mRNA_P-wetherbeei_contig1043.1.6 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1043.1.6
Unique NamemRNA_P-wetherbeei_contig1043.1.6
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI)

HSP 1 Score: 537 bits (1384), Expect = 1.500e-174
Identity = 335/635 (52.76%), Postives = 401/635 (63.15%), Query Frame = 1
Query:    1 MSHDRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRAL----AGNGRG--CQGHDRTFR-ELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGK-EEFLPPKEVELQMKLLWEKEWALLSLVF--GSAWRAGPKQPLG-----------VAAG----GYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAELQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLLSSPGQKVWRHLDDGDIMLVNRQ 1830
            MSHDRTV+RH+VE + FGFL DD+IR +SVK+ITSP TFD LNNPLPGGLYD  LGP +  + CETCGQDQ++CPGH+GHIELAVSVYHP+LF  LYKLLR+KCFSCH LRL+  K RV  V++ML DAG A  A  L   L   L  +D A D +        ++    +  +  L  L    AG  R   C GH+R  R +L ++LIK M +  +CENCG  SP +RKDG +KLFQ PL+ K R  N+    + ++SA+Q   RR+      D      XXXXXXXXXXXX                                 K   +  +F+PP EVELQM+ LW+ E ++L L+F  G   R+ P    G           +A G    GYRLFFVR LAVPPPRFRPPM +G M+AEHPQNV+L++VL LNE L N               A  L G +L   L  W+ELQ  VN +MDSSK+ RG         PGLRQ   VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGT+EIGIPLRFA+ LTYPQPVA WNV  MR LVE G  V+PGAN+VED++GR+  L RL   +R+ +AARLLSSPGQKVWRHL DGD MLVNRQ
Sbjct:    1 MSHDRTVIRHAVEEIGFGFLTDDDIRRLSVKRITSPVTFDTLNNPLPGGLYDPVLGPVDKMMMCETCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKMMLVDAGRAQEALELDATLLGYL--KDGARDHDVLDGNTEDTLVSATKYRDHVLGCLEEDLAGAPRAEWCGGHNRQLRRQLAENLIKAMGACKRCENCGAFSPNIRKDGSNKLFQVPLSDKNRMANQSCNTQ-IVSAVQ---RRDPGKPNEDXXXXXXXXXXXXXXXXXXNLEDDDVGGSAPSSKVVGVSLAAAQAAAGDPATKTGAQAHKFMPPIEVELQMQQLWKLESSVLDLIFVSGRRTRSAPGDVNGPPSFSLQNANDLAGGSISDGYRLFFVRALAVPPPRFRPPMNMGDMIAEHPQNVYLTKVLNLNESLKN---------------AASLKGKDLASVLTTWVELQTTVNCYMDSSKDPRGLKDTP----PGLRQ---VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVWRHLTDGDCMLVNRQ 607          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 528 bits (1359), Expect = 7.220e-166
Identity = 339/643 (52.72%), Postives = 413/643 (64.23%), Query Frame = 1
Query:    1 MSHDRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRAL------AGNGRGCQGHDRTFR-ELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGK---------EEFLPPKEVELQMKLLWEKEWALLSLVFGS------------AWRAGPKQPL-----GVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAELQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLLSSPGQKVWRHLDDGDIMLVNRQ 1830
            MSHDRTV+RH+VE + FGFL DD+IR +SVK+ITSP TFD LNNPLPGGLYD  LGP +  + C TCGQDQ++CPGH+GHIELAVSVYHP+LF  L+KLLR+KCFSCH LRL+  K RV  V++ML DAG A  A  L   L   L  +D A D +        ++    +  ++ L  L      A     C GH+R  R +L ++LIK + +  +CENCG  SP +RKDG +KLFQ PL+ K R  N+    + ++SA+Q   RR       D  +P + XXXXXXXXXXXXXXXXXXXXXXX                      +AG           EF+PP EVELQM+ LW++E + L L+F S              R+   Q +     G  + GYR FF+R+LAVPPPRFRPPM +G ++AEHPQNVHL++VL LNE L N            +DS   L G +L   L  W+ELQ  VN +MDSSK+ RG         PGLRQ   VLEKKEGLFRKHMMGKRVNYACRSVISPDPY+GT+EIGIPLRFA+ LTYPQPVA WNV  MR LVE G  V+PGAN+VED++GR+  L RL   +R+ +AARLLS PGQKVWRHL DGD MLVNRQ
Sbjct:    1 MSHDRTVIRHAVEEIGFGFLTDDDIRKLSVKRITSPVTFDTLNNPLPGGLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALFKLLRAKCFSCHNLRLSKSKTRVAAVKMMLVDAGRAQEALELDATLLGYL--KDGAKDHDVLDGNTEDTLVSATKHRDRVLGCLEEDLADAPRADWCGGHNRQLRRQLAENLIKAIGACKRCENCGAFSPNIRKDGSNKLFQVPLSDKNRMANQTCNTQ-IVSAVQ---RR-------DPGKPNEDXXXXXXXXXXXXXXXXXXXXXXXDDIAGSAPSSKVVGVPLAAAQADAGNPAAKRGAQFHEFMPPIEVELQMQQLWKQECSTLDLIFVSDRRTRTVPGDVSGARSSSSQNVDGLHRGGISDGYRFFFMRVLAVPPPRFRPPMNMGDLIAEHPQNVHLTKVLNLNESLKN------------ADS---LKGDDLASVLTTWVELQTTVNCYMDSSKDPRGLKETP----PGLRQ---VLEKKEGLFRKHMMGKRVNYACRSVISPDPYLGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSIPGQKVWRHLKDGDCMLVNRQ 608          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 464 bits (1194), Expect = 1.610e-143
Identity = 299/620 (48.23%), Postives = 380/620 (61.29%), Query Frame = 1
Query:    1 MSHDRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSV----EPVLRTHEKRLRALAGNGRGCQGHDRTFRELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWR-----AGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAELQRALGLWIELQDAVNVFMDSSKERR-GAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLLSSPGQKVWRHLDDGDIMLVNRQ 1830
            MSHDR V+RH VE V FGFL  DEIR++SVKQITSP TFDALNNPLPGGLYD ALGP++    C TCGQD   CPGH+GHIELA  VYHP+LFPIL+KLL++KCFSCH+LR+ +   R+  V++ LCDAG+   AR+L               D E AG G   +     E +L    + + A+              R++ DD+IK + +  KC+NCG  SP +RKDGH+KLF +PL+ K +  N       +++A      + +    A  ++P     XXXXXXXXXXXXXXXXXXXXXXXXXX                     ++++ P E + QM+LLWEKE  LLSL+F ++       + P+   G    G+RLFF++ +AVPPPRFRPPM +  MVAEHPQN +L++                                             + +N F+DSSK+    A  A+    PGLRQ   +LEKKEGLFRKHMMGKRVN++CRSVISPDPY+GT+EIGIP RFA+VL +PQPVA WNV  +R LVE GA+ +PGANY+EDAAG+L +L R    +R+ +AARLLS PGQKVWRHL D D MLVNRQ
Sbjct:    1 MSHDRQVIRHKVEEVKFGFLSGDEIRAISVKQITSPLTFDALNNPLPGGLYDPALGPSQQRAVCPTCGQDHLSCPGHVGHIELAAEVYHPLLFPILFKLLKTKCFSCHKLRMNSQTCRIYAVKMALCDAGETNMARSL---------------DAEIAGGGAEANTDEGDEDLLPDKAETISAILAR-----------RQIADDVIKAIGACKKCQNCGAFSPVLRKDGHTKLFLKPLSDKMQKANN------LVAAKMGSAMQAIKDKAAAANQPGNDSDXXXXXXXXXXXXXXXXXXXXXXXXXXDEH------------------DQYVSPLEAQAQMQLLWEKEGHLLSLLFKTSMPPPKLLSAPQPVAGYDPQGFRLFFMKTIAVPPPRFRPPMVMADMVAEHPQNQYLTK---------------------------------------------NQINCFIDSSKDTSVNAKDAA----PGLRQ---ILEKKEGLFRKHMMGKRVNHSCRSVISPDPYIGTTEIGIPERFAKVLCFPQPVAAWNVEHLRTLVENGADFYPGANYIEDAAGKLINLRRQSAVQRKGMAARLLSEPGQKVWRHLQDRDAMLVNRQ 518          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A421EWZ9_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EWZ9_9STRA)

HSP 1 Score: 404 bits (1039), Expect = 1.080e-120
Identity = 257/636 (40.41%), Postives = 350/636 (55.03%), Query Frame = 1
Query:   10 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDRTFR-----------ELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNG----VGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAE----LQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLL----SSPG------QKVWRHLDDGDIMLVNRQ 1830
            D+T++RH V  V FGF  D EIR +SVKQ+TS  +FD+LNNP+ GGLYD ALGP +  + C TC Q Q+ CPGHLGHIEL V VY+P+LF +L  LL+ KCF+CH+ R+A+  +RV  V+++L D G    A  L + L      ED+          R    +  +    +RL AL+ +     G  R  R           +L  + +K + +  KCENCG  SP VR+D  +K+F + L+ + R  NR      V SA+ T+     +G    V  DDSE E                                                  + +FLPP E++ Q++L+W+ E  L+ L +G        +  G    G+R FF+  + V P RFRPP+ +G    EH QN HLS+++AL+E ++  +  ++Q G + SD     A  E    L R L LW ELQ +VN+ +DSSK + G   A  I+Q        V+EKKEGLFRKHMMGKRVNYA RSVISPDPY+ TS+IG+PLRFA+ LTYPQPV PWNV  MR LV  G +VHPGAN+VE   GRL DL +    +R+A++  LL    S+ G      ++VWRHL  GD++L+NRQ
Sbjct:  485 DQTILRHEVAEVAFGFYSDAEIRELSVKQLTSRLSFDSLNNPVVGGLYDPALGPVDFNMICPTCHQTQKECPGHLGHIELPVPVYNPVLFNVLLTLLKRKCFTCHKFRVASASSRVIRVKILLLDNGFTDEAAQLGELLEQRNGVEDEPPQ-------RTFQRQQAILDEYERL-ALSKSNSSTYGKTRLLRPLHRSAEVQREKLATEFLKNVKN--KCENCGAISPAVRQDASAKIFLKALSARSRKVNRSKN-LTVTSALDTIRGNVSDGDDEPVNGDDSESEMEDDEDKYATTED----------------------------------STSRSKFLPPLEIQSQLQLMWQNEDGLMELFYGDR-NIASGRTTGRKPDGWRKFFLNAIPVAPSRFRPPVFMGDKQFEHAQNSHLSKIMALSESIVQGDYYKRQ-GVTNSDGDDSDAEKEEKVNLSRKLALWTELQTSVNLLVDSSKAKPGTDVAQGIKQ--------VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRRLVINGPDVHPGANFVESETGRLIDLSKRSPHQREAISKTLLTRSASAQGTSKNRVKRVWRHLKTGDVVLMNRQ 1065          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A484E7B9_BRELC (DNA-directed RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7B9_BRELC)

HSP 1 Score: 403 bits (1035), Expect = 1.180e-120
Identity = 249/630 (39.52%), Postives = 352/630 (55.87%), Query Frame = 1
Query:   10 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDR-------------TFRELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAELQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLLSSPG----------QKVWRHLDDGDIMLVNRQ 1830
            D+T++RH V  V FGF  DDEIR +SVKQI+S  +FDALNNP+ GGLYD +LGP +  V C TC Q Q+ CPGHLGHIEL V VY+P+LF  +  LL+ KCF+CH+ R A  ++RV  V+++L D G    A  L + L      ED+ +         I   + +L  +E+    LA + R C  + +             T  +L  D +K++ +  KCENCG  SP VR+D H+K+F + L+ + R  NR    + V SA+ T+ R  ++    D +                                                   + + +FLPP EV+ Q++L+W+ E  L+ L++G    A  +  L +   G+  FF+ ++ V P RFRPP+ +G    EH QN HLS++++  + ++ TE  ++       + A      +L R L LWIELQ+AVN+ +DSSK + G   A  I+Q        V+EKKEGLFRKHMMGKRVNYA RSVISPDPY+ TS+IG+PLRFA+ LTYPQPV PWNV  MR LV  G ++HPGAN+VE  +GRL DL +    +R+A++  LL+             ++VWRHL  GD++L+NRQ
Sbjct:    6 DQTILRHEVAEVAFGFYSDDEIRDLSVKQISSRLSFDALNNPVLGGLYDPSLGPVDYNVICPTCRQTQKECPGHLGHIELPVPVYNPVLFSQMLTLLKRKCFTCHKFRQAGARSRVLRVKILLLDNGYVNEAAQLGELLEQRNGIEDEPSQ------RTIQRQQAILDEYER----LALSRRSCSNNGKINLLCPLPRFAEVTREKLTTDFLKSIKN--KCENCGAISPAVRQDAHAKIFLKGLSARSRKVNRSKN-QAVTSALDTI-RGSVSDYNDDLASGNVSYTNDGFVNGDDSDSAMDYDEEAVMEDL-------------------SSQSKFLPPLEVQSQLQLMWKNEDGLMELLYGDRNIANGRI-LDLKPDGWCKFFLNVIPVAPSRFRPPVFMGDKQFEHAQNSHLSKIMSFCDSIVQTENSKRHAATLEENDADNEQQVDLSRKLALWIELQNAVNLMVDSSKAKPGTEVAQGIKQ--------VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDMHPGANFVESESGRLIDLSKRTPHQREAISKTLLTRSASALGTSKNRVKRVWRHLKTGDVVLMNRQ 593          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: K8YRY5_NANGC (DNA-directed RNA polymerase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRY5_NANGC)

HSP 1 Score: 403 bits (1035), Expect = 1.540e-120
Identity = 278/629 (44.20%), Postives = 363/629 (57.71%), Query Frame = 1
Query:   10 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRA-LAGNGR----GCQGHDRTFRE-LVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGR--GTNRGLGGRGVLSAMQTM--WRREL---NGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWR-----AGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVG-GMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAELQRALGLWIELQDAVNVFMDSSKE---RRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLLSSPGQKVWRHLDDGDIMLVNRQ 1830
            +R VVRH V  V FG   ++EI  +SV ++++  T+D L NPLPGGLYD A+GP +    C TC    R CPGH+GH  L++ VY+P+ F I+++ LR KCF CH  RL+ F   V  ++L L DAG A    + AD L+ AL      AD+  +          +LR  E RLR  L   G+       G  +  R  L+ D ++ + S   C+ C      VRKDG++K F     V+GR  G +RG G   + SA+  +   R E+   NG G DDS+ E+  XXXXXXXX                                    EA   E++ P EV++ MKLLWE E  L +L++G A       + P    G  A G++  F R+L V P RFRPP     G +AEHPQN ++ +++ L+ER+    R+    GG G+     L    L R L  WI+LQ+AVN ++DSSK+   R G G  +    PG+RQ    LEKKEGLFR HMMGKRVN+ACRSVISPDPY+GTSEIG+PLRFA+VLTY QPV P+N A++R  VE GAE HPGANYVEDA GRL DL R+   RR+ALAARLL+ PGQ VWRHL DGD++L+NRQ
Sbjct:   11 ERCVVRHDVSEVQFGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLA----HEADSLDQALFR----ADLHRS---------TILRDTEMRLRRHLQTAGQVPKSWIPGETKIKRRALIKDFLQEVLSCKTCDRCSAPKTTVRKDGYTKFF-----VRGRRAGHSRGAGAH-IPSALAVVRNGRHEVECGNGFG-DDSDGEESEXXXXXXXXASQERFAARGGDT-----------------------EAEGGEYMAPAEVQMHMKLLWEAEPELATLIWGKAAVEKSVFSAPGADTG-RADGWKTLFWRVLPVTPSRFRPPSKNDDGSLAEHPQNYNVIKIMNLDERIRALLRKED--GGEGATGPENLPAEALSRVLSTWIDLQNAVNGYIDSSKDANARLGGGNLT----PGIRQG---LEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPGQTVWRHLQDGDMVLMNRQ 582          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: H3H1S7_PHYRM (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3H1S7_PHYRM)

HSP 1 Score: 400 bits (1027), Expect = 1.340e-119
Identity = 255/634 (40.22%), Postives = 354/634 (55.84%), Query Frame = 1
Query:   10 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDRTFR-----------ELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNG----VGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDS--AGLLAGAELQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLL----SSPG------QKVWRHLDDGDIMLVNRQ 1830
            D+T++RH V  V FGF  D EIR +SVKQ+TS  +FD+LNNP+ GGLYD A+GP +  + C TC Q Q+ CPGHLGHIEL V VY P+LF  ++ LL+ KCF+CH+ R+A+ ++RV  V+++L D G    A  L + L      ED+          R    +  +    +RL AL+ +     G  +  R           +L  + +K M +  KCENCG  SP +R+D ++K+F + L+ + R  NR      V SA+ T+     +G    +  DDSE E                                                + + +FLPP EV+ Q++L+W+ E  L+ L++G    A  +   G    G+R FF+ ++ V P RFRPP+ +G    EH QN HLS+++ L E ++  +  ++Q G + SD   A   A   L R L LW ELQ+AVN+ +DSSK + G   A  I+Q        V+EKKEGLFRKHMMGKRVNYA RSVISPDPY+ TS+IG+PLRFA+ LTYPQPV PWNV  MR LV  G +VHPGAN+VE   GRL DL +    +R+A++  LL    S+ G      ++VWRHL  GD++L+NRQ
Sbjct:    6 DQTILRHEVAEVAFGFYSDAEIRDLSVKQLTSRLSFDSLNNPVMGGLYDPAMGPVDFNMICPTCHQTQKECPGHLGHIELPVPVYSPVLFGQMFNLLKRKCFTCHKFRVASARSRVVRVKILLLDNGFENEAAQLTELLEQRNGVEDEPPQ-------RTLQRQQAILDEYERL-ALSKSLSSTNGKTQLLRPLPRLAEVEREKLATEFLKGMKN--KCENCGAISPALRQDANAKIFLKGLSARARKVNRSKN-LTVTSALDTIRGNVSDGEADPMNGDDSESEMEDDEDKYAMTED----------------------------------SSSRSKFLPPLEVQSQLQLMWQNEDGLMELLYGDRHIASGRIS-GRKPDGWRKFFLNVVPVAPSRFRPPVFMGDKQFEHAQNSHLSKIMTLAESIVQGDYYKRQ-GATTSDEEDAEKEAQVNLSRKLALWTELQNAVNLLVDSSKAKPGTDVAQGIKQ--------VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFVESENGRLIDLSKRSPHQREAISKTLLTRSASAQGTSKNRVKRVWRHLKTGDVVLMNRQ 584          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A2D4BVH8_PYTIN (DNA-directed RNA polymerase subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVH8_PYTIN)

HSP 1 Score: 399 bits (1025), Expect = 2.670e-119
Identity = 259/645 (40.16%), Postives = 353/645 (54.73%), Query Frame = 1
Query:   10 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDRTF-------------RELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWR----RELNGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQR---GGSGSDSAGLLAGAE--------LQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLL----SSPG------QKVWRHLDDGDIMLVNRQ 1830
            D+T++R+ V  V FGF  DDEIR +SVKQITS  ++D LNNP+ GGLYD ALGP +M V C TC Q Q+ CPGHLGHIEL V VY+P+LF  +  +L+ KCF+CH+ R A+ ++RV  V+++L D G    A  L++ L      ED                EP  RT + R +A+          D+T               +LV + +K M   AKCENCG  SP +R+D  +K+F +PL+ + R  NR      + SA+ T+      RE      DDSE +                                                    +FLP  EV+ Q++++W  E  L+ L++G+   A  +   G  A G++ FF+ ++ V P RFRPP+ + G + EH QN  L ++LA++E ++ T+ Q+QQR       SDS G     +        L R L LW ELQ A+N  +DS+K R G         PG++Q   V+EKKEGLFRKHMMGKRVNYA RSVISPDPY+ TS+IG+PLRFA+ LTYPQPV PWNV  MR LV  G +VHPGAN+VE   GRL DL +    +R+A++  LL    S+ G      ++VWRHL  GD++L+NRQ
Sbjct:    6 DQTILRYEVREVAFGFYSDDEIRDLSVKQITSRVSYDTLNNPVIGGLYDPALGPVDMNVLCPTCHQTQKECPGHLGHIELPVPVYNPVLFAQMLNILKRKCFTCHKFRTASARSRVLRVKILLLDNGFHEEAATLSELLEQRNGVED----------------EPPARTFQ-RQQAILDEYERLALRDKTALLAPLPRVVEVQRNKLVAEFLKGMK--AKCENCGAISPGLRQDASAKIFLKPLSARSRKVNRQKN-LTISSALDTIHGNISDREDGNDSGDDSESDMEDAGFAQAED------------------------------------STSGSKFLPTLEVQSQLQMMWRAEDGLMELLYGNRHIANGRVR-GAKAEGWKKFFLNVVPVAPSRFRPPVFMAGQMFEHAQNTALGKILAVSESIVQTDYQQQQRLQLSNKKSDSDGDETNEDEDAAPTINLARKLALWTELQTAINGLVDSTKVRDGP--------PGIKQ---VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFVESETGRLIDLSKRTPHQREAISKTLLTRSASAQGSSKNRVKRVWRHLQTGDVVLMNRQ 582          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A8K1FLQ6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLQ6_PYTOL)

HSP 1 Score: 390 bits (1002), Expect = 3.900e-116
Identity = 261/640 (40.78%), Postives = 356/640 (55.62%), Query Frame = 1
Query:   10 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDRTFRELVDDLIKTMASVA-----------------KCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAE------LQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLL----SSPG------QKVWRHLDDGDIMLVNRQ 1830
            D+T++R  V  V FGF  +DEIR++SVKQITS  +FD+LNNP+ GGLYD ALGP +  V C TC Q Q+ CPGHLGHIEL V VY+P+LF  +  LL+ KCF+CH+ R A+ ++RV  V+++L D G    A  L++ L      ED                EP  RT +++   L    R      +  ++  +D +K +  VA                 KCENCG  SP +R+D  +K+F +PL+ + R  NR      V SA+ T     +NG  +D  + E                            XXXXXXXX                +FLPP EV+ Q++++W  E  L+ L++G        +  G    G++ FF+ ++ V P RFRPP+ +GG + EH QN  LS++L ++E ++ T+  + Q+  S SD       +E      L R L LW ELQ AVN  +DS+K R G         PG++Q   V+EKKEGLFRKHMMGKRVNYA RSVISPDPY+ TS+IG+PLRFA+ LTYPQPV PWNV  MR LV  G ++HPGANYVE   GRL DL +    +R+A++  LL    S+ G      ++VWRHL  GD++L+NRQ
Sbjct:    6 DQTILRAEVREVAFGFYSNDEIRNLSVKQITSRVSFDSLNNPVIGGLYDPALGPVDYDVLCPTCHQTQKECPGHLGHIELPVPVYNPVLFSQMLNLLKRKCFTCHKFRTASARSRVLRVKILLLDNGFHDEAAMLSELLEQRNGVED----------------EPPARTFQRQQAILDEYERLALSAVKEQKK--NDRLKPLPRVAEVQRNKLCAEFMKGMKNKCENCGAISPGIRQDASAKIFLKPLSARSRKVNRQKN-LTVSSALDT-----INGNVSDHDKDE--------------------------GDXXXXXXXXEDDSKFANAEDSTSGSKFLPPLEVQSQLQMMWRSEDGLMELLYGDR-NVANGRIRGAKPEGWKKFFLSVVPVAPSRFRPPVFMGGQMFEHAQNTALSKILTMSESIVQTDNYKPQKQKS-SDXXXXXXXSEQEVAVNLARKLALWTELQSAVNGLVDSTKVRDGP--------PGIKQ---VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVMNGPDIHPGANYVESETGRLIDLRKRTPHQREAISKTLLTRSASAQGTSKNRVKRVWRHLQTGDVVLMNRQ 582          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A5D6XPF2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPF2_9STRA)

HSP 1 Score: 390 bits (1002), Expect = 4.200e-116
Identity = 255/638 (39.97%), Postives = 354/638 (55.49%), Query Frame = 1
Query:   10 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDRTFREL--VDDLIKTMASV-------AKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNG---VGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNT---ERQRQQRGGSGSDSAGLLAG------AELQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLL----SSPG------QKVWRHLDDGDIMLVNRQ 1830
            D+T++R+ V  V FGF  D EIR +SVKQ+TS  +FDALNNP+ GGLYD ALGP +  + C TC Q Q+ CPGHLGHIEL V VY+P+LF  +  LL+ KCF+CH+ R A+ ++RV  V+L+L D+G    A  LA+ L      ED+               + +L  +E+    LA +  G Q   +  R+L  + ++ +   +        AKCENCG  SP +R+D  +K+F R L+ + R  NR      V SA+ TM    ++G   +G+DDS+                                                  + + +FLPP EV+ Q++L+W+ E  L+ L++G    A  +      A G+R FF+ ++ V P RFRPP+ +G    EH QN +LS++L L+E ++     E+Q+  R G+                  L R L +W ELQ  VN  +DSS+ + GA  A  I+Q        V+EKKEGLFRK+MMGKRVNYA RSVISPDPY+ TS+IG+PLRFA+ LTYPQPV PWNV  MR LV  G +VHPGAN+VE  +GRL DL R    +R+A++  LL    S+ G      ++VWRHL  GDI+L+NRQ
Sbjct:    6 DQTILRYEVAEVAFGFYSDAEIRELSVKQVTSRLSFDALNNPVVGGLYDPALGPVDFHMICPTCHQTQKECPGHLGHIELPVPVYNPVLFGHMLTLLKRKCFTCHKFRSASARSRVLRVKLLLIDSGFDDEAATLAELLEQRNGVEDEPQQQ------TFRRQQAILDEYER----LALSQAGAQQRGQRLRQLARLSEVQREKLAAEFFKGLKAKCENCGAISPGLRQDAKAKIFLRGLSARSRKANRSKN-LTVTSALDTM-HGNVSGDERMGSDDSDDS-------------------------------GSESELEDGKFAASEDTSSRSKFLPPLEVQSQLQLMWKNEDGLMELLYGDRNVASGRA--AAPADGWRKFFLNVIPVAPSRFRPPVFLGDKQFEHAQNSYLSKILTLSENIVQGSYYEQQKLPRAGAEDGXXXXXXXXXTAPQVNLARKLAVWTELQVNVNCLVDSSQAKAGADAAQGIKQ--------VIEKKEGLFRKNMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFVESESGRLIDLKRRSAHQREAISKTLLTRSASAQGTSQHRVKRVWRHLHTGDIVLMNRQ 590          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNY1_ECTSI1.500e-17452.76DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A6H5KJ16_9PHAE7.220e-16652.72DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836C8M0_9STRA1.610e-14348.23DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A421EWZ9_9STRA1.080e-12040.41DNA-directed RNA polymerase subunit n=3 Tax=Phytop... [more]
A0A484E7B9_BRELC1.180e-12039.52DNA-directed RNA polymerase subunit n=1 Tax=Bremia... [more]
K8YRY5_NANGC1.540e-12044.20DNA-directed RNA polymerase subunit n=2 Tax=Monodo... [more]
H3H1S7_PHYRM1.340e-11940.22DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
A0A2D4BVH8_PYTIN2.670e-11940.16DNA-directed RNA polymerase subunit n=1 Tax=Pythiu... [more]
A0A8K1FLQ6_PYTOL3.900e-11640.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XPF2_9STRA4.200e-11639.97DNA-directed RNA polymerase subunit n=1 Tax=Pythiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1043contigP-wetherbeei_contig1043:215..3433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNY1
PFAMsRNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
Model size1830
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02999
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005911,GO:0006139,GO:0006351,GO:0006360,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030054,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055029,GO:0055044,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons6
Evalue2.46e-175
EggNOG OGsCOG0086@1|root,KOG0262@2759|Eukaryota
EC2.7.7.6
Descriptionnegative regulation of protein localization to nucleolus
Cds size1830
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1043.1.6prot_P-wetherbeei_contig1043.1.6Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1043 215..3433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185868.9354572-CDS-P-wetherbeei_contig1043:214..5921683185868.9354572-CDS-P-wetherbeei_contig1043:214..592Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1043 215..592 -
1683185868.944944-CDS-P-wetherbeei_contig1043:898..12521683185868.944944-CDS-P-wetherbeei_contig1043:898..1252Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1043 899..1252 -
1683185868.9520824-CDS-P-wetherbeei_contig1043:1327..14281683185868.9520824-CDS-P-wetherbeei_contig1043:1327..1428Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1043 1328..1428 -
1683185868.959096-CDS-P-wetherbeei_contig1043:1767..21801683185868.959096-CDS-P-wetherbeei_contig1043:1767..2180Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1043 1768..2180 -
1683185868.9662209-CDS-P-wetherbeei_contig1043:2693..31341683185868.9662209-CDS-P-wetherbeei_contig1043:2693..3134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1043 2694..3134 -
1683185868.9737039-CDS-P-wetherbeei_contig1043:3290..34331683185868.9737039-CDS-P-wetherbeei_contig1043:3290..3433Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1043 3291..3433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1043.1.6

>prot_P-wetherbeei_contig1043.1.6 ID=prot_P-wetherbeei_contig1043.1.6|Name=mRNA_P-wetherbeei_contig1043.1.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=610bp
MSHDRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGL
YDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLL
RSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPED
DAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDRTFRELVDD
LIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGV
LSAMQTMWRRELNGVGADDSEPEQQDDDCGSDEACGGGGGDAADSAGDRS
DHGREEEEGRGGRGGGGGQKEAGKEEFLPPKEVELQMKLLWEKEWALLSL
VFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHP
QNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAELQRALGLWIE
LQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGK
RVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVE
AGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLLSSPGQKVWRHLD
DGDIMLVNRQ
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mRNA from alignment at P-wetherbeei_contig1043:215..3433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1043.1.6 ID=mRNA_P-wetherbeei_contig1043.1.6|Name=mRNA_P-wetherbeei_contig1043.1.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3219bp|location=Sequence derived from alignment at P-wetherbeei_contig1043:215..3433- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCACGATCGGACAGTCGTGCGGCATTCTGTGGAACGTGTTCATTT CGGCTTCCTCCACGACGATGAGATACGGAGCATGAGCGTCAAGCAGATAA CGTCTCCAACAACCTTCGACGCGCTCAACAACCCGCTTCCTGGGTACGTT TTCCTTTGATGAATCGTCTACTCGATTGATATCCGCTGCTTAAGGAGCGC TAGCAACGAGTTGCGTCTATGAATCGCTTAAAATCCGAAATTTGGGAGTG TGTGGTCGCCTAAGGAGCTCTGCTTTTGCCGCCATCCACACTTGCACAGG GGACTGTATGACCGAGCGCTGGGTCCCACGGAGATGTTTGTGCCCTGCGA GACGTGCGGCCAAGATCAGCGGCATTGTCCTGGCCACCTCGGTCACATCG AGCTGGCCGTGAGCGTGTATCACCCAATGCTCTTCCCCATCTTGTACAAG CTCCTGCGGTCCAAGTGCTTCAGCTGCCATCGCTTGCGCCTCGCCGCCTT CAAAGCCCGCGTCTGCTGCGTCCAGCTCATGTTGTGCGACGCCGGCGACG CCATCGCCGCTCGCAATCTGGCTGACGAGCTCAACGCTGCCCTTACACCG GAAGATGACGCTGCAGACGTCGAGGCCGCGGGCGCGGGACGCATAGGCTC CGTCGAGCCCGTCCTGCGGACACATGAAAAGAGGCTGCGGGCGCTTGCCG GGAACGGCAGAGGCTGCCAGGGCCATGATAGAACATTCAGGTAAGAAGAT CGAAGCCGCGGCGTCGGCGACGTTTTTACTTGACGTAATGACGGTCATCG TCATTTGCTTTTCTGGCAGGTAGGCAGGCAGCTGGGCGGCGGCCGACTCT TTTGCTTCTTCGCTATGACGATTCATGGATATTTGTCAGGTCGCGATCGC CAGTGACGATACCATTTCATGTTGCCTTCCTTCCGAGCGAACCAGACTGA CAGTTGCCACCCCGATGCCACCTACCCCTTATGCATGGGCGAGAACTCAT GCTCGTTATTCTTGACTGAAGTACGCTTTTCCCTCTCCCCACTCCTTCTG TGCTGTCTTCCCCTGCGAAACGATGCGTCACGGGGCCGTCAAACGTATGT ATGGTATTGGACCGCCTCAATCGCCACTGCCGCCCGCCTTCTCGCCGTGC CGGTAACGGCCGCAATATCGACCCCAACCGCCCCGGATGGGCGACGGACG GATGGGGGGCAATTTCCTTCCTTCAACCGCTCGGTCGCTGCTCGGCGCAG GAGAGAACTCGTGGACGACCTCATCAAGACGATGGCGTCCGTGGCGAAAT GCGAGAATTGCGGCTACCAGAGCCCAAAGGTCCGCAAGGACGGCCACAGC AAGCTGTTCCAACGGCCGCTGACGGTGAAAGGTCGCGGCACCAACCGCGG CCTCGGCGGCCGCGGCGTGCTATCCGCCATGCAGACGATGTGGCGCCGGG AGCTGAACGGGGTCGGCGCGGACGATTCGGAACCCGAGCAGCAAGATGAT GACTGCGGCAGCGACGAAGCTTGCGGCGGCGGCGGCGGCGACGCGGCCGA CAGCGCGGGCGACCGAAGCGACCACGGCAGGGAAGAGGAGGAGGGAAGGG GGGGGCGCGGCGGCGGCGGCGGCCAGAAGGAGGCGGGGAAGGAGGAGTTT CTACCGCCGAAGGAAGGTGTGTCGGTTTGGGTGGCCGTTCTCTCTTTCAT CTTGGGTTGATGCCGGTGGGTTTGAGGAAGGGGAGCTGGTTAGGGAAGTT TGACCGTTGCCTATATGCTGCCATATTTCCGCTTTGGGCGCAACAAGTGG ACACAATCCTTATTTTGGTACGCTGCATCACAGCAAAGCTCCTGCGTTGC GGATTTCAACAGTCTTGTGTTTCCTTCGAGGTGAGTTTGCCTGTTTCCCT CTGCATATCAACGCTTCCCCTTTGTCCGCTTTGCCCTCACTCACTTTGGC CATCATTTCTCTTGCCCATTTCGGCCACACTTTCTCCCCCTTTGCCCATC GCCAGTGGAGCTGCAAATGAAGCTGCTATGGGAGAAGGAATGGGCGCTGC TTTCGTTGGTCTTTGGCTCGGCGTGGCGGGCCGGCCCCAAGCAGCCCTTG GGGGTGGTCGCGACTGCGGCGGTGGCAGCGCCGCCACAGGTGGCGGAGCA GGCCACGCCGCTCTTTCTCGCGGAGAAGGAGGCGGCCGGCGGCTACCGCC TCTTCTTCGTGCGCCTGCTGGCGGTGCCGCCGCCGCGCTTCCGGCCGCCG ATGGCCGTTGGCGGCATGGTCGCCGAGCACCCGCAGAACGTGCACCTCAG CCGCGTGCTAGCGCTCAACGAGCGGCTGCTCAACACGGAGCGGCAGCGGC AGCAGCGCGGTGGGAGCGGGAGTGACAGCGCCGGGCTGCTGGCGGGTGCG GAGCTTCAGCGGGCGCTGGGGCTGTGGATCGAGCTGCAGGATGCCGTCAA CGTCTTCATGGACAGCAGCAAGGAGCGGCGCGGCGCAGGGACCGCTTCTA TCATCCAGCAGCCGGGCCTGCGGCAGGCGCGTCTTGTTTTTGTTAGTCTG GGAAGAACGGTCATTCAGAACCGTCAGTGTGGCTGGCCGGCGAAACGAAT ATGGTGGACGGATAGCATCCGTCTATTTGTCGTTCTTTGTGTAGCTGTTG TTTGGTTTGCCCGTTTGCCGGCTGCGCTTGTCATCACAGCCTGATGTGAC CGCGTCGGCAAGACCCCTGCGGTCCTCCGGTCTCGTTGCCTGCCTACCTC TATCCGCTTAAGTTGCCTCCCCCTATCGCCTGCCTTGCTTGCGCTGCCCA CCTCGTTTTTTCCTTCCTTCCGCCCCTCCGGCGTCGCGCAGGTCCTGGAG AAGAAGGAAGGGCTGTTCCGCAAGCACATGATGGGCAAGCGCGTTAACTA CGCCTGCCGCTCCGTCATCAGCCCGGACCCCTACGTCGGCACTTCGGAGA TCGGCATCCCGCTGCGGTTCGCCCGCGTCCTCACCTACCCGCAGCCCGTC GCCCCCTGGAACGTGGCGCGCATGCGGGGGCTGGTCGAGGCCGGGGCGGA GGTGCATCCAGGCGCGAACTACGTGGAGGATGCCGCCGGACGGTTGACGG ACTTGGGGCGGCTGCCGCGAGCGCGGCGACAGGCGCTGGCGGCGCGGCTG CTGTCATCGCCGGGACAGAAGGTGTGGCGGCACCTCGACGACGGCGACAT CATGCTCGTCAACCGACAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1043:215..3433-

>mRNA_P-wetherbeei_contig1043.1.6 ID=mRNA_P-wetherbeei_contig1043.1.6|Name=mRNA_P-wetherbeei_contig1043.1.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1830bp|location=Sequence derived from alignment at P-wetherbeei_contig1043:215..3433- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCACGATCGGACAGTCGTGCGGCATTCTGTGGAACGTGTTCATTT
CGGCTTCCTCCACGACGATGAGATACGGAGCATGAGCGTCAAGCAGATAA
CGTCTCCAACAACCTTCGACGCGCTCAACAACCCGCTTCCTGGGGGACTG
TATGACCGAGCGCTGGGTCCCACGGAGATGTTTGTGCCCTGCGAGACGTG
CGGCCAAGATCAGCGGCATTGTCCTGGCCACCTCGGTCACATCGAGCTGG
CCGTGAGCGTGTATCACCCAATGCTCTTCCCCATCTTGTACAAGCTCCTG
CGGTCCAAGTGCTTCAGCTGCCATCGCTTGCGCCTCGCCGCCTTCAAAGC
CCGCGTCTGCTGCGTCCAGCTCATGTTGTGCGACGCCGGCGACGCCATCG
CCGCTCGCAATCTGGCTGACGAGCTCAACGCTGCCCTTACACCGGAAGAT
GACGCTGCAGACGTCGAGGCCGCGGGCGCGGGACGCATAGGCTCCGTCGA
GCCCGTCCTGCGGACACATGAAAAGAGGCTGCGGGCGCTTGCCGGGAACG
GCAGAGGCTGCCAGGGCCATGATAGAACATTCAGAGAACTCGTGGACGAC
CTCATCAAGACGATGGCGTCCGTGGCGAAATGCGAGAATTGCGGCTACCA
GAGCCCAAAGGTCCGCAAGGACGGCCACAGCAAGCTGTTCCAACGGCCGC
TGACGGTGAAAGGTCGCGGCACCAACCGCGGCCTCGGCGGCCGCGGCGTG
CTATCCGCCATGCAGACGATGTGGCGCCGGGAGCTGAACGGGGTCGGCGC
GGACGATTCGGAACCCGAGCAGCAAGATGATGACTGCGGCAGCGACGAAG
CTTGCGGCGGCGGCGGCGGCGACGCGGCCGACAGCGCGGGCGACCGAAGC
GACCACGGCAGGGAAGAGGAGGAGGGAAGGGGGGGGCGCGGCGGCGGCGG
CGGCCAGAAGGAGGCGGGGAAGGAGGAGTTTCTACCGCCGAAGGAAGTGG
AGCTGCAAATGAAGCTGCTATGGGAGAAGGAATGGGCGCTGCTTTCGTTG
GTCTTTGGCTCGGCGTGGCGGGCCGGCCCCAAGCAGCCCTTGGGGGTGGC
GGCCGGCGGCTACCGCCTCTTCTTCGTGCGCCTGCTGGCGGTGCCGCCGC
CGCGCTTCCGGCCGCCGATGGCCGTTGGCGGCATGGTCGCCGAGCACCCG
CAGAACGTGCACCTCAGCCGCGTGCTAGCGCTCAACGAGCGGCTGCTCAA
CACGGAGCGGCAGCGGCAGCAGCGCGGTGGGAGCGGGAGTGACAGCGCCG
GGCTGCTGGCGGGTGCGGAGCTTCAGCGGGCGCTGGGGCTGTGGATCGAG
CTGCAGGATGCCGTCAACGTCTTCATGGACAGCAGCAAGGAGCGGCGCGG
CGCAGGGACCGCTTCTATCATCCAGCAGCCGGGCCTGCGGCAGGCGCGTC
TTGTCCTGGAGAAGAAGGAAGGGCTGTTCCGCAAGCACATGATGGGCAAG
CGCGTTAACTACGCCTGCCGCTCCGTCATCAGCCCGGACCCCTACGTCGG
CACTTCGGAGATCGGCATCCCGCTGCGGTTCGCCCGCGTCCTCACCTACC
CGCAGCCCGTCGCCCCCTGGAACGTGGCGCGCATGCGGGGGCTGGTCGAG
GCCGGGGCGGAGGTGCATCCAGGCGCGAACTACGTGGAGGATGCCGCCGG
ACGGTTGACGGACTTGGGGCGGCTGCCGCGAGCGCGGCGACAGGCGCTGG
CGGCGCGGCTGCTGTCATCGCCGGGACAGAAGGTGTGGCGGCACCTCGAC
GACGGCGACATCATGCTCGTCAACCGACAG
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