mRNA_P-wetherbeei_contig10328.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10328.1.1
Unique NamemRNA_P-wetherbeei_contig10328.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10328.1.1 vs. uniprot
Match: D8LJX1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX1_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.320e-20
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 CIKSWRQSTTVEKGVSRSCPSCRRLSHFVVPSKVHCEGEAKARVIENYKKTLAVLPCRYFKPPAEGRPGTS--CPFGASCF 237
            C+++WR+S   +K +SR+CP CR++S F+VPSK H +G+AK + I+ YKK L+ LPC+Y KP      GT+  CPFG+ CF
Sbjct:  196 CLRTWRKSKGPQKDISRTCPECRKVSFFLVPSKEHLKGKAKLKAIQAYKKGLSKLPCKYHKPGKASGGGTTTVCPFGSRCF 276          
BLAST of mRNA_P-wetherbeei_contig10328.1.1 vs. uniprot
Match: A0A6H5JI27_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI27_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.520e-20
Identity = 39/81 (48.15%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 CIKSWRQSTTVEKGVSRSCPSCRRLSHFVVPSKVHCEGEAKARVIENYKKTLAVLPCRYFKPPAEGRPGTS--CPFGASCF 237
            C+++WR+S   +K +SR+CP CR++S F+VPSK H +G+AK + I+ YK+ L+ LPC+Y KP      GT+  CPFG+ CF
Sbjct:  198 CLRTWRKSKGPQKDISRTCPECRKVSFFLVPSKEHLKGKAKLKAIQAYKQGLSKLPCKYHKPGNASGGGTTTVCPFGSRCF 278          
BLAST of mRNA_P-wetherbeei_contig10328.1.1 vs. uniprot
Match: A0A7R9YAR0_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAR0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.960e-13
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 CIKSWRQSTTVEKGVSRSCPSCRRLSHFVVPSKVHCEGEAKARVIENYKKTLAVLPCRYFKPPAEGRPGTSCPFGASCF 237
            CI++WR+         R+CP+CR  S+F +P   +  GE K +VIE+YKK L+ +PCRYF        G +CPF + CF
Sbjct:  114 CIRTWRKEGCGSATHKRTCPTCRTTSNFFMPHFEYVRGEKKHQVIEDYKKRLSEIPCRYFSR------GETCPFRSECF 186          
BLAST of mRNA_P-wetherbeei_contig10328.1.1 vs. uniprot
Match: A0A1R2CD08_9CILI (RING-type E3 ubiquitin transferase n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CD08_9CILI)

HSP 1 Score: 71.6 bits (174), Expect = 2.740e-13
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    1 CIKSWRQSTTVEKGVSRSCPSCRRLSHFVVPSKVHCEG-EAKARVIENYKKTLAVLPCRYFKPPAEGRPGTSCPFGASCF 237
            CI+ WR      K V RSCP CR LSH+++PS  + E  + K ++ + YK  L  +PC++F    EG    +CPFG+SCF
Sbjct:   92 CIRKWRGQLNAPKEVVRSCPLCRTLSHYIIPSPEYIESYQEKMKLADQYKVKLGNIPCKFFNY-GEG----TCPFGSSCF 166          
BLAST of mRNA_P-wetherbeei_contig10328.1.1 vs. uniprot
Match: A0A5A7PYE0_STRAF (RING-type E3 ubiquitin transferase n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PYE0_STRAF)

HSP 1 Score: 72.0 bits (175), Expect = 3.160e-13
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 CIKSWRQSTTVE----KGVSRSCPSCRRLSHFVVPSKV-HCEGEAKARVIENYKKTLAVLPCRYFKPPAEGRPGTSCPFGASCF 237
            CI+SWR ST V        SRSCP CRRLS+FVVPS V +   E K  ++++YK  L  + C++F    +G     CPFGASCF
Sbjct:  168 CIRSWRSSTPVPGIDASSASRSCPVCRRLSYFVVPSFVWYSSMEEKKEIVDSYKARLRCIDCKHFDF-GDG----CCPFGASCF 246          
BLAST of mRNA_P-wetherbeei_contig10328.1.1 vs. uniprot
Match: A0A2I0ITS2_PUNGR (RING-type E3 ubiquitin transferase n=3 Tax=Punica granatum TaxID=22663 RepID=A0A2I0ITS2_PUNGR)

HSP 1 Score: 72.0 bits (175), Expect = 6.070e-13
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 CIKSWRQSTTVE----KGVSRSCPSCRRLSHFVVPSKV-HCEGEAKARVIENYKKTLAVLPCRYFKPPAEGRPGTSCPFGASCF 237
            CI++WR+S+          SRSCP CR+LS+FVVPS + +   E K R+I NYK  L ++ C++F          +CPFG+SCF
Sbjct:  282 CIRNWRRSSPASGMDVNSASRSCPICRKLSYFVVPSDIWYTTKEEKERIISNYKARLKLIDCKHFN-----FGNGNCPFGSSCF 360          
BLAST of mRNA_P-wetherbeei_contig10328.1.1 vs. uniprot
Match: A0A7S0NYN6_9EUKA (RING-type E3 ubiquitin transferase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NYN6_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 1.550e-12
Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    1 CIKSWRQSTTVEKGVSRSCPSCRRLSHFVVPSKVH-CEGEAKARVIENYKKTLAVLPCRYFKPPAEGRPGTSCPFGASCF 237
            CI+ WR +  V   V+RSCP CR LS+FVVPS V  C    K ++I+ Y   L+ LPC++F   A G  GT C FG SCF
Sbjct:   63 CIRRWRATHAVRPQVARSCPECRVLSNFVVPSPVFLCHPLRKEQLIQGYLNRLSSLPCKHF---AFGE-GT-CAFGTSCF 137          
BLAST of mRNA_P-wetherbeei_contig10328.1.1 vs. uniprot
Match: UPI000711FB5B (zinc finger family protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711FB5B)

HSP 1 Score: 69.7 bits (169), Expect = 1.580e-12
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 CIKSWRQSTTVEKGVSRSCPSCRRLSHFVVPSKVHC-EGEAKARVIENYKKTLAVLPCRYFKPPAEGRPGTSCPFGASCF 237
            CI++WR S   +  V R CP CR  S +V+PS     + E K R++E YKK +A +PC+YF     G  G  CPFG SCF
Sbjct:  121 CIRNWRYSNLGDPNVRR-CPLCRATSFYVIPSNEPIFDPEVKQRIVEEYKKNMAKIPCKYFN----GGKGV-CPFGESCF 194          
BLAST of mRNA_P-wetherbeei_contig10328.1.1 vs. uniprot
Match: A0A8C4A998_9TELE (E3 ubiquitin-protein ligase makorin-2 n=3 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4A998_9TELE)

HSP 1 Score: 70.1 bits (170), Expect = 2.810e-12
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    1 CIKSWRQSTTVEKGVSRSCPSCRRLSHFVVPSKVHCEG-EAKARVIENYKKTLAVLPCRYFKPPAEGRPGTSCPFGASCF 237
            CI+ WR +   E  + +SCP CR +S FV+PS    E  E K R+IE +K  ++  PC+YF    +GR GT CPFGA CF
Sbjct:  272 CIRQWRCAKQFENKIIKSCPECRVVSEFVIPSMYWVEDQEEKNRLIEEFKSGVSKKPCKYFD---QGR-GT-CPFGAKCF 346          
BLAST of mRNA_P-wetherbeei_contig10328.1.1 vs. uniprot
Match: A0A2H9TJR6_9FUNG (RING-type E3 ubiquitin transferase n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TJR6_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 4.140e-12
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 CIKSWRQSTTVEKGVSRSCPSCRRLSHFVVPSKVHCEG-EAKARVIENYKKTLAVLPCRYFKPPAEGRPGTSCPFGASCF 237
            CI++WR   T+    ++SCP CR +++F++PS     G E K R+IE YKK L  + C+YF    E      CPFG SCF
Sbjct:  413 CIRTWRGKHTMHDLATKSCPLCRVVTYFIIPSSTWTTGIEEKQRIIEAYKKKLGEIDCKYFYYGDE-----VCPFGGSCF 487          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10328.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJX1_ECTSI1.320e-2049.38RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5JI27_9PHAE6.520e-2048.15RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A7R9YAR0_9STRA1.960e-1341.77RING-type E3 ubiquitin transferase n=1 Tax=Pinguio... [more]
A0A1R2CD08_9CILI2.740e-1342.50RING-type E3 ubiquitin transferase n=1 Tax=Stentor... [more]
A0A5A7PYE0_STRAF3.160e-1347.62RING-type E3 ubiquitin transferase n=1 Tax=Striga ... [more]
A0A2I0ITS2_PUNGR6.070e-1342.86RING-type E3 ubiquitin transferase n=3 Tax=Punica ... [more]
A0A7S0NYN6_9EUKA1.550e-1248.75RING-type E3 ubiquitin transferase n=1 Tax=Calcidi... [more]
UPI000711FB5B1.580e-1245.00zinc finger family protein n=1 Tax=Blastocystis sp... [more]
A0A8C4A998_9TELE2.810e-1246.25E3 ubiquitin-protein ligase makorin-2 n=3 Tax=Dent... [more]
A0A2H9TJR6_9FUNG4.140e-1242.50RING-type E3 ubiquitin transferase n=1 Tax=Paramic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10328contigP-wetherbeei_contig10328:1913..2149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJX1
PFAMszf-C3HC4,zf-C3HC4_3,zf-CCCH,zf-RING_2
Model size237
Max annot lvl2759|Eukaryota
KEGG koko:K15687
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.17e-21
EggNOG OGsKOG1039@1|root,KOG1039@2759|Eukaryota
EC2.3.2.27
Descriptionprotein ubiquitination
Cds size237
COG categoryL
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.929563-CDS-P-wetherbeei_contig10328:1912..21491683185863.929563-CDS-P-wetherbeei_contig10328:1912..2149Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10328 1913..2149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10328.1.1prot_P-wetherbeei_contig10328.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10328 1913..2149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10328.1.1

>prot_P-wetherbeei_contig10328.1.1 ID=prot_P-wetherbeei_contig10328.1.1|Name=mRNA_P-wetherbeei_contig10328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
CIKSWRQSTTVEKGVSRSCPSCRRLSHFVVPSKVHCEGEAKARVIENYKK
TLAVLPCRYFKPPAEGRPGTSCPFGASCF
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mRNA from alignment at P-wetherbeei_contig10328:1913..2149-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10328.1.1 ID=mRNA_P-wetherbeei_contig10328.1.1|Name=mRNA_P-wetherbeei_contig10328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig10328:1913..2149- (Phaeothamnion wetherbeei SAG_119_79)
TGCATCAAGAGCTGGCGGCAGTCGACGACGGTGGAGAAAGGCGTGTCGCG GTCGTGCCCGTCGTGCCGCCGCCTGAGCCACTTTGTGGTGCCCTCCAAGG TGCACTGCGAGGGCGAGGCCAAGGCGCGCGTCATTGAAAACTACAAGAAG ACACTGGCGGTGCTGCCGTGCCGCTACTTCAAGCCGCCCGCCGAGGGGCG GCCAGGGACGTCGTGCCCGTTCGGGGCCAGCTGCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10328:1913..2149-

>mRNA_P-wetherbeei_contig10328.1.1 ID=mRNA_P-wetherbeei_contig10328.1.1|Name=mRNA_P-wetherbeei_contig10328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig10328:1913..2149- (Phaeothamnion wetherbeei SAG_119_79)
TGCATCAAGAGCTGGCGGCAGTCGACGACGGTGGAGAAAGGCGTGTCGCG
GTCGTGCCCGTCGTGCCGCCGCCTGAGCCACTTTGTGGTGCCCTCCAAGG
TGCACTGCGAGGGCGAGGCCAAGGCGCGCGTCATTGAAAACTACAAGAAG
ACACTGGCGGTGCTGCCGTGCCGCTACTTCAAGCCGCCCGCCGAGGGGCG
GCCAGGGACGTCGTGCCCGTTCGGGGCCAGCTGCTTC
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