mRNA_P-wetherbeei_contig10425.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10425.1.1
Unique NamemRNA_P-wetherbeei_contig10425.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10425.1.1 vs. uniprot
Match: UPI001ED89AAD (nucleoporin Nup43 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED89AAD)

HSP 1 Score: 50.8 bits (120), Expect = 2.600e-5
Identity = 29/85 (34.12%), Postives = 42/85 (49.41%), Query Frame = 1 
Query:   19 LCLTNRHLAPEVFAAGGEDGRIVAWDIRRAT-PLHVLTAPELPPDDAASLPSVATGVTGIAFQPQTPNFMFSSTASGLLYIWNTE 270
            +C+T       V   GGEDG + AWD+R++  P+ +L A    PD           V  + F P  P  +F+ +ASG L+ WNT 
Sbjct:  219 MCITQHPTQRHVVLVGGEDGSLTAWDLRQSRFPVTLLNAH---PD----------AVNEVKFHPMQPEHLFTCSASGELWHWNTS 290
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10425.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001ED89AAD2.600e-534.12nucleoporin Nup43 n=1 Tax=Ischnura elegans TaxID=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10425contigP-wetherbeei_contig10425:18..287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog121225.PHUM174250-PA
Preferred nameNUP43
PFAMsWD40
Model size270
Max annot lvl33208|Metazoa
KEGG koko:K14305
KEGG TC1.l.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005694,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016032,GO:0031080,GO:0031503,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0098687
Exons1
Evalue5.14e-05
EggNOG OGsKOG4714@1|root,KOG4714@2759|Eukaryota,38BWJ@33154|Opisthokonta,3BATR@33208|Metazoa,3CY83@33213|Bilateria,41VEH@6656|Arthropoda,3SJJN@50557|Insecta,3EBK9@33342|Paraneoptera
DescriptionWD40 repeats
Cds size270
COG categoryY
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185868.774008-CDS-P-wetherbeei_contig10425:17..2871683185868.774008-CDS-P-wetherbeei_contig10425:17..287Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10425 18..287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10425.1.1prot_P-wetherbeei_contig10425.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10425 18..287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10425.1.1

>prot_P-wetherbeei_contig10425.1.1 ID=prot_P-wetherbeei_contig10425.1.1|Name=mRNA_P-wetherbeei_contig10425.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MSPAPYLCLTNRHLAPEVFAAGGEDGRIVAWDIRRATPLHVLTAPELPPD
DAASLPSVATGVTGIAFQPQTPNFMFSSTASGLLYIWNTE
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mRNA from alignment at P-wetherbeei_contig10425:18..287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10425.1.1 ID=mRNA_P-wetherbeei_contig10425.1.1|Name=mRNA_P-wetherbeei_contig10425.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig10425:18..287+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCCCCGCCCCGTACCTTTGTCTGACGAACCGACACCTGGCGCCCGA
GGTGTTTGCGGCCGGGGGTGAAGACGGCCGCATCGTGGCTTGGGACATTC
GCCGGGCGACCCCACTGCACGTGCTGACCGCTCCTGAACTTCCACCGGAC
GACGCGGCGTCGCTGCCGTCCGTGGCGACAGGCGTGACTGGGATCGCCTT
CCAGCCGCAGACACCAAACTTCATGTTTTCGAGCACGGCATCGGGGCTCT
TGTACATCTGGAATACAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10425:18..287+

>mRNA_P-wetherbeei_contig10425.1.1 ID=mRNA_P-wetherbeei_contig10425.1.1|Name=mRNA_P-wetherbeei_contig10425.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig10425:18..287+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCCCCGCCCCGTACCTTTGTCTGACGAACCGACACCTGGCGCCCGA
GGTGTTTGCGGCCGGGGGTGAAGACGGCCGCATCGTGGCTTGGGACATTC
GCCGGGCGACCCCACTGCACGTGCTGACCGCTCCTGAACTTCCACCGGAC
GACGCGGCGTCGCTGCCGTCCGTGGCGACAGGCGTGACTGGGATCGCCTT
CCAGCCGCAGACACCAAACTTCATGTTTTCGAGCACGGCATCGGGGCTCT
TGTACATCTGGAATACAGAG
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