prot_P-wetherbeei_contig1043.1.6 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1043.1.6
Unique Nameprot_P-wetherbeei_contig1043.1.6
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length610
Homology
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI)

HSP 1 Score: 537 bits (1384), Expect = 1.500e-174
Identity = 335/635 (52.76%), Postives = 401/635 (63.15%), Query Frame = 0
Query:    1 MSHDRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRAL----AGNGRG--CQGHDRTFR-ELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGK-EEFLPPKEVELQMKLLWEKEWALLSLVF--GSAWRAGPKQPLG-----------VAAG----GYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAELQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLLSSPGQKVWRHLDDGDIMLVNRQ 610
            MSHDRTV+RH+VE + FGFL DD+IR +SVK+ITSP TFD LNNPLPGGLYD  LGP +  + CETCGQDQ++CPGH+GHIELAVSVYHP+LF  LYKLLR+KCFSCH LRL+  K RV  V++ML DAG A  A  L   L   L  +D A D +        ++    +  +  L  L    AG  R   C GH+R  R +L ++LIK M +  +CENCG  SP +RKDG +KLFQ PL+ K R  N+    + ++SA+Q   RR+      D      XXXXXXXXXXXX                                 K   +  +F+PP EVELQM+ LW+ E ++L L+F  G   R+ P    G           +A G    GYRLFFVR LAVPPPRFRPPM +G M+AEHPQNV+L++VL LNE L N               A  L G +L   L  W+ELQ  VN +MDSSK+ RG         PGLRQ   VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGT+EIGIPLRFA+ LTYPQPVA WNV  MR LVE G  V+PGAN+VED++GR+  L RL   +R+ +AARLLSSPGQKVWRHL DGD MLVNRQ
Sbjct:    1 MSHDRTVIRHAVEEIGFGFLTDDDIRRLSVKRITSPVTFDTLNNPLPGGLYDPVLGPVDKMMMCETCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKMMLVDAGRAQEALELDATLLGYL--KDGARDHDVLDGNTEDTLVSATKYRDHVLGCLEEDLAGAPRAEWCGGHNRQLRRQLAENLIKAMGACKRCENCGAFSPNIRKDGSNKLFQVPLSDKNRMANQSCNTQ-IVSAVQ---RRDPGKPNEDXXXXXXXXXXXXXXXXXXNLEDDDVGGSAPSSKVVGVSLAAAQAAAGDPATKTGAQAHKFMPPIEVELQMQQLWKLESSVLDLIFVSGRRTRSAPGDVNGPPSFSLQNANDLAGGSISDGYRLFFVRALAVPPPRFRPPMNMGDMIAEHPQNVYLTKVLNLNESLKN---------------AASLKGKDLASVLTTWVELQTTVNCYMDSSKDPRGLKDTP----PGLRQ---VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVWRHLTDGDCMLVNRQ 607          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 528 bits (1359), Expect = 7.220e-166
Identity = 339/643 (52.72%), Postives = 413/643 (64.23%), Query Frame = 0
Query:    1 MSHDRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRAL------AGNGRGCQGHDRTFR-ELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGK---------EEFLPPKEVELQMKLLWEKEWALLSLVFGS------------AWRAGPKQPL-----GVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAELQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLLSSPGQKVWRHLDDGDIMLVNRQ 610
            MSHDRTV+RH+VE + FGFL DD+IR +SVK+ITSP TFD LNNPLPGGLYD  LGP +  + C TCGQDQ++CPGH+GHIELAVSVYHP+LF  L+KLLR+KCFSCH LRL+  K RV  V++ML DAG A  A  L   L   L  +D A D +        ++    +  ++ L  L      A     C GH+R  R +L ++LIK + +  +CENCG  SP +RKDG +KLFQ PL+ K R  N+    + ++SA+Q   RR       D  +P + XXXXXXXXXXXXXXXXXXXXXXX                      +AG           EF+PP EVELQM+ LW++E + L L+F S              R+   Q +     G  + GYR FF+R+LAVPPPRFRPPM +G ++AEHPQNVHL++VL LNE L N            +DS   L G +L   L  W+ELQ  VN +MDSSK+ RG         PGLRQ   VLEKKEGLFRKHMMGKRVNYACRSVISPDPY+GT+EIGIPLRFA+ LTYPQPVA WNV  MR LVE G  V+PGAN+VED++GR+  L RL   +R+ +AARLLS PGQKVWRHL DGD MLVNRQ
Sbjct:    1 MSHDRTVIRHAVEEIGFGFLTDDDIRKLSVKRITSPVTFDTLNNPLPGGLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALFKLLRAKCFSCHNLRLSKSKTRVAAVKMMLVDAGRAQEALELDATLLGYL--KDGAKDHDVLDGNTEDTLVSATKHRDRVLGCLEEDLADAPRADWCGGHNRQLRRQLAENLIKAIGACKRCENCGAFSPNIRKDGSNKLFQVPLSDKNRMANQTCNTQ-IVSAVQ---RR-------DPGKPNEDXXXXXXXXXXXXXXXXXXXXXXXDDIAGSAPSSKVVGVPLAAAQADAGNPAAKRGAQFHEFMPPIEVELQMQQLWKQECSTLDLIFVSDRRTRTVPGDVSGARSSSSQNVDGLHRGGISDGYRFFFMRVLAVPPPRFRPPMNMGDLIAEHPQNVHLTKVLNLNESLKN------------ADS---LKGDDLASVLTTWVELQTTVNCYMDSSKDPRGLKETP----PGLRQ---VLEKKEGLFRKHMMGKRVNYACRSVISPDPYLGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSIPGQKVWRHLKDGDCMLVNRQ 608          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 464 bits (1194), Expect = 1.610e-143
Identity = 299/620 (48.23%), Postives = 380/620 (61.29%), Query Frame = 0
Query:    1 MSHDRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSV----EPVLRTHEKRLRALAGNGRGCQGHDRTFRELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWR-----AGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAELQRALGLWIELQDAVNVFMDSSKERR-GAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLLSSPGQKVWRHLDDGDIMLVNRQ 610
            MSHDR V+RH VE V FGFL  DEIR++SVKQITSP TFDALNNPLPGGLYD ALGP++    C TCGQD   CPGH+GHIELA  VYHP+LFPIL+KLL++KCFSCH+LR+ +   R+  V++ LCDAG+   AR+L               D E AG G   +     E +L    + + A+              R++ DD+IK + +  KC+NCG  SP +RKDGH+KLF +PL+ K +  N       +++A      + +    A  ++P     XXXXXXXXXXXXXXXXXXXXXXXXXX                     ++++ P E + QM+LLWEKE  LLSL+F ++       + P+   G    G+RLFF++ +AVPPPRFRPPM +  MVAEHPQN +L++                                             + +N F+DSSK+    A  A+    PGLRQ   +LEKKEGLFRKHMMGKRVN++CRSVISPDPY+GT+EIGIP RFA+VL +PQPVA WNV  +R LVE GA+ +PGANY+EDAAG+L +L R    +R+ +AARLLS PGQKVWRHL D D MLVNRQ
Sbjct:    1 MSHDRQVIRHKVEEVKFGFLSGDEIRAISVKQITSPLTFDALNNPLPGGLYDPALGPSQQRAVCPTCGQDHLSCPGHVGHIELAAEVYHPLLFPILFKLLKTKCFSCHKLRMNSQTCRIYAVKMALCDAGETNMARSL---------------DAEIAGGGAEANTDEGDEDLLPDKAETISAILAR-----------RQIADDVIKAIGACKKCQNCGAFSPVLRKDGHTKLFLKPLSDKMQKANN------LVAAKMGSAMQAIKDKAAAANQPGNDSDXXXXXXXXXXXXXXXXXXXXXXXXXXDEH------------------DQYVSPLEAQAQMQLLWEKEGHLLSLLFKTSMPPPKLLSAPQPVAGYDPQGFRLFFMKTIAVPPPRFRPPMVMADMVAEHPQNQYLTK---------------------------------------------NQINCFIDSSKDTSVNAKDAA----PGLRQ---ILEKKEGLFRKHMMGKRVNHSCRSVISPDPYIGTTEIGIPERFAKVLCFPQPVAAWNVEHLRTLVENGADFYPGANYIEDAAGKLINLRRQSAVQRKGMAARLLSEPGQKVWRHLQDRDAMLVNRQ 518          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A421EWZ9_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EWZ9_9STRA)

HSP 1 Score: 404 bits (1039), Expect = 1.080e-120
Identity = 257/636 (40.41%), Postives = 350/636 (55.03%), Query Frame = 0
Query:    4 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDRTFR-----------ELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNG----VGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAE----LQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLL----SSPG------QKVWRHLDDGDIMLVNRQ 610
            D+T++RH V  V FGF  D EIR +SVKQ+TS  +FD+LNNP+ GGLYD ALGP +  + C TC Q Q+ CPGHLGHIEL V VY+P+LF +L  LL+ KCF+CH+ R+A+  +RV  V+++L D G    A  L + L      ED+          R    +  +    +RL AL+ +     G  R  R           +L  + +K + +  KCENCG  SP VR+D  +K+F + L+ + R  NR      V SA+ T+     +G    V  DDSE E                                                  + +FLPP E++ Q++L+W+ E  L+ L +G        +  G    G+R FF+  + V P RFRPP+ +G    EH QN HLS+++AL+E ++  +  ++Q G + SD     A  E    L R L LW ELQ +VN+ +DSSK + G   A  I+Q        V+EKKEGLFRKHMMGKRVNYA RSVISPDPY+ TS+IG+PLRFA+ LTYPQPV PWNV  MR LV  G +VHPGAN+VE   GRL DL +    +R+A++  LL    S+ G      ++VWRHL  GD++L+NRQ
Sbjct:  485 DQTILRHEVAEVAFGFYSDAEIRELSVKQLTSRLSFDSLNNPVVGGLYDPALGPVDFNMICPTCHQTQKECPGHLGHIELPVPVYNPVLFNVLLTLLKRKCFTCHKFRVASASSRVIRVKILLLDNGFTDEAAQLGELLEQRNGVEDEPPQ-------RTFQRQQAILDEYERL-ALSKSNSSTYGKTRLLRPLHRSAEVQREKLATEFLKNVKN--KCENCGAISPAVRQDASAKIFLKALSARSRKVNRSKN-LTVTSALDTIRGNVSDGDDEPVNGDDSESEMEDDEDKYATTED----------------------------------STSRSKFLPPLEIQSQLQLMWQNEDGLMELFYGDR-NIASGRTTGRKPDGWRKFFLNAIPVAPSRFRPPVFMGDKQFEHAQNSHLSKIMALSESIVQGDYYKRQ-GVTNSDGDDSDAEKEEKVNLSRKLALWTELQTSVNLLVDSSKAKPGTDVAQGIKQ--------VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRRLVINGPDVHPGANFVESETGRLIDLSKRSPHQREAISKTLLTRSASAQGTSKNRVKRVWRHLKTGDVVLMNRQ 1065          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A484E7B9_BRELC (DNA-directed RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7B9_BRELC)

HSP 1 Score: 403 bits (1035), Expect = 1.180e-120
Identity = 249/630 (39.52%), Postives = 352/630 (55.87%), Query Frame = 0
Query:    4 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDR-------------TFRELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAELQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLLSSPG----------QKVWRHLDDGDIMLVNRQ 610
            D+T++RH V  V FGF  DDEIR +SVKQI+S  +FDALNNP+ GGLYD +LGP +  V C TC Q Q+ CPGHLGHIEL V VY+P+LF  +  LL+ KCF+CH+ R A  ++RV  V+++L D G    A  L + L      ED+ +         I   + +L  +E+    LA + R C  + +             T  +L  D +K++ +  KCENCG  SP VR+D H+K+F + L+ + R  NR    + V SA+ T+ R  ++    D +                                                   + + +FLPP EV+ Q++L+W+ E  L+ L++G    A  +  L +   G+  FF+ ++ V P RFRPP+ +G    EH QN HLS++++  + ++ TE  ++       + A      +L R L LWIELQ+AVN+ +DSSK + G   A  I+Q        V+EKKEGLFRKHMMGKRVNYA RSVISPDPY+ TS+IG+PLRFA+ LTYPQPV PWNV  MR LV  G ++HPGAN+VE  +GRL DL +    +R+A++  LL+             ++VWRHL  GD++L+NRQ
Sbjct:    6 DQTILRHEVAEVAFGFYSDDEIRDLSVKQISSRLSFDALNNPVLGGLYDPSLGPVDYNVICPTCRQTQKECPGHLGHIELPVPVYNPVLFSQMLTLLKRKCFTCHKFRQAGARSRVLRVKILLLDNGYVNEAAQLGELLEQRNGIEDEPSQ------RTIQRQQAILDEYER----LALSRRSCSNNGKINLLCPLPRFAEVTREKLTTDFLKSIKN--KCENCGAISPAVRQDAHAKIFLKGLSARSRKVNRSKN-QAVTSALDTI-RGSVSDYNDDLASGNVSYTNDGFVNGDDSDSAMDYDEEAVMEDL-------------------SSQSKFLPPLEVQSQLQLMWKNEDGLMELLYGDRNIANGRI-LDLKPDGWCKFFLNVIPVAPSRFRPPVFMGDKQFEHAQNSHLSKIMSFCDSIVQTENSKRHAATLEENDADNEQQVDLSRKLALWIELQNAVNLMVDSSKAKPGTEVAQGIKQ--------VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDMHPGANFVESESGRLIDLSKRTPHQREAISKTLLTRSASALGTSKNRVKRVWRHLKTGDVVLMNRQ 593          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: K8YRY5_NANGC (DNA-directed RNA polymerase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRY5_NANGC)

HSP 1 Score: 403 bits (1035), Expect = 1.540e-120
Identity = 278/629 (44.20%), Postives = 363/629 (57.71%), Query Frame = 0
Query:    4 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRA-LAGNGR----GCQGHDRTFRE-LVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGR--GTNRGLGGRGVLSAMQTM--WRREL---NGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWR-----AGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVG-GMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAELQRALGLWIELQDAVNVFMDSSKE---RRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLLSSPGQKVWRHLDDGDIMLVNRQ 610
            +R VVRH V  V FG   ++EI  +SV ++++  T+D L NPLPGGLYD A+GP +    C TC    R CPGH+GH  L++ VY+P+ F I+++ LR KCF CH  RL+ F   V  ++L L DAG A    + AD L+ AL      AD+  +          +LR  E RLR  L   G+       G  +  R  L+ D ++ + S   C+ C      VRKDG++K F     V+GR  G +RG G   + SA+  +   R E+   NG G DDS+ E+  XXXXXXXX                                    EA   E++ P EV++ MKLLWE E  L +L++G A       + P    G  A G++  F R+L V P RFRPP     G +AEHPQN ++ +++ L+ER+    R+    GG G+     L    L R L  WI+LQ+AVN ++DSSK+   R G G  +    PG+RQ    LEKKEGLFR HMMGKRVN+ACRSVISPDPY+GTSEIG+PLRFA+VLTY QPV P+N A++R  VE GAE HPGANYVEDA GRL DL R+   RR+ALAARLL+ PGQ VWRHL DGD++L+NRQ
Sbjct:   11 ERCVVRHDVSEVQFGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALKLGLIDAGLA----HEADSLDQALFR----ADLHRS---------TILRDTEMRLRRHLQTAGQVPKSWIPGETKIKRRALIKDFLQEVLSCKTCDRCSAPKTTVRKDGYTKFF-----VRGRRAGHSRGAGAH-IPSALAVVRNGRHEVECGNGFG-DDSDGEESEXXXXXXXXASQERFAARGGDT-----------------------EAEGGEYMAPAEVQMHMKLLWEAEPELATLIWGKAAVEKSVFSAPGADTG-RADGWKTLFWRVLPVTPSRFRPPSKNDDGSLAEHPQNYNVIKIMNLDERIRALLRKED--GGEGATGPENLPAEALSRVLSTWIDLQNAVNGYIDSSKDANARLGGGNLT----PGIRQG---LEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPGQTVWRHLQDGDMVLMNRQ 582          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: H3H1S7_PHYRM (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3H1S7_PHYRM)

HSP 1 Score: 400 bits (1027), Expect = 1.340e-119
Identity = 255/634 (40.22%), Postives = 354/634 (55.84%), Query Frame = 0
Query:    4 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDRTFR-----------ELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNG----VGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDS--AGLLAGAELQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLL----SSPG------QKVWRHLDDGDIMLVNRQ 610
            D+T++RH V  V FGF  D EIR +SVKQ+TS  +FD+LNNP+ GGLYD A+GP +  + C TC Q Q+ CPGHLGHIEL V VY P+LF  ++ LL+ KCF+CH+ R+A+ ++RV  V+++L D G    A  L + L      ED+          R    +  +    +RL AL+ +     G  +  R           +L  + +K M +  KCENCG  SP +R+D ++K+F + L+ + R  NR      V SA+ T+     +G    +  DDSE E                                                + + +FLPP EV+ Q++L+W+ E  L+ L++G    A  +   G    G+R FF+ ++ V P RFRPP+ +G    EH QN HLS+++ L E ++  +  ++Q G + SD   A   A   L R L LW ELQ+AVN+ +DSSK + G   A  I+Q        V+EKKEGLFRKHMMGKRVNYA RSVISPDPY+ TS+IG+PLRFA+ LTYPQPV PWNV  MR LV  G +VHPGAN+VE   GRL DL +    +R+A++  LL    S+ G      ++VWRHL  GD++L+NRQ
Sbjct:    6 DQTILRHEVAEVAFGFYSDAEIRDLSVKQLTSRLSFDSLNNPVMGGLYDPAMGPVDFNMICPTCHQTQKECPGHLGHIELPVPVYSPVLFGQMFNLLKRKCFTCHKFRVASARSRVVRVKILLLDNGFENEAAQLTELLEQRNGVEDEPPQ-------RTLQRQQAILDEYERL-ALSKSLSSTNGKTQLLRPLPRLAEVEREKLATEFLKGMKN--KCENCGAISPALRQDANAKIFLKGLSARARKVNRSKN-LTVTSALDTIRGNVSDGEADPMNGDDSESEMEDDEDKYAMTED----------------------------------SSSRSKFLPPLEVQSQLQLMWQNEDGLMELLYGDRHIASGRIS-GRKPDGWRKFFLNVVPVAPSRFRPPVFMGDKQFEHAQNSHLSKIMTLAESIVQGDYYKRQ-GATTSDEEDAEKEAQVNLSRKLALWTELQNAVNLLVDSSKAKPGTDVAQGIKQ--------VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFVESENGRLIDLSKRSPHQREAISKTLLTRSASAQGTSKNRVKRVWRHLKTGDVVLMNRQ 584          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A2D4BVH8_PYTIN (DNA-directed RNA polymerase subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVH8_PYTIN)

HSP 1 Score: 399 bits (1025), Expect = 2.670e-119
Identity = 259/645 (40.16%), Postives = 353/645 (54.73%), Query Frame = 0
Query:    4 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDRTF-------------RELVDDLIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWR----RELNGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQR---GGSGSDSAGLLAGAE--------LQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLL----SSPG------QKVWRHLDDGDIMLVNRQ 610
            D+T++R+ V  V FGF  DDEIR +SVKQITS  ++D LNNP+ GGLYD ALGP +M V C TC Q Q+ CPGHLGHIEL V VY+P+LF  +  +L+ KCF+CH+ R A+ ++RV  V+++L D G    A  L++ L      ED                EP  RT + R +A+          D+T               +LV + +K M   AKCENCG  SP +R+D  +K+F +PL+ + R  NR      + SA+ T+      RE      DDSE +                                                    +FLP  EV+ Q++++W  E  L+ L++G+   A  +   G  A G++ FF+ ++ V P RFRPP+ + G + EH QN  L ++LA++E ++ T+ Q+QQR       SDS G     +        L R L LW ELQ A+N  +DS+K R G         PG++Q   V+EKKEGLFRKHMMGKRVNYA RSVISPDPY+ TS+IG+PLRFA+ LTYPQPV PWNV  MR LV  G +VHPGAN+VE   GRL DL +    +R+A++  LL    S+ G      ++VWRHL  GD++L+NRQ
Sbjct:    6 DQTILRYEVREVAFGFYSDDEIRDLSVKQITSRVSYDTLNNPVIGGLYDPALGPVDMNVLCPTCHQTQKECPGHLGHIELPVPVYNPVLFAQMLNILKRKCFTCHKFRTASARSRVLRVKILLLDNGFHEEAATLSELLEQRNGVED----------------EPPARTFQ-RQQAILDEYERLALRDKTALLAPLPRVVEVQRNKLVAEFLKGMK--AKCENCGAISPGLRQDASAKIFLKPLSARSRKVNRQKN-LTISSALDTIHGNISDREDGNDSGDDSESDMEDAGFAQAED------------------------------------STSGSKFLPTLEVQSQLQMMWRAEDGLMELLYGNRHIANGRVR-GAKAEGWKKFFLNVVPVAPSRFRPPVFMAGQMFEHAQNTALGKILAVSESIVQTDYQQQQRLQLSNKKSDSDGDETNEDEDAAPTINLARKLALWTELQTAINGLVDSTKVRDGP--------PGIKQ---VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFVESETGRLIDLSKRTPHQREAISKTLLTRSASAQGSSKNRVKRVWRHLQTGDVVLMNRQ 582          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A8K1FLQ6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLQ6_PYTOL)

HSP 1 Score: 390 bits (1002), Expect = 3.900e-116
Identity = 261/640 (40.78%), Postives = 356/640 (55.62%), Query Frame = 0
Query:    4 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDRTFRELVDDLIKTMASVA-----------------KCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNGVGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAE------LQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLL----SSPG------QKVWRHLDDGDIMLVNRQ 610
            D+T++R  V  V FGF  +DEIR++SVKQITS  +FD+LNNP+ GGLYD ALGP +  V C TC Q Q+ CPGHLGHIEL V VY+P+LF  +  LL+ KCF+CH+ R A+ ++RV  V+++L D G    A  L++ L      ED                EP  RT +++   L    R      +  ++  +D +K +  VA                 KCENCG  SP +R+D  +K+F +PL+ + R  NR      V SA+ T     +NG  +D  + E                            XXXXXXXX                +FLPP EV+ Q++++W  E  L+ L++G        +  G    G++ FF+ ++ V P RFRPP+ +GG + EH QN  LS++L ++E ++ T+  + Q+  S SD       +E      L R L LW ELQ AVN  +DS+K R G         PG++Q   V+EKKEGLFRKHMMGKRVNYA RSVISPDPY+ TS+IG+PLRFA+ LTYPQPV PWNV  MR LV  G ++HPGANYVE   GRL DL +    +R+A++  LL    S+ G      ++VWRHL  GD++L+NRQ
Sbjct:    6 DQTILRAEVREVAFGFYSNDEIRNLSVKQITSRVSFDSLNNPVIGGLYDPALGPVDYDVLCPTCHQTQKECPGHLGHIELPVPVYNPVLFSQMLNLLKRKCFTCHKFRTASARSRVLRVKILLLDNGFHDEAAMLSELLEQRNGVED----------------EPPARTFQRQQAILDEYERLALSAVKEQKK--NDRLKPLPRVAEVQRNKLCAEFMKGMKNKCENCGAISPGIRQDASAKIFLKPLSARSRKVNRQKN-LTVSSALDT-----INGNVSDHDKDE--------------------------GDXXXXXXXXEDDSKFANAEDSTSGSKFLPPLEVQSQLQMMWRSEDGLMELLYGDR-NVANGRIRGAKPEGWKKFFLSVVPVAPSRFRPPVFMGGQMFEHAQNTALSKILTMSESIVQTDNYKPQKQKS-SDXXXXXXXSEQEVAVNLARKLALWTELQSAVNGLVDSTKVRDGP--------PGIKQ---VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVMNGPDIHPGANYVESETGRLIDLRKRTPHQREAISKTLLTRSASAQGTSKNRVKRVWRHLQTGDVVLMNRQ 582          
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Match: A0A5D6XPF2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPF2_9STRA)

HSP 1 Score: 390 bits (1002), Expect = 4.200e-116
Identity = 255/638 (39.97%), Postives = 354/638 (55.49%), Query Frame = 0
Query:    4 DRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGLYDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLLRSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPEDDAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDRTFREL--VDDLIKTMASV-------AKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGVLSAMQTMWRRELNG---VGADDSEPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGKEEFLPPKEVELQMKLLWEKEWALLSLVFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHPQNVHLSRVLALNERLLNT---ERQRQQRGGSGSDSAGLLAG------AELQRALGLWIELQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVEAGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLL----SSPG------QKVWRHLDDGDIMLVNRQ 610
            D+T++R+ V  V FGF  D EIR +SVKQ+TS  +FDALNNP+ GGLYD ALGP +  + C TC Q Q+ CPGHLGHIEL V VY+P+LF  +  LL+ KCF+CH+ R A+ ++RV  V+L+L D+G    A  LA+ L      ED+               + +L  +E+    LA +  G Q   +  R+L  + ++ +   +        AKCENCG  SP +R+D  +K+F R L+ + R  NR      V SA+ TM    ++G   +G+DDS+                                                  + + +FLPP EV+ Q++L+W+ E  L+ L++G    A  +      A G+R FF+ ++ V P RFRPP+ +G    EH QN +LS++L L+E ++     E+Q+  R G+                  L R L +W ELQ  VN  +DSS+ + GA  A  I+Q        V+EKKEGLFRK+MMGKRVNYA RSVISPDPY+ TS+IG+PLRFA+ LTYPQPV PWNV  MR LV  G +VHPGAN+VE  +GRL DL R    +R+A++  LL    S+ G      ++VWRHL  GDI+L+NRQ
Sbjct:    6 DQTILRYEVAEVAFGFYSDAEIRELSVKQVTSRLSFDALNNPVVGGLYDPALGPVDFHMICPTCHQTQKECPGHLGHIELPVPVYNPVLFGHMLTLLKRKCFTCHKFRSASARSRVLRVKLLLIDSGFDDEAATLAELLEQRNGVEDEPQQQ------TFRRQQAILDEYER----LALSQAGAQQRGQRLRQLARLSEVQREKLAAEFFKGLKAKCENCGAISPGLRQDAKAKIFLRGLSARSRKANRSKN-LTVTSALDTM-HGNVSGDERMGSDDSDDS-------------------------------GSESELEDGKFAASEDTSSRSKFLPPLEVQSQLQLMWKNEDGLMELLYGDRNVASGRA--AAPADGWRKFFLNVIPVAPSRFRPPVFLGDKQFEHAQNSYLSKILTLSENIVQGSYYEQQKLPRAGAEDGXXXXXXXXXTAPQVNLARKLAVWTELQVNVNCLVDSSQAKAGADAAQGIKQ--------VIEKKEGLFRKNMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFVESESGRLIDLKRRSAHQREAISKTLLTRSASAQGTSQHRVKRVWRHLHTGDIVLMNRQ 590          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1043.1.6 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNY1_ECTSI1.500e-17452.76DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A6H5KJ16_9PHAE7.220e-16652.72DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836C8M0_9STRA1.610e-14348.23DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A421EWZ9_9STRA1.080e-12040.41DNA-directed RNA polymerase subunit n=3 Tax=Phytop... [more]
A0A484E7B9_BRELC1.180e-12039.52DNA-directed RNA polymerase subunit n=1 Tax=Bremia... [more]
K8YRY5_NANGC1.540e-12044.20DNA-directed RNA polymerase subunit n=2 Tax=Monodo... [more]
H3H1S7_PHYRM1.340e-11940.22DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
A0A2D4BVH8_PYTIN2.670e-11940.16DNA-directed RNA polymerase subunit n=1 Tax=Pythiu... [more]
A0A8K1FLQ6_PYTOL3.900e-11640.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XPF2_9STRA4.200e-11639.97DNA-directed RNA polymerase subunit n=1 Tax=Pythiu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 372..610
e-value: 5.3E-21
score: 85.8
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 499..610
e-value: 7.7E-27
score: 94.5
NoneNo IPR availableGENE3D3.30.1490.180RNA polymerase iicoord: 531..599
e-value: 4.8E-20
score: 73.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 261..329
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 9..610
IPR044893RNA polymerase Rpb1, clamp domain superfamilyGENE3D4.10.860.120RNA polymerase II, clamp domaincoord: 3..127
e-value: 1.9E-31
score: 110.5
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 10..226
e-value: 3.0E-24
score: 85.9
IPR045867DNA-directed RNA polymerase, subunit beta-primePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 14..610

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1043contigP-wetherbeei_contig1043:215..3433 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1043.1.6mRNA_P-wetherbeei_contig1043.1.6Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1043 215..3433 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1043.1.6 ID=prot_P-wetherbeei_contig1043.1.6|Name=mRNA_P-wetherbeei_contig1043.1.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=610bp
MSHDRTVVRHSVERVHFGFLHDDEIRSMSVKQITSPTTFDALNNPLPGGL
YDRALGPTEMFVPCETCGQDQRHCPGHLGHIELAVSVYHPMLFPILYKLL
RSKCFSCHRLRLAAFKARVCCVQLMLCDAGDAIAARNLADELNAALTPED
DAADVEAAGAGRIGSVEPVLRTHEKRLRALAGNGRGCQGHDRTFRELVDD
LIKTMASVAKCENCGYQSPKVRKDGHSKLFQRPLTVKGRGTNRGLGGRGV
LSAMQTMWRRELNGVGADDSEPEQQDDDCGSDEACGGGGGDAADSAGDRS
DHGREEEEGRGGRGGGGGQKEAGKEEFLPPKEVELQMKLLWEKEWALLSL
VFGSAWRAGPKQPLGVAAGGYRLFFVRLLAVPPPRFRPPMAVGGMVAEHP
QNVHLSRVLALNERLLNTERQRQQRGGSGSDSAGLLAGAELQRALGLWIE
LQDAVNVFMDSSKERRGAGTASIIQQPGLRQARLVLEKKEGLFRKHMMGK
RVNYACRSVISPDPYVGTSEIGIPLRFARVLTYPQPVAPWNVARMRGLVE
AGAEVHPGANYVEDAAGRLTDLGRLPRARRQALAARLLSSPGQKVWRHLD
DGDIMLVNRQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006592RNA_pol_N
IPR000722RNA_pol_asu
IPR044893RNA_pol_Rpb1_clamp_domain
IPR007080RNA_pol_Rpb1_1
IPR045867DNA-dir_RpoC_beta_prime