mRNA_P-wetherbeei_contig10432.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10432.1.1
Unique NamemRNA_P-wetherbeei_contig10432.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10432.1.1 vs. uniprot
Match: A0A015M465_RHIIW (DUF659 domain-containing protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015M465_RHIIW)

HSP 1 Score: 72.8 bits (177), Expect = 6.530e-10
Identity = 55/182 (30.22%), Postives = 87/182 (47.80%), Query Frame = 1 
Query:  232 QAIDKISSEKIAAICTDRAAAMAKGRRYLVSQPKYRHILDLRCQMHAFNLLYSSFFRHPVPKSIMRTVQQMVMFVRTSHEVGELVRQKARELSKKSRALKTSNKTRFTFGEASLSSIAELEDVLQNDYGDASALFQHKPERVAILSDRWRDFWRQLRKFLKLLLPISKVITMVQSDECTLAD 777
            + I+KI  ++I+AI  D AA + K R   +   KY  I  +RC  H  NL+      H     ++R V  +  F RTSH  G  +R+   E   K   LK+   TR+T    S++S+  L+ VL+    +   L  +   ++ I   + R+F+  L     +L P+ K I  ++S   TLAD
Sbjct:  216 EVIEKIGPDRISAIVLDNAANIKKAR--AIINEKYPKIESVRCISHCINLIACDIVSHNSADRLLRRVNILTTFFRTSHMAGGKLRKLIEESGIKGGGLKSYCVTRWTTSSESVNSVLNLKPVLEKMANEYENLLTNHRIKLII---QGRNFFSDLEILAFVLNPLRKAILSLESRSATLAD 392
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BLAST of mRNA_P-wetherbeei_contig10432.1.1 vs. uniprot
Match: A0A397GL20_9GLOM (Uncharacterized protein n=6 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GL20_9GLOM)

HSP 1 Score: 67.4 bits (163), Expect = 3.350e-8
Identity = 59/189 (31.22%), Postives = 90/189 (47.62%), Query Frame = 1 
Query:  238 IDKISSEKIAAICTDRAAAMAKGRRYLVSQPKYRHILDLRCQMHAFNLLYSSFFRHPVPKSIMRTVQQMVMFVRTSHEVGELVRQKARELSKKSRALKTSNKTRFTFGEASLSSIAELEDVLQNDYGDASALFQHKPERVAILSDRWRDFWRQLRKFLKLLLPISKVITMVQSDECTLADITRFWLYLA 804
            I+KI SEK AA+ TD AA     R  +  Q  Y HI ++RC  HAFNL+ S   +    K  +    ++  F   S++    ++Q   E+  KS  LKT  KTR+    ++ +SI + + V      + S +  +  E + IL D   +F+   R    +  PI + I  V+S    LAD   F + LA
Sbjct:  231 IEKIGSEKFAAVVTDAAANCRVAREKI--QFSYPHIWNIRCIAHAFNLIASDLVKLDAIKEFITKCNKLCHFFHDSNKSNAYLKQGLAEMKIKSEGLKTWIKTRWGSLYSTTNSILKAQPVFDWILSEHSEIITNL-EIIRILKDE--EFFSTCRFIRHIWEPIKESINRVESKSVDLADCFIFLIKLA 414
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BLAST of mRNA_P-wetherbeei_contig10432.1.1 vs. uniprot
Match: A0A8K0GD18_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0GD18_9COLE)

HSP 1 Score: 58.2 bits (139), Expect = 3.490e-5
Identity = 49/206 (23.79%), Postives = 96/206 (46.60%), Query Frame = 1 
Query:  247 ISSEKIAAICTDRAAAMAKGRRYLVSQPKYRHILDLRCQMHAFNLLYSSFFRHPVPKSIMRTVQQMVMFVRTSHEVGELVRQKARELSKKSRA-LKTSNKTRFTFGEASLSSIAELEDVLQ-----NDYGDASALFQHKPERVAILSDRWRDFWRQLRKFLKLLLPISKVITMVQSDECTLADITRFWLYLAKDLVDVMAASELTA 846
            I   K+ A CTD AA M +    L  + + + I    C  H  NLL +   +      ++ + + ++  +++   +        RE  +  +  LK +  TR+     S  S+ + +++L+     ++Y D       K  +  IL D    FW+++  FLK+L P+ K IT+++SDEC + ++T   + + K     +  S+L++
Sbjct: 2274 IGINKVIACCTDNAANMKRAWDLLREEYRDKPISFYGCAAHTLNLLVNDITKLNTTDILINSAKAIIKVIKSKSVLTSAFFNLQREKQEPRKCVLKLAVATRWASTVLSFESLLKNKNILKALAINDEYQDLI----EKRNKTNILDDD--IFWKRIESFLKILQPLKKWITVLESDECRINEVTEALIEIEKVFKKELPLSDLSS 2473
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BLAST of mRNA_P-wetherbeei_contig10432.1.1 vs. uniprot
Match: A0A8K0DD11_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DD11_9COLE)

HSP 1 Score: 56.6 bits (135), Expect = 6.430e-5
Identity = 49/206 (23.79%), Postives = 95/206 (46.12%), Query Frame = 1 
Query:  247 ISSEKIAAICTDRAAAMAKGRRYLVSQPKYRHILDLRCQMHAFNLLYSSFFRHPVPKSIMRTVQQMVMFVRTSHEVGELVRQKARELSKKSRA-LKTSNKTRFTFGEASLSSIAELEDVLQ-----NDYGDASALFQHKPERVAILSDRWRDFWRQLRKFLKLLLPISKVITMVQSDECTLADITRFWLYLAKDLVDVMAASELTA 846
            I   K+ A CTD AA M K    L  +   + I    C  H  NLL +   +      ++ + + ++  +++   +        RE  +  +  LK    TR+     S  S+ + +++L+     ++Y D       K  +  IL D    FW++++ FLK++ P+ K IT+++SDEC + ++T   + + K     +  S+L++
Sbjct:   43 IGINKVVACCTDNAANMKKAWDLLREKYADKPISFYGCAAHTLNLLVNDITKLNTTDILINSAKPIIKVIKSKSVLTSAFFNLQREKQEPRKCVLKLPVATRWASIVLSFESLLKNKNILKALAINDEYQDLI----EKRNKTNILDDD--IFWKRIKSFLKIIQPLKKWITVLESDECRINEVTEALIEIEKVFKKELPLSDLSS 242
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10432.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A015M465_RHIIW6.530e-1030.22DUF659 domain-containing protein n=2 Tax=Rhizophag... [more]
A0A397GL20_9GLOM3.350e-831.22Uncharacterized protein n=6 Tax=Diversispora epiga... [more]
A0A8K0GD18_9COLE3.490e-523.79Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A8K0DD11_9COLE6.430e-523.79Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10432contigP-wetherbeei_contig10432:391..2255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6087.XP_004207781.1
PFAMsDUF659,Dimer_Tnp_hAT
Model size1423
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.62e-06
EggNOG OGs2CU6P@1|root,2RJJK@2759|Eukaryota,3A09E@33154|Opisthokonta,3BPSP@33208|Metazoa
DescriptionProtein of unknown function (DUF 659)
Cds size936
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185869.0695767-UTR-P-wetherbeei_contig10432:390..5831683185869.0695767-UTR-P-wetherbeei_contig10432:390..583Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10432 391..583 -
1683185869.0937676-UTR-P-wetherbeei_contig10432:1699..17591683185869.0937676-UTR-P-wetherbeei_contig10432:1699..1759Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10432 1700..1759 -
1683185869.1101768-UTR-P-wetherbeei_contig10432:2021..22551683185869.1101768-UTR-P-wetherbeei_contig10432:2021..2255Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10432 2022..2255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185869.0787704-CDS-P-wetherbeei_contig10432:583..8171683185869.0787704-CDS-P-wetherbeei_contig10432:583..817Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10432 584..817 -
1683185869.0860848-CDS-P-wetherbeei_contig10432:997..16991683185869.0860848-CDS-P-wetherbeei_contig10432:997..1699Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10432 998..1699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10432.1.1prot_P-wetherbeei_contig10432.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10432 584..1699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10432.1.1

>prot_P-wetherbeei_contig10432.1.1 ID=prot_P-wetherbeei_contig10432.1.1|Name=mRNA_P-wetherbeei_contig10432.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=312bp
MAKGRRYLVSQPKYRHILDLRCQMHAFNLLYSSFFRHPVPKSIMRTVQQM
VMFVRTSHEVGELVRQKARELSKKSRALKTSNKTRFTFGEASLSSIAELE
DVLQNDYGDASALFQHKPERVAILSDRWRDFWRQLRKFLKLLLPISKVIT
MVQSDECTLADITRFWLYLAKDLVDVMAASELTAEYISHAAAQYIRRVQA
LHLDLHRLALFRDPTHKLVGAGGGDETKFEATTDAARGASPFEAAEGPDG
DPDADVLGEEDLAELFTVFDACIVHADDEVEQADQPSVEGMVGLREDNGI
DVNHAALAPDF*
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mRNA from alignment at P-wetherbeei_contig10432:391..2255-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10432.1.1 ID=mRNA_P-wetherbeei_contig10432.1.1|Name=mRNA_P-wetherbeei_contig10432.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1865bp|location=Sequence derived from alignment at P-wetherbeei_contig10432:391..2255- (Phaeothamnion wetherbeei SAG_119_79)
GGAGTTCAGCACTGCGGGAGAACTACCTCATGAAGAAGTGGATGCGTGTG
ACTCGGGCCACGCATGCCGCCTTGCAGAGTGCGAGAGCGTGCGTCACTAT
CATGCTTGATGGCTAGACGGACCGCCAGGGCAAATCTGTTGTCGCCGTGC
TCGCCGTGACTGCACAGCGCAAGACCCACCTGCTGGATGTGATGGATTGC
TCTTCCGACAGCCATACCGCTGCCTACAACACAGGCAAAATGTCAAGAAG
CACTCCTCACGAACGAGGCGCGGCACGTACCTTTTGCTTCTGTATTTCGG
GGCTCGCACACACATTTGCCTCTTGGGTTGCCTCTTGGGCTGATGAGGTG
GTTAGCAGCACGTCAGGAGGCAGCACTGTTTTTCCCTTTGATACTCCCTT
CCCCTCCCTTCTTTGCGAAACGCGCCTTACTTGAGCGCGCTGCTCATGCA
CTCGTCCTTTGCTGCCTGCAGCTATTTTGCAGAGCTTTTCGCTAAGGCGA
TTGACAAGATTAGCTCGGAAAAGATTGCAGCCATCTGCACTGACCGCGCA
GCAGCCATGGCTAAGGGCCGCCGGTATCTGGTGTCGCAGCCCAAGTACCG
CCACATCCTGGATCTCCGCTGCCAGATGCACGCCTTCAACCTGCTGTACA
GCTCATTCTTCAGGCATCCCGTCCCCAAGAGCATTATGCGGACCGTCCAG
CAGATGGTCATGTTTGTGCGTACCTCGCACGAGGTCGGCGAGCTCGTGCG
CCAGAAGGCGAGGGAGTTGAGCAAAAAGTCGCGTGCCCTCAAGACATCCA
ATAAGACACGATTCACCTTCGGTGAGGCGAGCCTTTCTTCCATTGCAGAA
CTCGAAGACGTGCTGCAGAACGACTATGGGGATGCGTCTGCTCTCTTCCA
GCACAAGCCGGAGCGCGTCGCTATACTCTCCGACCGCTGGCGTGACTTTT
GGCGTCAGCTCCGTAAGTTTCTCAAGCTACTGCTGCCCATCAGCAAGGTC
ATCACGATGGTGCAGTCCGATGAGTGCACGCTCGCCGACATCACGCGCTT
CTGGCTCTATCTCGCCAAGGACCTGGTGGACGTTATGGCTGCATCCGAGC
TTACTGCTGAGTACATTTCGCATGCGGCGGCTCAGTACATTCGGCGTGTG
CAGGCCCTCCACCTGGATCTGCACCGGCTAGCGCTCTTCCGGGATCCAAC
TCACAAGCTGGTCGGCGCGGGTGGCGGCGATGAGACCAAGTTCGAGGCCA
CTACTGATGTGATGAGCAAGCTTGTATCTTCCCCTCTCCTCGTCCTCTTT
GATGTTTTGCCAAAATCGATTATTTTCCATGTTTTGTGTTTCACTTCTCT
CTGACAGATGCCAATCTGCACTTTCCTCGCTTGTCATGTCTGCTGCGTCC
CTGCCTGTTGCTCTTTTCTTGCTGCTCTTGCTTTGCAGGCTGCGAGAGGC
GCAAGTCCGTTCGAGGCGGCAGAGGGCCCGGATGGCGATCCCGACGCTGA
TGTTTTGGGTGAGGAGGACTTGGCGGAGCTTTTCACCGTCTTTGATGCAT
GCATCGTTCATGCAGACGACGAGGTCGAGCAGGCTGATCAGCCAAGCGTG
GAGGGCATGGTCGGGCTCCGGGAGGATAATGGCATTGACGTCAACCATGC
AGCCCTCGCGCCCGACTTCTAGACCCCCGCCGCGCACCCAGTCGCCATCC
TTGGCGAAGCTGCGGAGTTTGACGCCAACCTGAGCGAACGTTGGCGACCT
CGTGGTTCCTCGGCTGCTCGCACCGAGTGCGCTGCAGCCGCACTGTCACC
TGGTGGTGGGGAAGGTGCGGCGTCCTCCTGAGGCCGTGAATGGAGTCACG
GCAGCGTTTCAGCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10432:391..2255-

>mRNA_P-wetherbeei_contig10432.1.1 ID=mRNA_P-wetherbeei_contig10432.1.1|Name=mRNA_P-wetherbeei_contig10432.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=936bp|location=Sequence derived from alignment at P-wetherbeei_contig10432:391..2255- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTAAGGGCCGCCGGTATCTGGTGTCGCAGCCCAAGTACCGCCACAT
CCTGGATCTCCGCTGCCAGATGCACGCCTTCAACCTGCTGTACAGCTCAT
TCTTCAGGCATCCCGTCCCCAAGAGCATTATGCGGACCGTCCAGCAGATG
GTCATGTTTGTGCGTACCTCGCACGAGGTCGGCGAGCTCGTGCGCCAGAA
GGCGAGGGAGTTGAGCAAAAAGTCGCGTGCCCTCAAGACATCCAATAAGA
CACGATTCACCTTCGGTGAGGCGAGCCTTTCTTCCATTGCAGAACTCGAA
GACGTGCTGCAGAACGACTATGGGGATGCGTCTGCTCTCTTCCAGCACAA
GCCGGAGCGCGTCGCTATACTCTCCGACCGCTGGCGTGACTTTTGGCGTC
AGCTCCGTAAGTTTCTCAAGCTACTGCTGCCCATCAGCAAGGTCATCACG
ATGGTGCAGTCCGATGAGTGCACGCTCGCCGACATCACGCGCTTCTGGCT
CTATCTCGCCAAGGACCTGGTGGACGTTATGGCTGCATCCGAGCTTACTG
CTGAGTACATTTCGCATGCGGCGGCTCAGTACATTCGGCGTGTGCAGGCC
CTCCACCTGGATCTGCACCGGCTAGCGCTCTTCCGGGATCCAACTCACAA
GCTGGTCGGCGCGGGTGGCGGCGATGAGACCAAGTTCGAGGCCACTACTG
ATGCTGCGAGAGGCGCAAGTCCGTTCGAGGCGGCAGAGGGCCCGGATGGC
GATCCCGACGCTGATGTTTTGGGTGAGGAGGACTTGGCGGAGCTTTTCAC
CGTCTTTGATGCATGCATCGTTCATGCAGACGACGAGGTCGAGCAGGCTG
ATCAGCCAAGCGTGGAGGGCATGGTCGGGCTCCGGGAGGATAATGGCATT
GACGTCAACCATGCAGCCCTCGCGCCCGACTTCTAG
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