. uniprot
Match: A0A5N6LWR3_9ASTR (ZZ-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LWR3_9ASTR)

HSP 1 Score: 63.2 bits (152), Expect = 1.960e-9
Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   43 QVRNESDEAWPDNCELLCLGGNGAQMAGVAAATTQPGGLRQGAARDVTVTLTAPRQPGVYEAFFRMRRPGGEKFGQRLWVSVTV 294
            ++RN     WP   +L  +GG+    +          GL      D+ VT TAP  PG Y +++RM  P G+KFGQRLWVS+ V
Sbjct:  892 RMRNNGSIIWPCGSQLQWIGGDRLSNSDSVDVEIPVDGLHVDKEIDIAVTFTAPELPGRYVSYWRMASPSGQKFGQRLWVSIQV 975          
BLAST of mRNA_P-wetherbeei_contig10483.2.1 vs. uniprot
Match: A0A1Q3B982_CEPFO (PB1 domain-containing protein/ZZ domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3B982_CEPFO)

HSP 1 Score: 62.4 bits (150), Expect = 3.560e-9
Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 1
Query:   43 QVRNESDEAWPDNCELLCLGGNGAQMAGVAAATTQPGGLRQGAARDVTVTLTAPRQPGVYEAFFRMRRPGGEKFGQRLWVSVTV 294
            ++RN    AWP   +L+ +GG+    A  A     PGG+      D+ V  TAP  PG Y +++RM  P   KFGQR+WV V V
Sbjct:  431 RMRNNGGIAWPQETQLVWIGGDRFSDAVSAEIQIPPGGVPVDGELDIAVDFTAPELPGRYISYWRMMTPSVGKFGQRVWVLVQV 514          
BLAST of mRNA_P-wetherbeei_contig10483.2.1 vs. uniprot
Match: A0A2R5G144_9STRA (Next to BRCA1 1 protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G144_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.870e-9
Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   43 QVRNES-DEAWPDNCELLCLGGNGAQMAGVAAATTQPGGLRQGAARDVTVTLTAPRQPGVYEAFFRMRRPGGEKFGQRLWVSVTV 294
            ++ N S D+AWPD+  L+C+GG+  +         Q   LR+ +A D++V L AP + G Y  ++R+   GG++FG RLW+ +TV
Sbjct:  635 RIANPSADQAWPDDVRLVCVGGSRMEGPDEGVPVAQ---LREQSAADLSVELVAPAESGRYVGYWRLMS-GGQRFGHRLWIDITV 715          
BLAST of mRNA_P-wetherbeei_contig10483.2.1 vs. uniprot
Match: A0A7S0MRM9_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MRM9_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 8.450e-9
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   43 QVRNESDEAWPDN-CELLCLGGNGAQMAGVAAATTQPGGLRQGAARDVTVTLTAPRQPGVYEAFFRMRRPGGEKFGQRLWVSVTV 294
            +VRN+S  AWPD   EL+ + G  +       A      L  G   +++V +TAP  PG+Y+ F+R+R P G KFGQRL  SV V
Sbjct:  172 RVRNDSPRAWPDGPIELVYVSGKASDRLTPQDAYPVEAKLAPGEETELSVEITAPTAPGLYQGFWRLRGPKGCKFGQRLGCSVLV 256          
BLAST of mRNA_P-wetherbeei_contig10483.2.1 vs. uniprot
Match: A0A2U1P8I9_ARTAN (PB1 domain, Zinc finger, ZZ-type, UBA-like, Next to BRCA1, central domain protein n=3 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1P8I9_ARTAN)

HSP 1 Score: 59.3 bits (142), Expect = 4.340e-8
Identity = 31/84 (36.90%), Postives = 42/84 (50.00%), Query Frame = 1
Query:   43 QVRNESDEAWPDNCELLCLGGNGAQMAGVAAATTQPGGLRQGAARDVTVTLTAPRQPGVYEAFFRMRRPGGEKFGQRLWVSVTV 294
            ++RN     WP   +L  +GG+               GL      DV V  TAP  PG Y +++RM  PGG+KFGQR+WV + V
Sbjct:  495 RMRNNGSITWPHGSQLQWIGGDRISNTLSVDVEIPADGLPVDNELDVAVDFTAPELPGRYVSYWRMAAPGGQKFGQRVWVLIQV 578          
BLAST of mRNA_P-wetherbeei_contig10483.2.1 vs. uniprot
Match: A0A8K0G3S3_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G3S3_9COLE)

HSP 1 Score: 58.2 bits (139), Expect = 6.210e-8
Identity = 30/83 (36.14%), Postives = 44/83 (53.01%), Query Frame = 1
Query:   46 VRNESDEAWPDNCELLCLGGNGAQMAGVAAATTQPGGLRQGAARDVTVTLTAPRQPGVYEAFFRMRRPGGEKFGQRLWVSVTV 294
            V N   E WP  C L C GG+      + A  T+   L+ G    +++ +T+P QPG+Y++ +RM  P G  FG  LW  +TV
Sbjct:  110 VMNNGTETWPSGCFLQCAGGDS-----LGAIRTEFPCLKPGDYTFLSLQMTSPVQPGIYQSKWRMCTPSGSYFGDPLWAIITV 187          
BLAST of mRNA_P-wetherbeei_contig10483.2.1 vs. uniprot
Match: A0A553NE61_TIGCA (N_BRCA1_IG domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553NE61_TIGCA)

HSP 1 Score: 57.4 bits (137), Expect = 1.130e-7
Identity = 35/96 (36.46%), Postives = 49/96 (51.04%), Query Frame = 1
Query:    7 AAPPASSLHPPSQVRNESDEAWPDNCELLCLGGNGAQMAGVAAATTQPGGLRQGAARDVTVTLTAPRQPGVYEAFFRMRRPGGEKFGQRLWVSVTV 294
            + PPA+       V N   E WP+ C L+    +G QMA V     +   L  G   DV+V +T+P  PG+YE+ +RM    G  FG  +WV +TV
Sbjct:   90 SVPPATRFTKTWAVTNPGAERWPEGCVLVFS--SGLQMAEVGRIGVRS--LAPGEQADVSVDMTSPAAPGIYESKWRMSTSSGLFFGDTIWVIITV 181          
BLAST of mRNA_P-wetherbeei_contig10483.2.1 vs. uniprot
Match: A0A131XCI0_9ACAR (N_BRCA1_IG domain-containing protein n=10 Tax=Ixodidae TaxID=6939 RepID=A0A131XCI0_9ACAR)

HSP 1 Score: 56.6 bits (135), Expect = 2.970e-7
Identity = 31/96 (32.29%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    7 AAPPASSLHPPSQVRNESDEAWPDNCELLCLGGNGAQMAGVAAATTQPGGLRQGAARDVTVTLTAPRQPGVYEAFFRMRRPGGEKFGQRLWVSVTV 294
            A PP +      +++N  D  WP  C L  +GG+   +  +   + +   LR G   DV+V +++P +PGVY+  +RM   GG+ FG+ +W  +TV
Sbjct:   87 AVPPNTRFVKTWRIQNTGDTDWPPACSLKFVGGD--HLGHMNRVSVES--LRPGHTTDVSVEMSSPGKPGVYQGQWRMATMGGQMFGEVIWAILTV 178          
BLAST of mRNA_P-wetherbeei_contig10483.2.1 vs. uniprot
Match: UPI0013F27710 (protein ILRUN isoform X2 n=1 Tax=Odontomachus brunneus TaxID=486640 RepID=UPI0013F27710)

HSP 1 Score: 53.1 bits (126), Expect = 2.180e-6
Identity = 30/96 (31.25%), Postives = 51/96 (53.12%), Query Frame = 1
Query:    7 AAPPASSLHPPSQVRNESDEAWPDNCELLCLGGNGAQMAGVAAATTQPGGLRQGAARDVTVTLTAPRQPGVYEAFFRMRRPGGEKFGQRLWVSVTV 294
            + PP+++     +V+N   EAWP    L  + G   +  G       P G ++    +++VTL++P +PGVYE+ +RM    G  FG+ +W  +TV
Sbjct:   56 SVPPSTNFQKSWRVQNSGTEAWPHGIHLELISG---ERMGTTRIAVPPIGPKE--TTELSVTLSSPSEPGVYESKWRMVTANGLYFGEVIWGIITV 146          
BLAST of mRNA_P-wetherbeei_contig10483.2.1 vs. uniprot
Match: A0A7S0QTT3_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QTT3_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 2.780e-6
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 1
Query:   55 ESDEAWPDN-CELLCLGGNGAQMAGVAAATTQPGGLRQGAARDVTVTLTAPRQPGVYEAFFRMRRPGGEKFGQRLWVSVTV 294
            +S  +WPD   EL+ + G  +       A      L  G   +++V +TAP  PG+Y+ F+R+R P G KFGQRL  SV V
Sbjct:    1 DSPRSWPDGPIELVYVSGKASDRLTPQDAYPVEAKLAPGEETELSVEITAPTAPGLYQGFWRLRGPKGCKFGQRLGCSVLV 81          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10483.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A5N6LWR3_9ASTR1.960e-938.10ZZ-type domain-containing protein n=1 Tax=Mikania ... [more]
A0A1Q3B982_CEPFO3.560e-939.29PB1 domain-containing protein/ZZ domain-containing... [more]
A0A2R5G144_9STRA4.870e-937.65Next to BRCA1 1 protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S0MRM9_9CHLO8.450e-941.18Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A2U1P8I9_ARTAN4.340e-836.90PB1 domain, Zinc finger, ZZ-type, UBA-like, Next t... [more]
A0A8K0G3S3_9COLE6.210e-836.14Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A553NE61_TIGCA1.130e-736.46N_BRCA1_IG domain-containing protein n=1 Tax=Tigri... [more]
A0A131XCI0_9ACAR2.970e-732.29N_BRCA1_IG domain-containing protein n=10 Tax=Ixod... [more]
UPI0013F277102.180e-631.25protein ILRUN isoform X2 n=1 Tax=Odontomachus brun... [more]
A0A7S0QTT3_9CHLO2.780e-638.27Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10483contigP-wetherbeei_contig10483:567..869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo156057
PFAMsN_BRCA1_IG,PB1
Model size303
Max annot lvl4776|Peronosporales
KEGG koko:K17987
KEGG Pathwayko04137,map04137
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.55e-10
EggNOG OGsKOG4351@1|root,KOG4351@2759|Eukaryota,3Q8PI@4776|Peronosporales
DescriptionIg-like domain from next to BRCA1 gene
Cds size303
COG categoryS
BRITEko00000,ko00001,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185871.518588-CDS-P-wetherbeei_contig10483:566..8691683185871.518588-CDS-P-wetherbeei_contig10483:566..869Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10483 567..869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10483.2.1prot_P-wetherbeei_contig10483.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10483 567..869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10483.2.1

>prot_P-wetherbeei_contig10483.2.1 ID=prot_P-wetherbeei_contig10483.2.1|Name=mRNA_P-wetherbeei_contig10483.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
PPAAPPASSLHPPSQVRNESDEAWPDNCELLCLGGNGAQMAGVAAATTQP
GGLRQGAARDVTVTLTAPRQPGVYEAFFRMRRPGGEKFGQRLWVSVTVPT
L
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mRNA from alignment at P-wetherbeei_contig10483:567..869+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10483.2.1 ID=mRNA_P-wetherbeei_contig10483.2.1|Name=mRNA_P-wetherbeei_contig10483.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig10483:567..869+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCGGCTGCACCGCCGGCTTCTTCGCTGCATCCGCCCTCGCAGGTACG CAATGAGAGCGACGAGGCATGGCCCGACAACTGCGAGCTGCTGTGCCTCG GCGGCAACGGCGCTCAGATGGCGGGCGTGGCGGCAGCGACGACCCAGCCA GGCGGGCTCCGCCAGGGCGCCGCTCGCGACGTGACGGTGACGTTGACTGC GCCGCGGCAGCCGGGCGTCTACGAGGCGTTCTTCCGGATGCGACGACCCG GCGGCGAAAAGTTCGGGCAGCGGCTGTGGGTTTCCGTGACGGTGCCCACC CTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10483:567..869+

>mRNA_P-wetherbeei_contig10483.2.1 ID=mRNA_P-wetherbeei_contig10483.2.1|Name=mRNA_P-wetherbeei_contig10483.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig10483:567..869+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCGGCTGCACCGCCGGCTTCTTCGCTGCATCCGCCCTCGCAGGTACG
CAATGAGAGCGACGAGGCATGGCCCGACAACTGCGAGCTGCTGTGCCTCG
GCGGCAACGGCGCTCAGATGGCGGGCGTGGCGGCAGCGACGACCCAGCCA
GGCGGGCTCCGCCAGGGCGCCGCTCGCGACGTGACGGTGACGTTGACTGC
GCCGCGGCAGCCGGGCGTCTACGAGGCGTTCTTCCGGATGCGACGACCCG
GCGGCGAAAAGTTCGGGCAGCGGCTGTGGGTTTCCGTGACGGTGCCCACC
CTC
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