prot_P-wetherbeei_contig10425.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig10425.1.1
Unique Nameprot_P-wetherbeei_contig10425.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length90
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig10425.1.1 vs. uniprot
Match: UPI001ED89AAD (nucleoporin Nup43 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED89AAD)

HSP 1 Score: 50.8 bits (120), Expect = 2.600e-5
Identity = 29/85 (34.12%), Postives = 42/85 (49.41%), Query Frame = 0 
Query:    7 LCLTNRHLAPEVFAAGGEDGRIVAWDIRRAT-PLHVLTAPELPPDDAASLPSVATGVTGIAFQPQTPNFMFSSTASGLLYIWNTE 90
            +C+T       V   GGEDG + AWD+R++  P+ +L A    PD           V  + F P  P  +F+ +ASG L+ WNT 
Sbjct:  219 MCITQHPTQRHVVLVGGEDGSLTAWDLRQSRFPVTLLNAH---PD----------AVNEVKFHPMQPEHLFTCSASGELWHWNTS 290
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10425.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001ED89AAD2.600e-534.12nucleoporin Nup43 n=1 Tax=Ischnura elegans TaxID=1... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 3..90
e-value: 3.6E-10
score: 41.6
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 16..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10425contigP-wetherbeei_contig10425:18..287 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10425.1.1mRNA_P-wetherbeei_contig10425.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig10425 18..287 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig10425.1.1 ID=prot_P-wetherbeei_contig10425.1.1|Name=mRNA_P-wetherbeei_contig10425.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MSPAPYLCLTNRHLAPEVFAAGGEDGRIVAWDIRRATPLHVLTAPELPPD
DAASLPSVATGVTGIAFQPQTPNFMFSSTASGLLYIWNTE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf