mRNA_P-wetherbeei_contig10428.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10428.1.1
Unique NamemRNA_P-wetherbeei_contig10428.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: D8LN10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN10_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.960e-22
Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 3
Query:  246 VGASSSDAAGNGEAGSGRPRL-PLSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNYQTDIDAAPGTRLTAVEAQFRSRWVSTIHLTLGLMGLVARQPPTTQADFALESAVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMRAARR 896
            +GA S D +  G     RP+  PL  L + ++    E+ V N+GRPL  ++   V+ + + L SGY  E + LEL         PG  LT VE ++R++W+S +   +  +  +  Q P +  +F ++S V VV+ GR                                  +FVK D+ L T G++GG VATE + ++P  +PLSQ+VLL +RA ++
Sbjct:    1 MGARSGDGSYRGGPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQVDVVMRGRQT----------------------------NDEQTFVKFDKALATGGVAGG-VATECIAISPQMVPLSQLVLLGIRALQK 189          
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: A0A6H5KRS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 8.790e-21
Identity = 68/223 (30.49%), Postives = 110/223 (49.33%), Query Frame = 3
Query:  237 VLQVGASSSDAAGNGEAGSGRPRL-PLSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNYQTDIDAAPGTRLTAVEAQFRSRWVSTIHLTLGLMGLVARQPPTTQADFALES--AVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMRAARR 896
            +L++GA S D    G     RP+  PL  L + ++    E+ V N+GRPL  ++   V+ + + L SGY  E + LEL         PG  LT VE ++R++W+S +   +  +  +  Q P +  +F ++S  +V VV+ GR                                  +FVK D+ L T G++GG VATE + ++P  +PLSQ+VLL +RA ++
Sbjct:  112 LLRMGAGSGDERYQGAPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVELSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQASVDVVMRGRQT----------------------------NDEQTFVKFDKALATGGVAGG-VATECIAISPQMVPLSQLVLLGIRALQK 305          
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: A0A2R6W5D4_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W5D4_MARPO)

HSP 1 Score: 102 bits (253), Expect = 9.160e-21
Identity = 75/209 (35.89%), Postives = 104/209 (49.76%), Query Frame = 3
Query:  312 LSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNY------QTDIDAAPGTRLTAVEAQFRSRWVSTIHLTLGLMGLVARQPP-----TTQADFALESAVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMRAARRTTS 905
            L+ + + +  C+ E+ V N GRP G AL   V AA    L+G+  + + L+L Y      ++ ++   G RLTA E Q+RS+W+ TI+ TL  + +V  Q       T Q D  L S V  VVEG+            GD+                   SFVK DRGL T+G SGG +A +R  VAP  IPL+Q+VLLTM+      S
Sbjct:   85 LADICRCLQHCFFEICVENRGRPAGTALHEFVGAAVAAYLAGHTRDRLSLQLAYGDNGMEESKLETE-GFRLTASEEQYRSQWLDTIYTTLQFLKVVDNQASRSSLVTAQTDSHLFSIVRRVVEGQQS----------GDE------------------QSFVKFDRGLATKGASGGAIA-QREAVAPQFIPLTQLVLLTMKVVNEDIS 263          
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: A0A0G4F2M6_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F2M6_VITBC)

HSP 1 Score: 91.7 bits (226), Expect = 1.740e-17
Identity = 70/207 (33.82%), Postives = 98/207 (47.34%), Query Frame = 3
Query:  300 PRLPLSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNYQTD----IDAAPGTRLTAVEAQFRSRWVSTIHLTLGLMGLVARQ-------PPTTQADFALESAVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMRA 887
            P   L++  + ++  YRE  + N GR L  AL   V+   D  + G     VQL+L  Q +     +  P  RLT  + + R+RW+  + LTL  +G+V+ +       P T+ AD AL+  V   V+G+            GD                    S+V  DR L TRG + GGVATE V V P  IPLSQ+VLLTM+A
Sbjct:   38 PDFDLNKSARSLNLYYREACLHNRGRSLAEALGDFVEECVDVFIYGG-CSPVQLQLETQVEGEIHCERNPLERLTQDDKEARARWIRCVWLTLRTLGVVSVRRDSEVEGPSTSAADAALQGLVSTTVKGQQT----------GD------------------RQSYVPFDRSLATRG-NQGGVATENVAVPPQVIPLSQLVLLTMKA 214          
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: A0A388LBA0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LBA0_CHABU)

HSP 1 Score: 85.5 bits (210), Expect = 1.120e-14
Identity = 68/214 (31.78%), Postives = 104/214 (48.60%), Query Frame = 3
Query:  291 SGRPRLPLSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNYQTD-IDA----APGTRLTAVEAQFRSRWVSTIHLTLGLMGLVARQPPTTQADFA---LESAVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMRAARRTTSK 908
            SGR    L RLV++    + EV V N GRP G AL     A ++    G+  + + LEL + +  +D     A G RLT+ E ++RS+W+ TI++TL +M +V  +  +   D     L + V  V+EG+            G++                   + VK DR L T G SGG  A ++V+ AP  +P+SQIVLLTM+      ++
Sbjct:  132 SGRSLPQLCRLVERA---FFEVCVQNLGRPAGMALYDFTVATSEAFFKGFTRDQLALELRFGSHHMDGYGVQAAGYRLTSSEERYRSQWIDTIYVTLHMMKVVEPEEASNTPDMGDEWLRNIVHRVLEGQRT----------GEE------------------QTAVKFDRALATAGASGGAAAQKKVI-APQWVPVSQIVLLTMKVVAEAQAR 313          
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: A0A2K1KSW5_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KSW5_PHYPA)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-14
Identity = 60/203 (29.56%), Postives = 106/203 (52.22%), Query Frame = 3
Query:  294 GRPRLPLSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNY------QTDIDAAPGTRLTAVEAQFRSRWVSTIHLTLGLMGLVARQPPTTQADFALESAVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMR 884
            G  ++ L  + +++  C+ E+ V N GR  G AL   V AA D  ++GY  + + L++ +      +  ++ A G RLTA E  +R++W++TI++TL ++ +   +     A F  E+  +V +  R+     +     G++                   S VK DRGL T+G SGG V+ E++V++P  +P++QIVLLT +
Sbjct:   94 GWSQISLDDVCRRLHLCFFEICVQNLGRSAGQALHEFVCAAVDAFMAGYTFDRLNLQIVHGSGGMEEFKMENA-GYRLTASEEYYRTQWLTTIYVTLQMLKVADNE---ASASFVTENLQLVQIIHRTLEGQRH-----GEE------------------QSLVKFDRGLATKGASGGAVS-EKLVISPQWVPVTQIVLLTWK 268          
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: A0A1Y1HTH8_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTH8_KLENI)

HSP 1 Score: 81.3 bits (199), Expect = 1.110e-13
Identity = 67/200 (33.50%), Postives = 98/200 (49.00%), Query Frame = 3
Query:  312 LSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNY------QTDIDAAPGTRLTAVEAQFRSRWVSTIHLTLGLMGLVA---RQPPTTQADFALESAVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMR 884
            L  + + ++  + EV V N GRP  AAL   V A  +  + G   + V ++L Y      + + D A G RLT  E ++RS+W+  I+ TL L+   +   RQ P TQ D +L + +  V+EG+            G++                   S VK DR L T G SGG  + ER VVAP  IP++Q+VLLTM+
Sbjct:   73 LDDVCQDIEKAFSEVCVENLGRPAAAALFDFVAATVEAYMLGASRDKVTIQLQYGSKEAYRIERDVA-GYRLTGSEERYRSQWLDVIYTTLQLLKQGSEEWRQQPATQ-DESLIAIIHRVLEGQRT----------GEE------------------QSLVKFDRALSTAGASGGATS-ERRVVAPQWIPVTQLVLLTMK 241          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LN10_ECTSI2.960e-2230.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRS9_9PHAE8.790e-2130.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R6W5D4_MARPO9.160e-2135.89Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A0G4F2M6_VITBC1.740e-1733.82Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A388LBA0_CHABU1.120e-1431.78Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A2K1KSW5_PHYPA1.120e-1429.56Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A1Y1HTH8_KLENI1.110e-1333.50Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10428contigP-wetherbeei_contig10428:408..1933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LN10
Model size1481
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue3.36e-24
EggNOG OGs2EQ6P@1|root,2ST8S@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_000950.1
Cds size846
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185868.8554225-UTR-P-wetherbeei_contig10428:407..4751683185868.8554225-UTR-P-wetherbeei_contig10428:407..475Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10428 408..475 +
1683185868.870786-UTR-P-wetherbeei_contig10428:1321..16831683185868.870786-UTR-P-wetherbeei_contig10428:1321..1683Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10428 1322..1683 +
1683185868.8781679-UTR-P-wetherbeei_contig10428:1728..19331683185868.8781679-UTR-P-wetherbeei_contig10428:1728..1933Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10428 1729..1933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185868.863701-CDS-P-wetherbeei_contig10428:475..13211683185868.863701-CDS-P-wetherbeei_contig10428:475..1321Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10428 476..1321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10428.1.1prot_P-wetherbeei_contig10428.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10428 476..1321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10428.1.1

>prot_P-wetherbeei_contig10428.1.1 ID=prot_P-wetherbeei_contig10428.1.1|Name=mRNA_P-wetherbeei_contig10428.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=282bp
MSLLLFWLALACFAICLQSFLAPSAFNAMRVARQRTWIKSMHPRRKQVAQ
RGHGCVVLQVGASSSDAAGNGEAGSGRPRLPLSRLVKQVDSCYREVVVVN
EGRPLGAALAGLVDAATDTLLSGYPLETVQLELNYQTDIDAAPGTRLTAV
EAQFRSRWVSTIHLTLGLMGLVARQPPTTQADFALESAVIVVVEGRSRAA
GAYPSGSGGDDGSSDGSGSGGTSDSGSRSDSFVKMDRGLVTRGLSGGGVA
TERVVVAPDCIPLSQIVLLTMRAARRTTSKT*
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mRNA from alignment at P-wetherbeei_contig10428:408..1933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10428.1.1 ID=mRNA_P-wetherbeei_contig10428.1.1|Name=mRNA_P-wetherbeei_contig10428.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1526bp|location=Sequence derived from alignment at P-wetherbeei_contig10428:408..1933+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCTAGGAGGACAGAGATATCCATTACTGTATAGGATAGGCTTCAGGA GGAGCCGCAGGTTCCAAAATGAGCTTGCTACTTTTTTGGCTTGCCTTGGC CTGCTTTGCCATTTGCTTGCAGAGCTTTTTAGCTCCATCGGCGTTCAACG CTATGCGTGTGGCAAGGCAAAGAACGTGGATAAAATCGATGCATCCCCGA CGTAAGCAGGTGGCGCAGAGAGGTCACGGTTGTGTCGTGTTGCAAGTCGG AGCCAGCAGCAGCGACGCCGCAGGAAACGGAGAAGCTGGCAGTGGAAGGC CACGGCTACCCCTCAGCCGTCTTGTAAAGCAAGTCGACTCCTGCTACCGC GAAGTGGTTGTCGTGAACGAGGGTCGGCCGCTGGGTGCTGCCCTTGCCGG TCTCGTTGATGCCGCGACGGATACCCTCCTTTCCGGCTACCCGCTGGAGA CCGTGCAGCTCGAGCTCAACTACCAGACGGACATCGACGCGGCGCCGGGA ACGCGCCTCACCGCTGTTGAGGCGCAGTTCCGGTCACGTTGGGTCTCGAC GATCCACTTGACGCTCGGCCTCATGGGGCTCGTGGCCCGCCAGCCGCCGA CTACCCAAGCAGACTTCGCACTAGAGAGCGCCGTCATCGTCGTCGTCGAA GGCCGCTCCCGCGCTGCTGGCGCGTATCCCAGCGGCAGCGGCGGCGACGA CGGCAGCAGTGATGGCAGCGGGAGCGGCGGCACGAGCGACAGCGGCAGCC GCAGCGATTCCTTCGTCAAGATGGATCGGGGGCTCGTGACGCGCGGTCTC AGTGGCGGCGGGGTGGCGACGGAGCGCGTCGTGGTGGCGCCCGACTGCAT CCCTCTGTCGCAGATCGTGCTTCTGACGATGCGCGCGGCACGGCGCACAA CATCGAAAACCTAAGGAAAGTAGAGTAACCACTTCACCATTATTGATTTT TTAACTCTCTGGGTGTGGCGCATAGATCGAGTGAGACCTTACATTCGGGG ATGGAATGTCGTAAATTTGTGCATATAGCAGTTTTCCATGTTTGACGTGC TTTCAGGTCCTTGACCTGGCAAAGCAATACGAGGAACGCGAAGAACGGTA TGTTTTGCCATGTTGACATGGTCGAGATGCCGACACCACAGACTCGAGAA AATATAGTTCGCCCAGAGGTCTTCGTCTTGTTATCGTTAAGCCCGCTGGC AGCCGACCCCGGGCTCTAAAACAGGGCCGTATTTGCAGCGGCGAACGCGA CCAGCGCCGCCAGCAGAACGGAAACCGCCGCCGCCGCCCTCGGTGGCGCG GCGGCGAGCGGCGAGTTGTAGTCGTACAGCAGGCACTGGTCGTCGTTCTC GCGCTTGTTTGGCGCCGGCGTGCACGTCTGCAAGGCGCTTACAGAAACGG TTTTAGGGGGCGGTTGTGGTTTTGGCATTTCAGAAGAGGCTGTCCCTGAC GAAGGCAATGTTGCTTGGCGAGAAGGCGATATTCAACCCGAATCTTCAGT CTGCGACACATTAAAATCATTCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10428:408..1933+

>mRNA_P-wetherbeei_contig10428.1.1 ID=mRNA_P-wetherbeei_contig10428.1.1|Name=mRNA_P-wetherbeei_contig10428.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig10428:408..1933+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTTGCTACTTTTTTGGCTTGCCTTGGCCTGCTTTGCCATTTGCTT
GCAGAGCTTTTTAGCTCCATCGGCGTTCAACGCTATGCGTGTGGCAAGGC
AAAGAACGTGGATAAAATCGATGCATCCCCGACGTAAGCAGGTGGCGCAG
AGAGGTCACGGTTGTGTCGTGTTGCAAGTCGGAGCCAGCAGCAGCGACGC
CGCAGGAAACGGAGAAGCTGGCAGTGGAAGGCCACGGCTACCCCTCAGCC
GTCTTGTAAAGCAAGTCGACTCCTGCTACCGCGAAGTGGTTGTCGTGAAC
GAGGGTCGGCCGCTGGGTGCTGCCCTTGCCGGTCTCGTTGATGCCGCGAC
GGATACCCTCCTTTCCGGCTACCCGCTGGAGACCGTGCAGCTCGAGCTCA
ACTACCAGACGGACATCGACGCGGCGCCGGGAACGCGCCTCACCGCTGTT
GAGGCGCAGTTCCGGTCACGTTGGGTCTCGACGATCCACTTGACGCTCGG
CCTCATGGGGCTCGTGGCCCGCCAGCCGCCGACTACCCAAGCAGACTTCG
CACTAGAGAGCGCCGTCATCGTCGTCGTCGAAGGCCGCTCCCGCGCTGCT
GGCGCGTATCCCAGCGGCAGCGGCGGCGACGACGGCAGCAGTGATGGCAG
CGGGAGCGGCGGCACGAGCGACAGCGGCAGCCGCAGCGATTCCTTCGTCA
AGATGGATCGGGGGCTCGTGACGCGCGGTCTCAGTGGCGGCGGGGTGGCG
ACGGAGCGCGTCGTGGTGGCGCCCGACTGCATCCCTCTGTCGCAGATCGT
GCTTCTGACGATGCGCGCGGCACGGCGCACAACATCGAAAACCTAA
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