mRNA_P-wetherbeei_contig1044.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1044.3.1
Unique NamemRNA_P-wetherbeei_contig1044.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1044.3.1 vs. uniprot
Match: A0A836C710_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C710_9STRA)

HSP 1 Score: 218 bits (554), Expect = 3.700e-66
Identity = 110/181 (60.77%), Postives = 136/181 (75.14%), Query Frame = 1
Query:  172 LGGGLGPLTPEQADGRPML-RNLPVLRYWPLEKTGEPPPPNPAWLGESCAVRLVAGTVSGFGAGLLFGMFLGAMGDMQPIQMINGREVPQAPLREQMRAAYRQTSTRSLSMARNFGTFSALLLGTECVVEKVRAKHDVMNSVYSGCVAGAALAAKQGPQAMCIGCIGVAAFSAAIDSIMGH 711
            +GGGL P T ++  GRP+L + LP ++ W + +TG   PP P  LGESC  RL+ GT  GFG GLLFGMFLGAMGDMQPIQ+INGREVPQAPL EQ RAAY  T +RSL MA+NF +FSA+ + +ECV+EK+R KHD+MNSVY GC+ G A   K GP+    GC+G+AAFSA ID++MGH
Sbjct:   20 VGGGLSPSTEQELGGRPLLLKFLPTVKAWDM-RTGGTMPPQPPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQPIQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 199          
BLAST of mRNA_P-wetherbeei_contig1044.3.1 vs. uniprot
Match: A0A6H5KF19_9PHAE (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF19_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 5.790e-57
Identity = 93/142 (65.49%), Postives = 112/142 (78.87%), Query Frame = 1
Query:  286 PNPAWLGESCAVRLVAGTVSGFGAGLLFGMFLGAMGDMQPIQMINGREVPQAPLREQMRAAYRQTSTRSLSMARNFGTFSALLLGTECVVEKVRAKHDVMNSVYSGCVAGAALAAKQGPQAMCIGCIGVAAFSAAIDSIMGH 711
            P P  L ESC  +L+ GTV G G G +FG+FLGAMGDMQP+QMINGREVPQAP REQ R AY+QT+ RSLSM RNF +FSA+ +G+ECV+EK+R K D+MNSVY+GC  GAA   KQGPQA C GC+G+A FSA +D +MGH
Sbjct:   51 PTPPVLTESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 192          
BLAST of mRNA_P-wetherbeei_contig1044.3.1 vs. uniprot
Match: A0A7S2P255_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P255_9STRA)

HSP 1 Score: 154 bits (388), Expect = 3.840e-41
Identity = 85/176 (48.30%), Postives = 110/176 (62.50%), Query Frame = 1
Query:  190 PLTPEQADGRPMLRNLPVLRYW-PLEKTGEPPPPNPAWLGESCAVRLVAGTVSGFGAGLLFGMFLGAMGDMQP-IQMINGREVPQAPLREQMRAAYRQTSTRSLSMARNFGTFSALLLGTECVVEKVRAKHDVMNSVYSGCVAGAALAAKQGPQAMCIGCIGVAAFSAAIDSIMGH 711
            P+  EQ +       LP L  W P     + PPP+ +++ ESC ++   G   G   GLL G+FLGAM DM P + +ING+EVPQAPL+EQ R   R T  + +  +RNF   + +  G+EC+VEK R KHDV N V SGCV GAA+ AKQGPQA  +GC G AAFS  ID++MGH
Sbjct:   45 PVPKEQLNPYFNTTRLPYLIPWMPTFNGAQEPPPDFSFMTESCGIKSAIGLFGGAAMGLLMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQARTVMRATGEKCVYWSRNFAFITGVFAGSECLVEKARGKHDVWNQVLSGCVTGAAIQAKQGPQAAALGCGGFAAFSLVIDAVMGH 220          
BLAST of mRNA_P-wetherbeei_contig1044.3.1 vs. uniprot
Match: A0A7S3VGZ9_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGZ9_9STRA)

HSP 1 Score: 154 bits (389), Expect = 4.440e-41
Identity = 83/143 (58.04%), Postives = 98/143 (68.53%), Query Frame = 1
Query:  283 PPNPAWLGESCAVRLVAGTVSGFGAGLLFGMFLGAMGDMQP-IQMINGREVPQAPLREQMRAAYRQTSTRSLSMARNFGTFSALLLGTECVVEKVRAKHDVMNSVYSGCVAGAALAAKQGPQAMCIGCIGVAAFSAAIDSIMG 708
            PP+  WL ESCA +   G + G   GL+ G+FLGAM DM P + +ING+EVPQAPLREQMR   R T  +SL  ARNF   + +  GT+C+VEK R  HDV NSV SGCV GAA+ AKQGPQA  IGC G AAFS  ID +MG
Sbjct:   93 PPDFGWLSESCAGKTAIGVLGGSVCGLVMGVFLGAMSDMTPPVTIINGKEVPQAPLREQMRTTLRATGEKSLYWARNFAFITGVFGGTDCLVEKYRGTHDVWNSVISGCVTGAAMQAKQGPQAAAIGCGGFAAFSLVIDKVMG 235          
BLAST of mRNA_P-wetherbeei_contig1044.3.1 vs. uniprot
Match: A0A7S2AAN4_TRICV (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AAN4_TRICV)

HSP 1 Score: 154 bits (388), Expect = 1.170e-40
Identity = 86/166 (51.81%), Postives = 104/166 (62.65%), Query Frame = 1
Query:  229 RNLPVLRYW-PL---EKTGEPPPPNPAWLGESCAVRLVAGTVSGFGAGLLFGMFLGAMGDMQP-IQMINGREVPQAPLREQMRAAYRQTSTRSLSMARNFGTFSALLLGTECVVEKVRAKHDVMNSVYSGCVAGAALAAKQGPQAMCIGCIGVAAFSAAIDSIMGH 711
            R+LP L  W P+     + E PPP+ +WL ESC  +   G   G   GL  G+FLGAM DM P + +ING+EVPQAPL+EQMR   R T  + +  +RNF   + +  GTEC+VEK R KHDV NS   GCV GAAL AKQGPQA  IGC G A FS  IDS+  H
Sbjct:   95 RSLPYLTPWYPIPGPNASAEGPPPDFSWLSESCGGKAAIGVFGGAVCGLFMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQMRTTVRATGEKCIYWSRNFAFITGVFGGTECLVEKYRGKHDVWNSALGGCVTGAALQAKQGPQAAAIGCGGFAVFSLVIDSVFPH 260          
BLAST of mRNA_P-wetherbeei_contig1044.3.1 vs. uniprot
Match: A0A7S1TYW7_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYW7_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.260e-40
Identity = 77/142 (54.23%), Postives = 96/142 (67.61%), Query Frame = 1
Query:  289 NPAWLGESCAVRLVAGTVSGFGAGLLFGMFLGAMGDMQP-IQMINGREVPQAPLREQMRAAYRQTSTRSLSMARNFGTFSALLLGTECVVEKVRAKHDVMNSVYSGCVAGAALAAKQGPQAMCIGCIGVAAFSAAIDSIMGH 711
            NP W  ESC  R V G+ +G   GL+ G+FLGAMGD+ P I  + G+E PQ PL EQ R AYR T+ RS+  AR+F   +AL  GTECV+EK R +HD  N V SGC AGA ++A  GP A C+GC G AAFSAA +++MGH
Sbjct:   50 NPGWAAESCVGRAVLGSFAGGAMGLVLGVFLGAMGDLNPPIYFVKGKEAPQPPLAEQARTAYRTTAERSIGFARSFFALTALFSGTECVIEKFRGRHDGWNPVLSGCAAGAMMSASGGPTAACMGCAGFAAFSAAAEAVMGH 191          
BLAST of mRNA_P-wetherbeei_contig1044.3.1 vs. uniprot
Match: W7TL11_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL11_9STRA)

HSP 1 Score: 150 bits (379), Expect = 5.580e-40
Identity = 88/163 (53.99%), Postives = 105/163 (64.42%), Query Frame = 1
Query:  235 LPVLRYWPLEKTGEP----PPPNPAWLGESCAVRLVAGTVSGFGAGLLFGMFLGAMGDMQP-IQMINGREVPQAPLREQMRAAYRQTSTRSLSMARNFGTFSALLLGTECVVEKVRAKHDVMNSVYSGCVAGAALAAKQGPQAMCIGCIGVAAFSAAIDSIMG 708
            LP  +Y  L +T        PPNP    E+C  R V G V+G G G++ G+FLGAMGDM P I +INGRE PQAP  EQ+R AYR T  R    ARNF   +AL  G +CVVEK R KHD  N+V SGC  GAAL+AKQGPQA C+GC G AAFS  ++ +MG
Sbjct:   46 LPFYKYVSLPQTPAGMVAVAPPNPQ---ENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMG 205          
BLAST of mRNA_P-wetherbeei_contig1044.3.1 vs. uniprot
Match: A0A7R9WDT6_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WDT6_9STRA)

HSP 1 Score: 149 bits (377), Expect = 3.300e-39
Identity = 87/173 (50.29%), Postives = 108/173 (62.43%), Query Frame = 1
Query:  199 PEQADGRPMLRNLPVLRYW-PL---EKTGEPPPPNPAWLGESCAVRLVAGTVSGFGAGLLFGMFLGAMGDMQP-IQMINGREVPQAPLREQMRAAYRQTSTRSLSMARNFGTFSALLLGTECVVEKVRAKHDVMNSVYSGCVAGAALAAKQGPQAMCIGCIGVAAFSAAIDSI 702
            PE   G    R++PVL  W P+     + E PPP+ +WL ESC  +   G   G   GLL G+FLGAM DM P + +I+G+EVPQAPL+EQ+R   R T  + L  +RNF   + +  GTEC+VEK R KHDV N+   GCV GAAL AKQGPQA  IGC G A FS  IDS+
Sbjct:   74 PEFTLGTLTRRSIPVLTPWYPVPGPNSSMEGPPPDFSWLSESCGGKAAMGVFGGAVCGLLMGVFLGAMSDMTPPVTVIDGKEVPQAPLKEQVRTTLRATGEKCLYWSRNFAFITGVFGGTECLVEKYRGKHDVWNAAIGGCVTGAALQAKQGPQAAAIGCGGFAVFSLVIDSV 246          
BLAST of mRNA_P-wetherbeei_contig1044.3.1 vs. uniprot
Match: K0TBX0_THAOC (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBX0_THAOC)

HSP 1 Score: 148 bits (373), Expect = 1.270e-38
Identity = 84/187 (44.92%), Postives = 108/187 (57.75%), Query Frame = 1
Query:  154 SPPTVILGGGLGPLTPEQADGRPMLRNLPVLRYWPLEKTGEPP-PPNPAWLGESCAVRLVAGTVSGFGAGLLFGMFLGAMGDMQP-IQMINGREVPQAPLREQMRAAYRQTSTRSLSMARNFGTFSALLLGTECVVEKVRAKHDVMNSVYSGCVAGAALAAKQGPQAMCIGCIGVAAFSAAIDSIMG 708
            +P   ++     P   + + G   +R LP  + W          PPN  WL ESC  +   G + G   GL+ G+FLGA+ DM P + +I G+EVPQAPL+EQMR   R T+ +SL   R F   + +  G+EC+VEK R KHDV NSV SGC+ GAA+ AKQGPQA   GC G A FS  IDS MG
Sbjct:   57 TPAGPLVDSSASPHQVDMSRGALTMRGLPYPQPWARANASPAELPPNFDWLSESCGSKAAIGVIGGGAMGLVMGVFLGALTDMTPPVTIIEGKEVPQAPLKEQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNSVVSGCITGAAMQAKQGPQASAAGCGGFAVFSLVIDSFMG 243          
BLAST of mRNA_P-wetherbeei_contig1044.3.1 vs. uniprot
Match: A0A1Z5K7I7_FISSO (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7I7_FISSO)

HSP 1 Score: 148 bits (373), Expect = 2.010e-38
Identity = 80/162 (49.38%), Postives = 104/162 (64.20%), Query Frame = 1
Query:  229 RNLPVLRYWPLEKTGEPPPPNPAWLGESCAVRLVAGTVSGFGAGLLFGMFLGAMGDMQP-IQMINGREVPQAPLREQMRAAYRQTSTRSLSMARNFGTFSALLLGTECVVEKVRAKHDVMNSVYSGCVAGAALAAKQGPQAMCIGCIGVAAFSAAIDSIMGH 711
            R+LP    W    +   PPP+ +WL  SCA ++  G + G G G L G+FLGA+ D  P +Q+I GR+VPQAPLREQMR   R T+ +S   A NF   + +  G+EC+VEK R K+D+ NSV SGC+ GAA+ AK GPQ+  +GC G AAFS  IDS M H
Sbjct:  102 RSLPYPLPWKPVASPTEPPPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFMHH 263          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1044.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C710_9STRA3.700e-6660.77Mitochondrial import inner membrane translocase su... [more]
A0A6H5KF19_9PHAE5.790e-5765.49Mitochondrial import inner membrane translocase su... [more]
A0A7S2P255_9STRA3.840e-4148.30Mitochondrial import inner membrane translocase su... [more]
A0A7S3VGZ9_9STRA4.440e-4158.04Mitochondrial import inner membrane translocase su... [more]
A0A7S2AAN4_TRICV1.170e-4051.81Mitochondrial import inner membrane translocase su... [more]
A0A7S1TYW7_9STRA1.260e-4054.23Mitochondrial import inner membrane translocase su... [more]
W7TL11_9STRA5.580e-4053.99Mitochondrial import inner membrane translocase su... [more]
A0A7R9WDT6_9STRA3.300e-3950.29Mitochondrial import inner membrane translocase su... [more]
K0TBX0_THAOC1.270e-3844.92Mitochondrial import inner membrane translocase su... [more]
A0A1Z5K7I7_FISSO2.010e-3849.38Mitochondrial import inner membrane translocase su... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1044contigP-wetherbeei_contig1044:6092..7999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G569
Preferred nameTIMM22
PFAMsTim17
Model size1173
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K01094,ko:K17790
KEGG TC3.A.8.1
KEGG ReactionR02029
KEGG Pathwayko00564,ko01100,map00564,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042721,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990542
Exons3
Evalue2.53e-60
EggNOG OGsCOG5596@1|root,KOG3225@2759|Eukaryota
Ec32 ortholog descriptionMitochondrial import inner membrane translocase subunit TIM22 homolog
Ec32 orthologEc-14_006420.1
EC3.1.3.27
DescriptionMitochondrial import inner membrane translocase subunit
Cds size588
COG categoryO
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185869.4552882-UTR-P-wetherbeei_contig1044:6091..62171683185869.4552882-UTR-P-wetherbeei_contig1044:6091..6217Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1044 6092..6217 +
1683185869.4961321-UTR-P-wetherbeei_contig1044:7540..79991683185869.4961321-UTR-P-wetherbeei_contig1044:7540..7999Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1044 7541..7999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185869.4689708-CDS-P-wetherbeei_contig1044:6217..64371683185869.4689708-CDS-P-wetherbeei_contig1044:6217..6437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1044 6218..6437 +
1683185869.4783294-CDS-P-wetherbeei_contig1044:6720..69001683185869.4783294-CDS-P-wetherbeei_contig1044:6720..6900Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1044 6721..6900 +
1683185869.4872887-CDS-P-wetherbeei_contig1044:7352..75401683185869.4872887-CDS-P-wetherbeei_contig1044:7352..7540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1044 7353..7540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1044.3.1prot_P-wetherbeei_contig1044.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1044 6218..7540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1044.3.1

>prot_P-wetherbeei_contig1044.3.1 ID=prot_P-wetherbeei_contig1044.3.1|Name=mRNA_P-wetherbeei_contig1044.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=196bp
MAKDIGDDDSPPTVILGGGLGPLTPEQADGRPMLRNLPVLRYWPLEKTGE
PPPPNPAWLGESCAVRLVAGTVSGFGAGLLFGMFLGAMGDMQPIQMINGR
EVPQAPLREQMRAAYRQTSTRSLSMARNFGTFSALLLGTECVVEKVRAKH
DVMNSVYSGCVAGAALAAKQGPQAMCIGCIGVAAFSAAIDSIMGH*
back to top

mRNA from alignment at P-wetherbeei_contig1044:6092..7999+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1044.3.1 ID=mRNA_P-wetherbeei_contig1044.3.1|Name=mRNA_P-wetherbeei_contig1044.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1908bp|location=Sequence derived from alignment at P-wetherbeei_contig1044:6092..7999+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGTGGTAAGATCGGCCACAAAACTGCTTTCCCTGGGGATACCAAGCTT CTCACACACCAGTCGAGCTGCAAGATCATCCTGAGCCTCGTTAGACGTGT GCTCTCGCCGGCAGCCATCCCAACACATGGCGAAGGACATCGGAGACGAT GACTCTCCTCCTACGGTAATACTGGGTGGCGGCTTGGGGCCGCTGACGCC GGAGCAGGCCGATGGGCGTCCGATGCTTCGAAACCTGCCCGTCTTAAGAT ATTGGCCTCTCGAAAAGACTGGAGAGCCGCCACCGCCAAACCCAGCGTGG TTGGGCGAAAGCTGCGCCGTGCGTCTGGTTGCCGGGACCGTTTCAGGTAC GGAAAGAGGGCAAAGTAGCTGCGCGGTTCTTGCTGTAAGGGCTTTGCATG GCCCTTCTCCTGCCTCCTGCGAAGTCCATATTTGGGATTGGAAGCAATTG CGCAAATGCGTTCCTCATTATGCAAAGGAAGGGAATAGAAGAAGGCTCTC TTGAGCTTCATAAGTTGGAATTTGATTGCAAAGACTTGCAAAGACTTGCA AAGAACCAGTTCTAATCTAGCTGACCACCTCTCCCTTTGCACCTGATCCT GCCCTGCTTCCTTGCCCCGCAACCTCCAGGCTTCGGCGCCGGCCTCCTGT TCGGCATGTTCCTCGGCGCGATGGGCGACATGCAGCCCATTCAGATGATT AACGGCCGCGAGGTGCCGCAGGCGCCATTGCGGGAACAGATGCGCGCGGC ATACCGTCAGACATCGACGCGGTCCCTCAGCATGGCTCGCAACTTTGGAA CTTTTTCAGGTCAGTTTATTTTCTTGGGGCCGTCACCGACCGCATCGCCG AACTTGGTCCCCTCACAATGAGACGTGTGTCTGTTGCTGAACCTTTTAGT AAGTTCAGTTGTTGGGATAAAAGCTCCATCCTTGCTAAATCAGATGAAAG CGATTGCTGCTCCTCCTTTACTTGGAGGATTGGAACGGAGTTCTCCAGAC TTCAAGACTTAGGTCCGGCCTGCTAGTGTTTTTCAGCGAGGTGCAATGGG GCGTCTTTGGCGACGACAGAGATGGTGCACAAACCGCCTTGCCATGTCCT TTTGTGAACACCCCAACCGATGCTTTTCCTGCATTATCCCAACCCGTCTC TTCTCCATCCCTTCATCTTCGCCCCGCTCTGCGCTCAAATAAAACGGGAA ATCATCGCCGCTGCTGTCACCTCCGATTCAACAAACACCGCAACGCGAAC GGACGGCGCAGCGCTGCTGCTGGGCACGGAGTGCGTGGTGGAGAAGGTGC GGGCGAAACACGACGTGATGAACAGCGTCTATAGCGGCTGTGTGGCGGGC GCCGCCCTCGCCGCCAAGCAGGGCCCGCAGGCCATGTGCATTGGCTGCAT CGGCGTCGCCGCCTTTTCCGCCGCCATCGACTCCATCATGGGCCACTAGG GGGCGACGGAGCCGGCGGTACTGGTTCGAGCTGCTGCGTCAGTCCATCGA ACTGTGATTCGATCGGGCGGCGATCGATGGAAATGCAACAGTGGAAATTC TTCGATTGACCTGTGGCCACGGCGGGCTGCGCTGCGCCGATTGACTGCCG GCGGCCGCTTGGCGGGTTTTTGGAGCATCACCGAGGCGCCGGTGCTCGAT GAACCGGCGAATGGCGACTCCGGCTGTTCCGGCAGTCCTGGCGTGACTCT GGCGACAAGTGCCGCTGCGTTGTCACCGTGGGTGGAGCTAGTACGTGTCG CTGTCTTTATTGGGTCGGCGAGTGCATAACCTCAGCCTGCTGCAGCGGCA CGGTGGGCGGGGCTGGCTTGGCGCTCGCCCGCCGCGCGACGTGCCATGTA TCCGAGGAGGTAAAACCGTGGGGAGAATCGACCTATTAAAATACACCATC ACACAATT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1044:6092..7999+

>mRNA_P-wetherbeei_contig1044.3.1 ID=mRNA_P-wetherbeei_contig1044.3.1|Name=mRNA_P-wetherbeei_contig1044.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=588bp|location=Sequence derived from alignment at P-wetherbeei_contig1044:6092..7999+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAGGACATCGGAGACGATGACTCTCCTCCTACGGTAATACTGGG
TGGCGGCTTGGGGCCGCTGACGCCGGAGCAGGCCGATGGGCGTCCGATGC
TTCGAAACCTGCCCGTCTTAAGATATTGGCCTCTCGAAAAGACTGGAGAG
CCGCCACCGCCAAACCCAGCGTGGTTGGGCGAAAGCTGCGCCGTGCGTCT
GGTTGCCGGGACCGTTTCAGGCTTCGGCGCCGGCCTCCTGTTCGGCATGT
TCCTCGGCGCGATGGGCGACATGCAGCCCATTCAGATGATTAACGGCCGC
GAGGTGCCGCAGGCGCCATTGCGGGAACAGATGCGCGCGGCATACCGTCA
GACATCGACGCGGTCCCTCAGCATGGCTCGCAACTTTGGAACTTTTTCAG
CGCTGCTGCTGGGCACGGAGTGCGTGGTGGAGAAGGTGCGGGCGAAACAC
GACGTGATGAACAGCGTCTATAGCGGCTGTGTGGCGGGCGCCGCCCTCGC
CGCCAAGCAGGGCCCGCAGGCCATGTGCATTGGCTGCATCGGCGTCGCCG
CCTTTTCCGCCGCCATCGACTCCATCATGGGCCACTAG
back to top