mRNA_P-wetherbeei_contig10479.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10479.2.1
Unique NamemRNA_P-wetherbeei_contig10479.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10479.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10479contigP-wetherbeei_contig10479:946..2339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1396
Hectar predicted targeting categoryother localisation
Exons1
Cds size1266
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185871.102166-CDS-P-wetherbeei_contig10479:945..22111683185871.102166-CDS-P-wetherbeei_contig10479:945..2211Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10479 946..2211 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185871.11109-UTR-P-wetherbeei_contig10479:2211..23391683185871.11109-UTR-P-wetherbeei_contig10479:2211..2339Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10479 2212..2339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10479.2.1prot_P-wetherbeei_contig10479.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10479 946..2211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10479.2.1

>prot_P-wetherbeei_contig10479.2.1 ID=prot_P-wetherbeei_contig10479.2.1|Name=mRNA_P-wetherbeei_contig10479.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=422bp
MTESLLFGGFLINQTNSAVSRPDAGAYGALLTDLAKCGDIDGLKQAWAAA
SKALLPTGELKQLPAAAIIRAYGARIRALRKEQQEQPQQGKGPCVDESHQ
AETSEDAAPRGGLGATLAGRREAVLLRDAEAVFQASMATSRAAAGAAAEG
SGKNNNTKSDSSSVRHRPDADKVAPASEDSTLHNAIIYAYCQAGRLDKAL
AVLKTLIDDPRRSPNPYACTGLVRNLANDGQPFAALRLLAEFERRGIGIV
PTRGLYRSVALACIRDAEALSAAGAAANRGKSRPGAAAAAMSAAKDVEVK
VVTAEPSVAAENEDDSAALAGLRHQRRRQGTTGGRGGCALRARSSLVTEV
LRQRLDDAAEALDAMERHNLGPVSPIVSRHLLRVAADAAEPRHAERCIVR
LRAAGHDVTSADLARVAHAQTA
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mRNA from alignment at P-wetherbeei_contig10479:946..2339-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10479.2.1 ID=mRNA_P-wetherbeei_contig10479.2.1|Name=mRNA_P-wetherbeei_contig10479.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1394bp|location=Sequence derived from alignment at P-wetherbeei_contig10479:946..2339- (Phaeothamnion wetherbeei SAG_119_79)
CATGGATGACGTCTTGCTTGAAATGTTAGATGTAGCTTGTATAGAACCCG
AGCTTTGTGAAAGAGTTGGTACCAACACGATTCGCTAAGATATGCTTGAG
TACACTATGTTCCTTTTCTTTCGAGCATATGACAGAAAGTCTCTTGTTTG
GAGGCTTTCTGATCAACCAAACAAACTCGGCTGTCAGCAGGCCGGATGCA
GGAGCGTATGGCGCCCTGCTCACGGACTTGGCAAAGTGCGGCGACATCGA
CGGCCTGAAGCAAGCGTGGGCTGCAGCGTCCAAGGCGCTCCTGCCGACAG
GAGAGCTGAAGCAGCTGCCCGCGGCGGCCATAATCCGAGCGTACGGCGCG
CGGATCCGAGCCTTACGGAAGGAGCAGCAGGAGCAACCGCAGCAGGGGAA
GGGACCCTGTGTGGACGAGAGCCACCAAGCTGAAACCAGCGAAGACGCCG
CTCCGCGTGGTGGCCTCGGCGCCACGCTGGCCGGCCGCCGAGAAGCGGTT
TTGCTGCGGGATGCCGAGGCCGTGTTCCAGGCTTCAATGGCGACATCGAG
GGCGGCAGCAGGGGCGGCGGCAGAAGGGAGTGGTAAAAACAACAACACTA
AGAGCGATAGCAGCAGCGTTCGCCACCGCCCAGATGCCGACAAAGTGGCT
CCTGCTTCCGAGGATTCGACGCTGCACAACGCGATCATTTATGCCTACTG
TCAGGCCGGTCGGCTGGACAAGGCGCTGGCGGTGCTTAAAACGCTGATTG
ACGACCCGCGGAGATCGCCGAACCCGTACGCCTGCACGGGATTGGTTCGT
AATCTGGCCAACGACGGCCAGCCGTTCGCTGCGCTGCGCCTGCTGGCCGA
GTTTGAGCGTCGGGGGATCGGAATTGTCCCCACGCGAGGCCTTTATCGCT
CCGTTGCGTTGGCCTGCATCAGGGATGCCGAGGCTCTTTCAGCGGCGGGG
GCGGCAGCCAACCGCGGGAAGTCCCGGCCCGGCGCAGCTGCTGCAGCCAT
GTCGGCGGCGAAGGACGTTGAGGTGAAGGTGGTGACTGCAGAACCGTCAG
TGGCAGCAGAAAACGAGGACGATTCGGCGGCGCTGGCGGGTCTGCGGCAT
CAGCGGCGGCGGCAGGGGACGACCGGCGGTCGCGGCGGCTGCGCCCTCAG
GGCGCGCAGTAGCCTGGTGACGGAGGTGCTGCGGCAGCGGCTGGACGACG
CGGCGGAGGCGCTGGACGCGATGGAGCGCCATAATCTCGGTCCGGTCTCG
CCCATCGTCTCGCGGCACCTGCTACGTGTCGCCGCCGATGCCGCCGAGCC
CCGCCACGCCGAGCGCTGCATCGTCCGGCTGCGGGCCGCCGGCCACGACG
TCACCAGCGCCGACCTCGCCCGCGTGGCGCACGCACAGACGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10479:946..2339-

>mRNA_P-wetherbeei_contig10479.2.1 ID=mRNA_P-wetherbeei_contig10479.2.1|Name=mRNA_P-wetherbeei_contig10479.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1266bp|location=Sequence derived from alignment at P-wetherbeei_contig10479:946..2339- (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGAAAGTCTCTTGTTTGGAGGCTTTCTGATCAACCAAACAAACTC
GGCTGTCAGCAGGCCGGATGCAGGAGCGTATGGCGCCCTGCTCACGGACT
TGGCAAAGTGCGGCGACATCGACGGCCTGAAGCAAGCGTGGGCTGCAGCG
TCCAAGGCGCTCCTGCCGACAGGAGAGCTGAAGCAGCTGCCCGCGGCGGC
CATAATCCGAGCGTACGGCGCGCGGATCCGAGCCTTACGGAAGGAGCAGC
AGGAGCAACCGCAGCAGGGGAAGGGACCCTGTGTGGACGAGAGCCACCAA
GCTGAAACCAGCGAAGACGCCGCTCCGCGTGGTGGCCTCGGCGCCACGCT
GGCCGGCCGCCGAGAAGCGGTTTTGCTGCGGGATGCCGAGGCCGTGTTCC
AGGCTTCAATGGCGACATCGAGGGCGGCAGCAGGGGCGGCGGCAGAAGGG
AGTGGTAAAAACAACAACACTAAGAGCGATAGCAGCAGCGTTCGCCACCG
CCCAGATGCCGACAAAGTGGCTCCTGCTTCCGAGGATTCGACGCTGCACA
ACGCGATCATTTATGCCTACTGTCAGGCCGGTCGGCTGGACAAGGCGCTG
GCGGTGCTTAAAACGCTGATTGACGACCCGCGGAGATCGCCGAACCCGTA
CGCCTGCACGGGATTGGTTCGTAATCTGGCCAACGACGGCCAGCCGTTCG
CTGCGCTGCGCCTGCTGGCCGAGTTTGAGCGTCGGGGGATCGGAATTGTC
CCCACGCGAGGCCTTTATCGCTCCGTTGCGTTGGCCTGCATCAGGGATGC
CGAGGCTCTTTCAGCGGCGGGGGCGGCAGCCAACCGCGGGAAGTCCCGGC
CCGGCGCAGCTGCTGCAGCCATGTCGGCGGCGAAGGACGTTGAGGTGAAG
GTGGTGACTGCAGAACCGTCAGTGGCAGCAGAAAACGAGGACGATTCGGC
GGCGCTGGCGGGTCTGCGGCATCAGCGGCGGCGGCAGGGGACGACCGGCG
GTCGCGGCGGCTGCGCCCTCAGGGCGCGCAGTAGCCTGGTGACGGAGGTG
CTGCGGCAGCGGCTGGACGACGCGGCGGAGGCGCTGGACGCGATGGAGCG
CCATAATCTCGGTCCGGTCTCGCCCATCGTCTCGCGGCACCTGCTACGTG
TCGCCGCCGATGCCGCCGAGCCCCGCCACGCCGAGCGCTGCATCGTCCGG
CTGCGGGCCGCCGGCCACGACGTCACCAGCGCCGACCTCGCCCGCGTGGC
GCACGCACAGACGGCG
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