mRNA_P-wetherbeei_contig10356.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10356.1.1
Unique NamemRNA_P-wetherbeei_contig10356.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10356.1.1 vs. uniprot
Match: D7G928_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G928_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 7.530e-48
Identity = 98/195 (50.26%), Postives = 127/195 (65.13%), Query Frame = 2
Query:  323 KGLATTRFHKGFQRRPYRKILQDIDRRKHEELKDEARAASSEHRRRRLEALDKRNQFNIITGEHSEALLRATSPSRGVEALARRSENLSVLAAREEYVLLRDSLYRFHAPAWTGEGHDARQGTLRRQGLLAAASSSVLGVGRSEMQSFGVEDQFSKSLYDERNGCRFGGLPEACEPGCYTPRKLSAAASAARLAR 907
            KGL+TTRFH+GFQRR    I QD  R + E LK        E RR+RL +LDKRN FN+ITG+  +A  R T+P   V+   R + +LS +A R EY+LLRDS Y+FHAPAW+G+ HD RQ  L+R+GL     S++LGVG +++ S G  D FSKS+YD    C   GL E C PG YTPRK+++A  AA  +R
Sbjct:    4 KGLSTTRFHQGFQRRKQSNIRQDESRLQREALKQHMSVLHLERRRQRLGSLDKRNGFNLITGQF-DANRRCTTPFH-VQPRTRETGSLSEVAERAEYLLLRDSEYKFHAPAWSGKNHDERQDLLQREGLNKPKKSTLLGVGTADLASAGANDMFSKSIYDPAKTCAVEGLVETCFPGRYTPRKVTSARRAAAASR 196          
BLAST of mRNA_P-wetherbeei_contig10356.1.1 vs. uniprot
Match: A0A8J2X5L6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5L6_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.680e-30
Identity = 80/189 (42.33%), Postives = 111/189 (58.73%), Query Frame = 2
Query:  320 EKGLATTRFHKGFQRRPYRKILQDIDRRKHEELKDEARAASSEHRRRRLEALDKRNQFNIITGEHSEALLRATSPSRGVEALARRSENLSVLAAREEYVLLRDSLYRFHAPAWTGEGHDARQGTLRRQGLLAAASSSVLGVGRSEMQSFGVEDQFSKSLYDERNGCRFGGLPEACEPGCYTPRKLSAAA 886
            E+GL  TRF+KGF RR   KI QD++R++HE L+ E +  + + R  RL  +   N F++I+GE+  A +R   P R      R S+ L    A+   + +R+S YR +  A TG+ HD RQ  L  +G      +SVLG+GR+E  S+GVEDQF+KS Y  +    FG L E  EPG YTPRKL  +A
Sbjct:   79 EQGLEYTRFNKGFDRRNQSKIGQDVERKEHERLQAEKKVVTDQLRTDRLVEIKDYNGFDVISGEYDPAKIRGAHP-RARHLSDRPSKEL----AKTGEITIRNSCYRMYTAAPTGDKHDYRQHQLVSEGQSKPKFTSVLGIGRAEEPSYGVEDQFAKSQYGGKVHTDFG-LCEVREPGRYTPRKLGGSA 261          
BLAST of mRNA_P-wetherbeei_contig10356.1.1 vs. uniprot
Match: A0A7S3NGF4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGF4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.300e-20
Identity = 77/205 (37.56%), Postives = 104/205 (50.73%), Query Frame = 2
Query:  266 SSVNGGEVVTVRPKYIPIEKGLATTRFHKGFQRRPYRKILQDIDRRKHEELKDEARAASSEHRRRRLEALDKRNQFNIITGEHSEALLRATSPSRGVEALARRSENLSVLAAREEYVLLRDSLYRFHAPAWTGEG-HDARQGTLRRQGLLAAASSSVLGVGRSEMQSFGVEDQFSKSLYDERNGCRFGGLPEACEPGCYTPRKLS 877
            SS++G   +T   K    EKGL  T+F  GF+RR  + I    +R++ E++ +  R   S+ RR +L      N++N ITG + +   +A     GV+ L   S+  S    R   + +R+S YRF+ P   G   H  RQ  L   GL     SS+LGVGR E  SFGVEDQFSKS Y  R      GL E  +PG Y P   S
Sbjct:   41 SSIDGKSYLTTEEKRN--EKGLRATKFRLGFERR--QNIEPYTERKEQEKVLEGRRQVRSQIRREQLLKNSDINRYNPITGAY-DPFKKAKDERGGVKRL---SDKPSEERIRAGEIYVRNSKYRFYTPTQYGSSDHVKRQELLLSGGLSKPKFSSILGVGRDEAPSFGVEDQFSKSCYQPRQSS-LHGLVEKSKPGAYPPPHTS 236          
BLAST of mRNA_P-wetherbeei_contig10356.1.1 vs. uniprot
Match: A0A1W0A503_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A503_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.930e-12
Identity = 59/199 (29.65%), Postives = 94/199 (47.24%), Query Frame = 2
Query:  203 HAYREWEYLRHNVNGGHAGAGSSVNGGEVVTVRPKYIPIEKGLATTRFHKGFQRRPYRKILQDIDRRKHEELKDEARAASSEHRRRRLEALDKRNQFNIITGEHSEALLRATSPSRGVEALARRSENLSVLAAREEYVLLRDSLYRFHAPAWTGEGHDARQGTLRRQGLLAAASSSVLGVGRSEMQSFGVEDQFSKSLY 799
            H ++ W YL+   N  H          +++       P+ +   TT+F  GF RR    I  D +R +HE  K+ A ++++  R  RL  L     +NI+TG  S        P R      ++S++L      E  + LR+S  RF+   W+   +D R   L ++GL     SS++G+GR+E+ SFG  D   +SLY
Sbjct:   33 HEFKVWNYLQDPRNAPH----------DILD------PMLQSTRTTKFTPGFYRRTRTAIASDRERLEHEASKERAHSSNAVQRHGRLSYLSSSYDYNIVTGTPSTVKEVRLPPCRRYLG-DKQSDHL----VHEGTIQLRESQNRFYGNIWS---NDFRTNMLVKEGLHGPKHSSIIGIGRNELPSFGTSDGLDRSLY 207          
BLAST of mRNA_P-wetherbeei_contig10356.1.1 vs. uniprot
Match: A0A7S4DG49_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG49_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 7.420e-10
Identity = 39/88 (44.32%), Postives = 50/88 (56.82%), Query Frame = 2
Query:  602 REEYVLLRDSLYRFHAPAWTGEGHDARQGTLRRQGLLAAASSSVLGVGRSEMQSFGVEDQFSKSLYDERNGCRFGGLPEACEPGCYTP 865
            R +  LL  S  RFH    +GE HD RQ  L R+GL+A   SSVLG GR ++ S+GVEDQ +KS Y  +   +  G  E    G +TP
Sbjct:   24 RYQQGLLMHSHSRFHRQPPSGEQHDRRQDVLVREGLVAPKQSSVLGYGRRDVYSYGVEDQLAKSNYCPQEKIKVEGHFERNRGGRWTP 111          
BLAST of mRNA_P-wetherbeei_contig10356.1.1 vs. uniprot
Match: A0A7S2R993_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R993_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.010e-6
Identity = 44/108 (40.74%), Postives = 53/108 (49.07%), Query Frame = 2
Query:  602 REEYVLLRDSLYRFHAPAWTGEGHDARQGTLRRQG-----LLAAASSS---------VLGVGR--SEMQSFGVEDQFSKSLYDERNGCRFG-GLPEACEPGCYTPRKL 874
            RE    L  S YRF  P  +G+ HD RQ TL   G     + AA   +         VLG  R    + S GVEDQFSK+LY+     R   GL EA  PG +TPRK+
Sbjct:   44 REAQQELARSRYRFFLPVPSGDAHDRRQETLVLDGGGRSHVRAAGGGNGKARPKLTMVLGTSRPMDSIPSHGVEDQFSKNLYELSRPPRSSVGLVEARSPGKFTPRKV 151          
BLAST of mRNA_P-wetherbeei_contig10356.1.1 vs. uniprot
Match: A0A7S2TM90_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TM90_9EUKA)

HSP 1 Score: 54.3 bits (129), Expect = 4.580e-5
Identity = 54/160 (33.75%), Postives = 71/160 (44.38%), Query Frame = 2
Query:  338 TRFHKGFQRRPYRKILQDI-----DRRKHEELKDEARAASSEHRRRRLEALDKRNQFNIITGEHSEALLRATSPSRGVEALARRSENLSVLAAREEYVLLRDSLYRFHAPAWTGEGHDARQGTLRRQG----LLAAASSSVLGVGRSEMQSFGVEDQFSK 790
            TRFHKGF R+    I Q +     + + H+ELK   R   +E RR  L    +RN  NIITG        +  P        + S+  S   A+E  V +     RFH P         R+  LRRQ           SS+LG GRSE+QS G  D F++
Sbjct:   57 TRFHKGFHRKNITAIKQQVAMKMPEIQAHQELKASRRPIIAEQRRENLRRNLQRNG-NIITG--------SGMPREQYLGRKKLSDAPSKCMAKESRVRMMTGGARFHIPL----SPRGREKNLRRQQPRLRQAIKGRSSILGYGRSELQSLGTLDNFAE 203          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10356.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G928_ECTSI7.530e-4850.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2X5L6_9STRA4.680e-3042.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NGF4_9STRA9.300e-2037.56Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1W0A503_9STRA1.930e-1229.65Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S4DG49_HETAK7.420e-1044.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2R993_9STRA2.010e-640.74Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2TM90_9EUKA4.580e-533.75Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10356contigP-wetherbeei_contig10356:959..2165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G928
Model size916
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.9e-49
EggNOG OGs2EXPF@1|root,2SZAY@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002120.1
Cds size843
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185865.3278346-UTR-P-wetherbeei_contig10356:958..10311683185865.3278346-UTR-P-wetherbeei_contig10356:958..1031Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10356 959..1031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185865.3412004-CDS-P-wetherbeei_contig10356:1031..15261683185865.3412004-CDS-P-wetherbeei_contig10356:1031..1526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10356 1032..1526 +
1683185865.3593273-CDS-P-wetherbeei_contig10356:1817..21651683185865.3593273-CDS-P-wetherbeei_contig10356:1817..2165Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10356 1818..2165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10356.1.1prot_P-wetherbeei_contig10356.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10356 1032..2165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10356.1.1

>prot_P-wetherbeei_contig10356.1.1 ID=prot_P-wetherbeei_contig10356.1.1|Name=mRNA_P-wetherbeei_contig10356.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=281bp
MVVSGSHEPKNSIHAVLDASYFFNKFNQPPEQAVGIRTAYREGHAYREWE
YLRHNVNGGHAGAGSSVNGGEVVTVRPKYIPIEKGLATTRFHKGFQRRPY
RKILQDIDRRKHEELKDEARAASSEHRRRRLEALDKRNQFNIITGEHSEA
LLRATSPSRGVEALARRSENLSVLAAREEYVLLRDSLYRFHAPAWTGEGH
DARQGTLRRQGLLAAASSSVLGVGRSEMQSFGVEDQFSKSLYDERNGCRF
GGLPEACEPGCYTPRKLSAAASAARLARTNS
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mRNA from alignment at P-wetherbeei_contig10356:959..2165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10356.1.1 ID=mRNA_P-wetherbeei_contig10356.1.1|Name=mRNA_P-wetherbeei_contig10356.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1207bp|location=Sequence derived from alignment at P-wetherbeei_contig10356:959..2165+ (Phaeothamnion wetherbeei SAG_119_79)
CCTTTTCCTGGGAGGGTCAAGGCGCCAAGGCTGAAGCAGTATTCACGTCG CCTCGAACCAAGCCGCCCGCATCATGGTCGTTTCGGGTAGCCACGAGCCC AAGAACTCGATTCACGCTGTCCTCGACGCTTCATACTTCTTCAATAAATT TAATCAGCCTCCTGAACAGGCAGTGGGCATAAGGACGGCGTACAGAGAAG GCCATGCATACAGAGAATGGGAATACTTGAGGCATAACGTGAATGGCGGC CATGCGGGCGCGGGCTCGAGTGTGAACGGAGGGGAAGTTGTGACGGTGCG ACCGAAGTATATACCCATTGAGAAGGGGCTAGCAACGACACGTTTCCACA AAGGCTTCCAGCGGCGGCCGTACCGAAAAATTTTGCAGGATATCGATCGC CGCAAGCACGAAGAGCTCAAGGACGAAGCTCGGGCCGCATCGTCGGAGCA CCGGCGCCGGCGTCTGGAGGCACTCGACAAGCGCAACCAGTTCAACATCA TCACTGGCGAGCACAGCGAGGCATTGCTGCGCGCAACGTCGCCGTCGCGC GGCGTCGAGGCCCTGGCGGTGAGTGCTTGGTCGGATAACATTTTTGGCCT CCTTTTTGTCCTGGGAATAAGAGGCTTTGCAACAAATAGAGCGTGTGTTT ATCTTGCGCTTGTACCGTTGTCATCGGAAGGTGGCGAATGGGGGTGCACC AGCCTTCAGGGGTTCCTCGCTTTGACGCGCTGGAATGCGTGCCAGATTTG TGTCATGCTCGTGAAAGCATGTAAGCGTTTTCCCTAGCGACCTCCCTCCC AGCTGTTAACGCCTGAACGGAACGAAACCCGCCAAATGTCCTCCCTCTAC TGTCGGCAGCGGCGGTCTGAAAACCTGTCGGTGCTTGCCGCTCGCGAAGA GTACGTCCTCCTGCGCGACTCGCTCTACCGCTTCCACGCGCCCGCATGGA CCGGCGAGGGACACGACGCCCGCCAGGGAACGCTCCGGCGCCAGGGCCTG CTGGCGGCGGCGTCCAGCAGCGTCCTGGGAGTCGGCCGCAGCGAGATGCA GTCGTTCGGCGTGGAGGACCAGTTCTCCAAGTCGCTCTACGACGAGCGGA ACGGTTGCCGGTTCGGCGGACTGCCCGAGGCGTGCGAGCCAGGCTGCTAC ACGCCACGGAAGCTCAGCGCTGCGGCGTCGGCGGCGCGGCTGGCGCGGAC AAATTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10356:959..2165+

>mRNA_P-wetherbeei_contig10356.1.1 ID=mRNA_P-wetherbeei_contig10356.1.1|Name=mRNA_P-wetherbeei_contig10356.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig10356:959..2165+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGTTTCGGGTAGCCACGAGCCCAAGAACTCGATTCACGCTGTCCT
CGACGCTTCATACTTCTTCAATAAATTTAATCAGCCTCCTGAACAGGCAG
TGGGCATAAGGACGGCGTACAGAGAAGGCCATGCATACAGAGAATGGGAA
TACTTGAGGCATAACGTGAATGGCGGCCATGCGGGCGCGGGCTCGAGTGT
GAACGGAGGGGAAGTTGTGACGGTGCGACCGAAGTATATACCCATTGAGA
AGGGGCTAGCAACGACACGTTTCCACAAAGGCTTCCAGCGGCGGCCGTAC
CGAAAAATTTTGCAGGATATCGATCGCCGCAAGCACGAAGAGCTCAAGGA
CGAAGCTCGGGCCGCATCGTCGGAGCACCGGCGCCGGCGTCTGGAGGCAC
TCGACAAGCGCAACCAGTTCAACATCATCACTGGCGAGCACAGCGAGGCA
TTGCTGCGCGCAACGTCGCCGTCGCGCGGCGTCGAGGCCCTGGCGCGGCG
GTCTGAAAACCTGTCGGTGCTTGCCGCTCGCGAAGAGTACGTCCTCCTGC
GCGACTCGCTCTACCGCTTCCACGCGCCCGCATGGACCGGCGAGGGACAC
GACGCCCGCCAGGGAACGCTCCGGCGCCAGGGCCTGCTGGCGGCGGCGTC
CAGCAGCGTCCTGGGAGTCGGCCGCAGCGAGATGCAGTCGTTCGGCGTGG
AGGACCAGTTCTCCAAGTCGCTCTACGACGAGCGGAACGGTTGCCGGTTC
GGCGGACTGCCCGAGGCGTGCGAGCCAGGCTGCTACACGCCACGGAAGCT
CAGCGCTGCGGCGTCGGCGGCGCGGCTGGCGCGGACAAATTCC
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