mRNA_P-wetherbeei_contig10346.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10346.1.1
Unique NamemRNA_P-wetherbeei_contig10346.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10346.1.1 vs. uniprot
Match: A0A7S2V865_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V865_9STRA)

HSP 1 Score: 249 bits (637), Expect = 5.520e-80
Identity = 122/139 (87.77%), Postives = 135/139 (97.12%), Query Frame = 1
Query:    4 MSHRKFEAPRHGSLGFLPKKRTRKHHGKIRSFPRDDASKPPHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTIVEAPPMVVVGIVGYVETPAGLRTLTTVWAEHLSEEVKRRFYKNWYKSKKKAFTRYAKKYTE 420
            MSHRKFEAPRHGSLGFLPKKRT+ HHG+IR+FP+DDASKPPHLTAFMAYKAGMTHI REV+RPGSK+HKKEVVEAVTI+EAPPM+VVG+VGYVETP GLR+LTTVWAEHLSEE KRRFYKNWYKSK+KAFT+YAKKYT+
Sbjct:    1 MSHRKFEAPRHGSLGFLPKKRTKHHHGRIRTFPKDDASKPPHLTAFMAYKAGMTHIVREVERPGSKLHKKEVVEAVTIMEAPPMMVVGLVGYVETPRGLRSLTTVWAEHLSEECKRRFYKNWYKSKRKAFTKYAKKYTD 139          
BLAST of mRNA_P-wetherbeei_contig10346.1.1 vs. uniprot
Match: W7T3X6_9STRA (60s ribosomal protein l3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3X6_9STRA)

HSP 1 Score: 241 bits (615), Expect = 1.550e-79
Identity = 118/139 (84.89%), Postives = 131/139 (94.24%), Query Frame = 1
Query:    4 MSHRKFEAPRHGSLGFLPKKRTRKHHGKIRSFPRDDASKPPHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTIVEAPPMVVVGIVGYVETPAGLRTLTTVWAEHLSEEVKRRFYKNWYKSKKKAFTRYAKKYTE 420
            MSHRKF APRHGSLGFLPKKRT+KH GKIRSFP+DD +KPPHLTAFMAYKAGMTH+ REVDR GSK+HKKEVVEAVTI+EAPPM VVG+VGYV TP GLRTLTTVWAEHLS+E++RRFYKNWYKSKKKAFT+YAKK++E
Sbjct:    1 MSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSE 139          
BLAST of mRNA_P-wetherbeei_contig10346.1.1 vs. uniprot
Match: A0A7S3Y2B0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2B0_HETAK)

HSP 1 Score: 243 bits (619), Expect = 2.640e-77
Identity = 121/139 (87.05%), Postives = 130/139 (93.53%), Query Frame = 1
Query:    4 MSHRKFEAPRHGSLGFLPKKRTRKHHGKIRSFPRDDASKPPHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTIVEAPPMVVVGIVGYVETPAGLRTLTTVWAEHLSEEVKRRFYKNWYKSKKKAFTRYAKKYTE 420
            MSHRKFEAPRHGSLGFLPKKRT+KH GKIRSFPRDDASKP HLTAFMAYKAGMTHI RE+D+PGSK +KKEVVEAVT++EAPPMV VG+VGYVETP+GLRTLTTVWA HL E VKRRFYKNWYKSKKKAFT+YAKKY E
Sbjct:    1 MSHRKFEAPRHGSLGFLPKKRTKKHRGKIRSFPRDDASKPTHLTAFMAYKAGMTHIVREMDKPGSKYNKKEVVEAVTVLEAPPMVAVGVVGYVETPSGLRTLTTVWANHLDEAVKRRFYKNWYKSKKKAFTKYAKKYYE 139          
BLAST of mRNA_P-wetherbeei_contig10346.1.1 vs. uniprot
Match: A0A4D9CSA0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSA0_9STRA)

HSP 1 Score: 243 bits (619), Expect = 8.130e-76
Identity = 118/140 (84.29%), Postives = 132/140 (94.29%), Query Frame = 1
Query:    1 VMSHRKFEAPRHGSLGFLPKKRTRKHHGKIRSFPRDDASKPPHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTIVEAPPMVVVGIVGYVETPAGLRTLTTVWAEHLSEEVKRRFYKNWYKSKKKAFTRYAKKYTE 420
            +MSHRKF APRHGSLGFLPKKRT+KH GKIRSFP+DD +KPPHLTAFMAYKAGMTH+ REVDR GSK+HKKEVVEAVTI+EAPPM VVG+VGYV TP GLRTLTTVWAEHLS+E++RRFYKNWYKSKKKAFT+YAKK++E
Sbjct:  228 IMSHRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPAKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSE 367          
BLAST of mRNA_P-wetherbeei_contig10346.1.1 vs. uniprot
Match: A0A835YUS8_9STRA (Ribosomal protein L3 superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUS8_9STRA)

HSP 1 Score: 239 bits (609), Expect = 9.830e-76
Identity = 120/139 (86.33%), Postives = 129/139 (92.81%), Query Frame = 1
Query:    4 MSHRKFEAPRHGSLGFLPKKRTRKHHGKIRSFPRDDASKPPHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTIVEAPPMVVVGIVGYVETPAGLRTLTTVWAEHLSEEVKRRFYKNWYKSKKKAFTRYAKKYTE 420
            MSHRKFEAPR GSLGFLPKKRT+KH GKIRSFPRDDASKP  LTAFMAYKAGMTH+ REV+RPGSK+HKKE VEAVTI+E PPMVVVG+VGYVETP GLRTLTTVWAEHLS+E++RRFYKNWYKSKKKAFTRYAKK  E
Sbjct:    1 MSHRKFEAPRRGSLGFLPKKRTKKHFGKIRSFPRDDASKPCQLTAFMAYKAGMTHVVREVERPGSKLHKKETVEAVTILETPPMVVVGVVGYVETPRGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTRYAKKCAE 139          
BLAST of mRNA_P-wetherbeei_contig10346.1.1 vs. uniprot
Match: A0A6H5JYN6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYN6_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 8.810e-75
Identity = 119/140 (85.00%), Postives = 130/140 (92.86%), Query Frame = 1
Query:    1 VMSHRKFEAPRHGSLGFLPKKRTRKHHGKIRSFPRDDASKPPHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTIVEAPPMVVVGIVGYVETPAGLRTLTTVWAEHLSEEVKRRFYKNWYKSKKKAFTRYAKKYTE 420
             MSHRKFEAPR+GSLGFLPKKRT+KH G IRSFP+DDA+K PHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTI+E PP+VVVG+VGYVETP GLRTLTTVWA HLS+E KRRFYK+WY SKKKAFTRYAKK+ +
Sbjct:   30 TMSHRKFEAPRNGSLGFLPKKRTKKHRGHIRSFPKDDAAKEPHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTILETPPIVVVGVVGYVETPKGLRTLTTVWAGHLSDECKRRFYKHWYTSKKKAFTRYAKKFAD 169          
BLAST of mRNA_P-wetherbeei_contig10346.1.1 vs. uniprot
Match: A0A7S1Q204_ALECA (Hypothetical protein (Fragment) n=2 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1Q204_ALECA)

HSP 1 Score: 232 bits (591), Expect = 1.740e-74
Identity = 112/139 (80.58%), Postives = 129/139 (92.81%), Query Frame = 1
Query:    4 MSHRKFEAPRHGSLGFLPKKRTRKHHGKIRSFPRDDASKPPHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTIVEAPPMVVVGIVGYVETPAGLRTLTTVWAEHLSEEVKRRFYKNWYKSKKKAFTRYAKKYTE 420
            MSHRKFE PRHGSLGFLP+KRT+ HHGKI+SFP+DDASKPPHLTAFM+YKAGMTHI R+V+RPGSK+HKKEV E VTIVEAPPMVVVG VGYVETP G+RTLT+VWA HLS+E KRRFYKNW+K+KKKAFT+Y K+++E
Sbjct:    1 MSHRKFERPRHGSLGFLPRKRTKHHHGKIKSFPKDDASKPPHLTAFMSYKAGMTHIVRDVERPGSKLHKKEVAEGVTIVEAPPMVVVGFVGYVETPRGMRTLTSVWAGHLSDECKRRFYKNWHKAKKKAFTKYQKRWSE 139          
BLAST of mRNA_P-wetherbeei_contig10346.1.1 vs. uniprot
Match: A0A3B4WQ71_SERLL (60S ribosomal protein L3-2-like n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4WQ71_SERLL)

HSP 1 Score: 227 bits (578), Expect = 7.140e-74
Identity = 110/139 (79.14%), Postives = 125/139 (89.93%), Query Frame = 1
Query:    4 MSHRKFEAPRHGSLGFLPKKRTRKHHGKIRSFPRDDASKPPHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTIVEAPPMVVVGIVGYVETPAGLRTLTTVWAEHLSEEVKRRFYKNWYKSKKKAFTRYAKKYTE 420
            MSHRKFE PRHGSLGFLP+KR  +H GK++SFP+DD SK PHLTAF+AYKAGMTHI R+VD+PGSK HKKEVVEAVT++EAPPMVVVG+VGYVET  GLR LTTVWAEHL++EVKRRFYKNWY+SKKKAFT Y KKY +
Sbjct:    1 MSHRKFERPRHGSLGFLPRKRASRHRGKVKSFPKDDRSKAPHLTAFLAYKAGMTHILRDVDKPGSKAHKKEVVEAVTVLEAPPMVVVGMVGYVETAKGLRALTTVWAEHLNDEVKRRFYKNWYRSKKKAFTNYVKKYAD 139          
BLAST of mRNA_P-wetherbeei_contig10346.1.1 vs. uniprot
Match: A0A2R5GAY6_9STRA (60S ribosomal protein L3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAY6_9STRA)

HSP 1 Score: 234 bits (596), Expect = 7.590e-74
Identity = 116/139 (83.45%), Postives = 128/139 (92.09%), Query Frame = 1
Query:    4 MSHRKFEAPRHGSLGFLPKKRTRKHHGKIRSFPRDDASKPPHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTIVEAPPMVVVGIVGYVETPAGLRTLTTVWAEHLSEEVKRRFYKNWYKSKKKAFTRYAKKYTE 420
            MSHRKFEAPRHGSLGFLP+KR++ H GKIR+FP+DDASK  HLTAFMAYKAGMTH+ R VD+PGS VHKKEV+EAVTI+EAPPMV VGIVGY+ETP GLR+LTTVWAEHLSEE KRRFYKNWY SKKKAFT+YAKKYTE
Sbjct:    1 MSHRKFEAPRHGSLGFLPRKRSKHHRGKIRAFPKDDASKDTHLTAFMAYKAGMTHVTRTVDKPGSNVHKKEVLEAVTILEAPPMVGVGIVGYIETPRGLRSLTTVWAEHLSEEAKRRFYKNWYHSKKKAFTKYAKKYTE 139          
BLAST of mRNA_P-wetherbeei_contig10346.1.1 vs. uniprot
Match: A0A8K1FED4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FED4_PYTOL)

HSP 1 Score: 234 bits (596), Expect = 8.490e-74
Identity = 115/137 (83.94%), Postives = 127/137 (92.70%), Query Frame = 1
Query:    4 MSHRKFEAPRHGSLGFLPKKRTRKHHGKIRSFPRDDASKPPHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTIVEAPPMVVVGIVGYVETPAGLRTLTTVWAEHLSEEVKRRFYKNWYKSKKKAFTRYAKKY 414
            M HRKFEAPRHG LGFLPKKRT+ H G++R FPRDDASK PHLTAFM YKAGMTHI REVDRPGSKVHKKEVVEAVTI+E PPMVVVG+VGY+ETP GLRTLTTV+AEHL+EEVKRRFYKNWY+SK+KAFT+Y+KKY
Sbjct:    1 MGHRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGYKAGMTHIVREVDRPGSKVHKKEVVEAVTILETPPMVVVGVVGYLETPRGLRTLTTVFAEHLNEEVKRRFYKNWYRSKRKAFTKYSKKY 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10346.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V865_9STRA5.520e-8087.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7T3X6_9STRA1.550e-7984.8960s ribosomal protein l3 n=1 Tax=Nannochloropsis g... [more]
A0A7S3Y2B0_HETAK2.640e-7787.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CSA0_9STRA8.130e-7684.29Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835YUS8_9STRA9.830e-7686.33Ribosomal protein L3 superfamily protein n=1 Tax=T... [more]
A0A6H5JYN6_9PHAE8.810e-7585.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1Q204_ALECA1.740e-7480.58Hypothetical protein (Fragment) n=2 Tax=Alexandriu... [more]
A0A3B4WQ71_SERLL7.140e-7479.1460S ribosomal protein L3-2-like n=1 Tax=Seriola la... [more]
A0A2R5GAY6_9STRA7.590e-7483.4560S ribosomal protein L3 n=1 Tax=Hondaea fermental... [more]
A0A8K1FED4_PYTOL8.490e-7483.94Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10346contigP-wetherbeei_contig10346:3..728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FHR5
Preferred nameRPL3
PFAMsRibosomal_L3
Model size420
Max annot lvl2759|Eukaryota
KEGG koko:K02925
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.13e-75
EggNOG OGsCOG0087@1|root,KOG0746@2759|Eukaryota
Descriptionribosomal large subunit assembly
Cds size417
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.6672382-CDS-P-wetherbeei_contig10346:2..351683185864.6672382-CDS-P-wetherbeei_contig10346:2..35Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10346 3..35 -
1683185864.678783-CDS-P-wetherbeei_contig10346:341..7251683185864.678783-CDS-P-wetherbeei_contig10346:341..725Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10346 342..725 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.6882527-UTR-P-wetherbeei_contig10346:725..7281683185864.6882527-UTR-P-wetherbeei_contig10346:725..728Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10346 726..728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10346.1.1prot_P-wetherbeei_contig10346.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10346 3..725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10346.1.1

>prot_P-wetherbeei_contig10346.1.1 ID=prot_P-wetherbeei_contig10346.1.1|Name=mRNA_P-wetherbeei_contig10346.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MSHRKFEAPRHGSLGFLPKKRTRKHHGKIRSFPRDDASKPPHLTAFMAYK
AGMTHIAREVDRPGSKVHKKEVVEAVTIVEAPPMVVVGIVGYVETPAGLR
TLTTVWAEHLSEEVKRRFYKNWYKSKKKAFTRYAKKYTE
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mRNA from alignment at P-wetherbeei_contig10346:3..728-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10346.1.1 ID=mRNA_P-wetherbeei_contig10346.1.1|Name=mRNA_P-wetherbeei_contig10346.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=726bp|location=Sequence derived from alignment at P-wetherbeei_contig10346:3..728- (Phaeothamnion wetherbeei SAG_119_79)
GTCATGTCCCATCGAAAGTTCGAGGCGCCGCGGCACGGATCCCTGGGCTT CTTGCCCAAGAAGCGGACCCGGAAGCACCACGGCAAGATCCGCTCGTTCC CGCGTGACGACGCGTCCAAGCCACCGCACCTGACGGCATTCATGGCCTAC AAGGCGGGCATGACGCACATCGCCCGCGAAGTGGATCGGCCGGGTTCCAA GGTCCACAAGAAGGAGGTGGTGGAGGCTGTCACCATCGTCGAGGCACCCC CGATGGTCGTCGTCGGCATTGTCGGCTATGTCGAAACCCCCGCCGGCCTC CGGACGCTCACCACCGTTTGGGCGGAGCACCTCAGCGAGGAGGTCAAGCG ACGATTTTACAAGAACTGGTATAAGTCGAAGAAGAAGGTGCGTTTTCCCC CATCCTTTTTTGTCTCGCTGTCTGCGTGCATCCCGAAACCGCTATTTCTG TCGCAGCGGCTGTCCTGAATCACTGCTGGCGTTACCTGCCGCACTGTATC GTCGTCCGGGCGAAAATCGTGTCATCGCTCGCAGGCCTTGTAGTCACCTT TCGGGCTCGGGATAACGACGGGTTTAACTGTTTTGCACTGGTTTCTTCGT TCCTTTCTCCTCTTCCTTCTACTACGTGTTATGCTTTACCATTTTTCGTC TCCCTCTTCCATCCGCTGTATCCTATTTCACCGCAATACACAGGCCTTCA CCCGGTACGCGAAGAAGTACACGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10346:3..728-

>mRNA_P-wetherbeei_contig10346.1.1 ID=mRNA_P-wetherbeei_contig10346.1.1|Name=mRNA_P-wetherbeei_contig10346.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig10346:3..728- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCCATCGAAAGTTCGAGGCGCCGCGGCACGGATCCCTGGGCTTCTT
GCCCAAGAAGCGGACCCGGAAGCACCACGGCAAGATCCGCTCGTTCCCGC
GTGACGACGCGTCCAAGCCACCGCACCTGACGGCATTCATGGCCTACAAG
GCGGGCATGACGCACATCGCCCGCGAAGTGGATCGGCCGGGTTCCAAGGT
CCACAAGAAGGAGGTGGTGGAGGCTGTCACCATCGTCGAGGCACCCCCGA
TGGTCGTCGTCGGCATTGTCGGCTATGTCGAAACCCCCGCCGGCCTCCGG
ACGCTCACCACCGTTTGGGCGGAGCACCTCAGCGAGGAGGTCAAGCGACG
ATTTTACAAGAACTGGTATAAGTCGAAGAAGAAGGCCTTCACCCGGTACG
CGAAGAAGTACACGGAA
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