mRNA_P-wetherbeei_contig1032.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1032.4.1
Unique NamemRNA_P-wetherbeei_contig1032.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1032.4.1 vs. uniprot
Match: A0A2R5G436_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G436_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.700e-8
Identity = 25/34 (73.53%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    7 TTAVAVGYSTGFLPLKIPLAPLLNVVFCWFPFFD 108
            TT   V  STGFLPL IPLAPLLN+V CWFPF D
Sbjct:   93 TTLKVVDGSTGFLPLTIPLAPLLNIVLCWFPFGD 126
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BLAST of mRNA_P-wetherbeei_contig1032.4.1 vs. uniprot
Match: D7FLG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLG9_ECTSI)

HSP 1 Score: 46.6 bits (109), Expect = 6.830e-5
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   25 GYSTGFLPLKIPLAPLLNVVFCWFPFFD 108
            GYSTGFLPLKIPLA L+N+  C+ PF D
Sbjct:  142 GYSTGFLPLKIPLACLINIPLCFIPFSD 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1032.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2R5G436_9STRA5.700e-873.53Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
D7FLG9_ECTSI6.830e-571.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1032contigP-wetherbeei_contig1032:7705..7812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog946362.XP_004990719.1
Model size108
Max annot lvl946362.XP_004990719.1|-
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.62e-06
EggNOG OGs2DZPK@1|root,2S76K@2759|Eukaryota,3A8NC@33154|Opisthokonta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_001230.1
Cds size108
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.6041193-CDS-P-wetherbeei_contig1032:7704..78121683185863.6041193-CDS-P-wetherbeei_contig1032:7704..7812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1032 7705..7812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1032.4.1prot_P-wetherbeei_contig1032.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1032 7705..7812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1032.4.1

>prot_P-wetherbeei_contig1032.4.1 ID=prot_P-wetherbeei_contig1032.4.1|Name=mRNA_P-wetherbeei_contig1032.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=36bp
GATTAVAVGYSTGFLPLKIPLAPLLNVVFCWFPFFD
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mRNA from alignment at P-wetherbeei_contig1032:7705..7812-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1032.4.1 ID=mRNA_P-wetherbeei_contig1032.4.1|Name=mRNA_P-wetherbeei_contig1032.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=108bp|location=Sequence derived from alignment at P-wetherbeei_contig1032:7705..7812- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCGACAACGGCTGTCGCTGTCGGCTACAGCACAGGCTTTTTGCCGCT
CAAGATCCCACTGGCGCCGCTGCTCAACGTTGTATTCTGCTGGTTCCCGT
TCTTCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1032:7705..7812-

>mRNA_P-wetherbeei_contig1032.4.1 ID=mRNA_P-wetherbeei_contig1032.4.1|Name=mRNA_P-wetherbeei_contig1032.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=108bp|location=Sequence derived from alignment at P-wetherbeei_contig1032:7705..7812- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCGACAACGGCTGTCGCTGTCGGCTACAGCACAGGCTTTTTGCCGCT
CAAGATCCCACTGGCGCCGCTGCTCAACGTTGTATTCTGCTGGTTCCCGT
TCTTCGAC
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