mRNA_P-wetherbeei_contig10428.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: D8LN10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN10_ECTSI) HSP 1 Score: 104 bits (259), Expect = 2.960e-22 Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 3 Query: 246 VGASSSDAAGNGEAGSGRPRL-PLSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNYQTDIDAAPGTRLTAVEAQFRSRWVSTIHLTLGLMGLVARQPPTTQADFALESAVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMRAARR 896 +GA S D + G RP+ PL L + ++ E+ V N+GRPL ++ V+ + + L SGY E + LEL PG LT VE ++R++W+S + + + + Q P + +F ++S V VV+ GR +FVK D+ L T G++GG VATE + ++P +PLSQ+VLL +RA ++ Sbjct: 1 MGARSGDGSYRGGPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQVDVVMRGRQT----------------------------NDEQTFVKFDKALATGGVAGG-VATECIAISPQMVPLSQLVLLGIRALQK 189
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: A0A6H5KRS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS9_9PHAE) HSP 1 Score: 103 bits (256), Expect = 8.790e-21 Identity = 68/223 (30.49%), Postives = 110/223 (49.33%), Query Frame = 3 Query: 237 VLQVGASSSDAAGNGEAGSGRPRL-PLSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNYQTDIDAAPGTRLTAVEAQFRSRWVSTIHLTLGLMGLVARQPPTTQADFALES--AVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMRAARR 896 +L++GA S D G RP+ PL L + ++ E+ V N+GRPL ++ V+ + + L SGY E + LEL PG LT VE ++R++W+S + + + + Q P + +F ++S +V VV+ GR +FVK D+ L T G++GG VATE + ++P +PLSQ+VLL +RA ++ Sbjct: 112 LLRMGAGSGDERYQGAPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVELSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQASVDVVMRGRQT----------------------------NDEQTFVKFDKALATGGVAGG-VATECIAISPQMVPLSQLVLLGIRALQK 305
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: A0A2R6W5D4_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W5D4_MARPO) HSP 1 Score: 102 bits (253), Expect = 9.160e-21 Identity = 75/209 (35.89%), Postives = 104/209 (49.76%), Query Frame = 3 Query: 312 LSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNY------QTDIDAAPGTRLTAVEAQFRSRWVSTIHLTLGLMGLVARQPP-----TTQADFALESAVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMRAARRTTS 905 L+ + + + C+ E+ V N GRP G AL V AA L+G+ + + L+L Y ++ ++ G RLTA E Q+RS+W+ TI+ TL + +V Q T Q D L S V VVEG+ GD+ SFVK DRGL T+G SGG +A +R VAP IPL+Q+VLLTM+ S Sbjct: 85 LADICRCLQHCFFEICVENRGRPAGTALHEFVGAAVAAYLAGHTRDRLSLQLAYGDNGMEESKLETE-GFRLTASEEQYRSQWLDTIYTTLQFLKVVDNQASRSSLVTAQTDSHLFSIVRRVVEGQQS----------GDE------------------QSFVKFDRGLATKGASGGAIA-QREAVAPQFIPLTQLVLLTMKVVNEDIS 263
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: A0A0G4F2M6_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F2M6_VITBC) HSP 1 Score: 91.7 bits (226), Expect = 1.740e-17 Identity = 70/207 (33.82%), Postives = 98/207 (47.34%), Query Frame = 3 Query: 300 PRLPLSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNYQTD----IDAAPGTRLTAVEAQFRSRWVSTIHLTLGLMGLVARQ-------PPTTQADFALESAVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMRA 887 P L++ + ++ YRE + N GR L AL V+ D + G VQL+L Q + + P RLT + + R+RW+ + LTL +G+V+ + P T+ AD AL+ V V+G+ GD S+V DR L TRG + GGVATE V V P IPLSQ+VLLTM+A Sbjct: 38 PDFDLNKSARSLNLYYREACLHNRGRSLAEALGDFVEECVDVFIYGG-CSPVQLQLETQVEGEIHCERNPLERLTQDDKEARARWIRCVWLTLRTLGVVSVRRDSEVEGPSTSAADAALQGLVSTTVKGQQT----------GD------------------RQSYVPFDRSLATRG-NQGGVATENVAVPPQVIPLSQLVLLTMKA 214
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: A0A388LBA0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LBA0_CHABU) HSP 1 Score: 85.5 bits (210), Expect = 1.120e-14 Identity = 68/214 (31.78%), Postives = 104/214 (48.60%), Query Frame = 3 Query: 291 SGRPRLPLSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNYQTD-IDA----APGTRLTAVEAQFRSRWVSTIHLTLGLMGLVARQPPTTQADFA---LESAVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMRAARRTTSK 908 SGR L RLV++ + EV V N GRP G AL A ++ G+ + + LEL + + +D A G RLT+ E ++RS+W+ TI++TL +M +V + + D L + V V+EG+ G++ + VK DR L T G SGG A ++V+ AP +P+SQIVLLTM+ ++ Sbjct: 132 SGRSLPQLCRLVERA---FFEVCVQNLGRPAGMALYDFTVATSEAFFKGFTRDQLALELRFGSHHMDGYGVQAAGYRLTSSEERYRSQWIDTIYVTLHMMKVVEPEEASNTPDMGDEWLRNIVHRVLEGQRT----------GEE------------------QTAVKFDRALATAGASGGAAAQKKVI-APQWVPVSQIVLLTMKVVAEAQAR 313
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: A0A2K1KSW5_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KSW5_PHYPA) HSP 1 Score: 84.7 bits (208), Expect = 1.120e-14 Identity = 60/203 (29.56%), Postives = 106/203 (52.22%), Query Frame = 3 Query: 294 GRPRLPLSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNY------QTDIDAAPGTRLTAVEAQFRSRWVSTIHLTLGLMGLVARQPPTTQADFALESAVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMR 884 G ++ L + +++ C+ E+ V N GR G AL V AA D ++GY + + L++ + + ++ A G RLTA E +R++W++TI++TL ++ + + A F E+ +V + R+ + G++ S VK DRGL T+G SGG V+ E++V++P +P++QIVLLT + Sbjct: 94 GWSQISLDDVCRRLHLCFFEICVQNLGRSAGQALHEFVCAAVDAFMAGYTFDRLNLQIVHGSGGMEEFKMENA-GYRLTASEEYYRTQWLTTIYVTLQMLKVADNE---ASASFVTENLQLVQIIHRTLEGQRH-----GEE------------------QSLVKFDRGLATKGASGGAVS-EKLVISPQWVPVTQIVLLTWK 268
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Match: A0A1Y1HTH8_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTH8_KLENI) HSP 1 Score: 81.3 bits (199), Expect = 1.110e-13 Identity = 67/200 (33.50%), Postives = 98/200 (49.00%), Query Frame = 3 Query: 312 LSRLVKQVDSCYREVVVVNEGRPLGAALAGLVDAATDTLLSGYPLETVQLELNY------QTDIDAAPGTRLTAVEAQFRSRWVSTIHLTLGLMGLVA---RQPPTTQADFALESAVIVVVEGRSRAAGAYPSGSGGDDGSXXXXXXXXXXXXXXXXDSFVKMDRGLVTRGLSGGGVATERVVVAPDCIPLSQIVLLTMR 884 L + + ++ + EV V N GRP AAL V A + + G + V ++L Y + + D A G RLT E ++RS+W+ I+ TL L+ + RQ P TQ D +L + + V+EG+ G++ S VK DR L T G SGG + ER VVAP IP++Q+VLLTM+ Sbjct: 73 LDDVCQDIEKAFSEVCVENLGRPAAAALFDFVAATVEAYMLGASRDKVTIQLQYGSKEAYRIERDVA-GYRLTGSEERYRSQWLDVIYTTLQLLKQGSEEWRQQPATQ-DESLIAIIHRVLEGQRT----------GEE------------------QSLVKFDRALSTAGASGGATS-ERRVVAPQWIPVTQLVLLTMK 241 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10428.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig10428.1.1 >prot_P-wetherbeei_contig10428.1.1 ID=prot_P-wetherbeei_contig10428.1.1|Name=mRNA_P-wetherbeei_contig10428.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=282bp MSLLLFWLALACFAICLQSFLAPSAFNAMRVARQRTWIKSMHPRRKQVAQback to top mRNA from alignment at P-wetherbeei_contig10428:408..1933+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig10428.1.1 ID=mRNA_P-wetherbeei_contig10428.1.1|Name=mRNA_P-wetherbeei_contig10428.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1526bp|location=Sequence derived from alignment at P-wetherbeei_contig10428:408..1933+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig10428:408..1933+ >mRNA_P-wetherbeei_contig10428.1.1 ID=mRNA_P-wetherbeei_contig10428.1.1|Name=mRNA_P-wetherbeei_contig10428.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig10428:408..1933+ (Phaeothamnion wetherbeei SAG_119_79)back to top |