mRNA_P-wetherbeei_contig10241.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10241.1.1
Unique NamemRNA_P-wetherbeei_contig10241.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10241.1.1 vs. uniprot
Match: A0A835Z6J7_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.290e-24
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 1
Query:   49 SKKLEAPANFSGATDRKCTDVLFSVLIVGMWVAMTVVGIESVQEGDPEILINGVDYKGRICGKSSGVEDLTKLYYV 276
            S+KL+AP NF G   RKCTD LF +++V  W+AMTV+GI++VQ G+P+ L+NG+DY+GRICG  +GVE LTK+YY+
Sbjct:    6 SQKLQAPPNFDGPVKRKCTDTLFMLVLVCCWIAMTVIGIKAVQTGNPDRLVNGIDYQGRICGVDAGVETLTKMYYI 81          
BLAST of mRNA_P-wetherbeei_contig10241.1.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.040e-20
Identity = 37/74 (50.00%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   55 KLEAPANFSGATDRKCTDVLFSVLIVGMWVAMTVVGIESVQEGDPEILINGVDYKGRICGKSSGVEDLTKLYYV 276
            KL AP +  G  DR+CTDVLF ++++  W+AMT +G++ +  G+P++L+NG+DY GRICG   GV+D +KLYY+
Sbjct:   17 KLAAPDDIEGGADRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYI 90          
BLAST of mRNA_P-wetherbeei_contig10241.1.1 vs. uniprot
Match: D7G036_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G036_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.310e-19
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   55 KLEAPANFSGAT-DRKCTDVLFSVLIVGMWVAMTVVGIESVQEGDPEILINGVDYKGRICGKSSGVEDLTKLYY 273
            KL AP  F G   DRKCTD++F++ I+ MW+ MTVVGI SVQ+GD   L+   DY+G +CG   G ED  KLYY
Sbjct:    4 KLTAPPEFDGPVRDRKCTDIIFTLAIIIMWITMTVVGISSVQQGDVRELLAPTDYEGNLCGFDDGYEDRGKLYY 77          
BLAST of mRNA_P-wetherbeei_contig10241.1.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.380e-19
Identity = 35/71 (49.30%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   64 APANFSGATDRKCTDVLFSVLIVGMWVAMTVVGIESVQEGDPEILINGVDYKGRICGKSSGVEDLTKLYYV 276
            AP +  G  DR+CTDVLF ++++  W+AMT +G++ +  G+P++L+NG+DY GRICG   GV+D +KLYY+
Sbjct:    4 APDDIEGGADRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYI 74          
BLAST of mRNA_P-wetherbeei_contig10241.1.1 vs. uniprot
Match: A0A7S3Y6D2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6D2_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 4.910e-17
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   28 RDETVETSKKLEAPANFSGATD-RKCTDVLFSVLIVGMWVAMTVVGI--------ESVQEGDPEILINGVDYKGRICGKSSGVEDLTKLYYV 276
            +D+    +KKLE  A+F+G  + RKCTD+LF +LI+  WVAMT +G         +++  G+PE LING+DY+G ICG  SGV+  +K+YY+
Sbjct:   60 KDKEHPDNKKLEHSADFAGPCEKRKCTDILFLLLIIACWVAMTFLGFVVTGAIPSDTLDAGNPERLINGIDYEGNICGVDSGVKSKSKIYYL 151          
BLAST of mRNA_P-wetherbeei_contig10241.1.1 vs. uniprot
Match: A0A6V2WBV2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WBV2_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 2.310e-16
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   52 KKLEAPAN---FSGAT-DRKCTDVLFSVLIVGMWVAMTVVGIESVQEGDPEILINGVDYKGRICGKSSGVEDLTKLYYV 276
            ++L+APA    + G T +RKCTDVLF + IV  WV MT+VG++S+Q GD  +L NG+DY G ICG +    D +K+YYV
Sbjct:   20 ERLKAPAGRDEYEGPTANRKCTDVLFFIAIVATWVCMTIVGVDSIQNGDYAVLTNGIDYNGNICG-TGNYSDYSKMYYV 97          
BLAST of mRNA_P-wetherbeei_contig10241.1.1 vs. uniprot
Match: A0A7S3Y650_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y650_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 2.320e-16
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   28 RDETVETSKKLEAPANFSGATD-RKCTDVLFSVLIVGMWVAMTVVGI--------ESVQEGDPEILINGVDYKGRICGKSSGVEDLTKLYYV 276
            +D     +KKLE  A+F G  + RKCTD+LF +L++  WVAMT +G         ++++ G+P+ LING+DY G ICG  S V D +K+YY+
Sbjct:    8 KDRNDPANKKLEGGADFPGPCEKRKCTDILFLLLLIACWVAMTFLGFVVCGVIPNDNLEPGNPQRLINGIDYNGHICGVDSAVSDKSKIYYL 99          
BLAST of mRNA_P-wetherbeei_contig10241.1.1 vs. uniprot
Match: A0A7S2XXR1_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXR1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.880e-16
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   40 VETSKKLEAPANFSGATD-RKCTDVLFSVLIVGMWVAMTVVGIESVQEGDPEILINGVDYKGRICGKSSGVEDLTKLYYV 276
            ++ +KKL     F G TD RKCTD+LF +LI+  W+ +T +G +S   GDP  LI  VDY GR+CG SSGVED   +YY+
Sbjct:   14 IDPNKKLSGDG-FQGPTDQRKCTDILFLILIILAWIILTAIGSDSCVHGDPWTLIAQVDYGGRVCGYSSGVEDSENIYYL 92          
BLAST of mRNA_P-wetherbeei_contig10241.1.1 vs. uniprot
Match: A0A7S2UHE9_9STRA (Choline transporter-like protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHE9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.730e-15
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   28 RDETVETSKKLEAPANFSGATD-RKCTDVLFSVLIVGMWVAMTVVGIESVQEGDPEILINGVDYKGRICGKSSGVEDLTK---LYYV 276
            RDE  E + KLEAPA+F G TD R CTD++ S+LIV MW+AM+ VG  +V  GD   ++N +DY G ICG   G  D+T+   LYYV
Sbjct:    8 RDE--EGTDKLEAPADFDGPTDDRHCTDIVCSILIVIMWIAMSGVGAYAVTNGDYRKILNPLDYDGNICGTDFGGVDMTEYPYLYYV 92          
BLAST of mRNA_P-wetherbeei_contig10241.1.1 vs. uniprot
Match: A0A6H5JW76_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.790e-15
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   55 KLEAPANFSGAT-DRKCTDVLFSVLIVGMWVAMTVVGIESVQEGDPEILINGVDYKGRICGKSSGVEDLTKLYY 273
            KL A   F G   +RKCTD++F + I+ MW+ MT VGI S+Q+GD   L+   DY+G +CG   G EDL KLYY
Sbjct:    7 KLTASPEFDGPVRERKCTDIIFMLAIIIMWITMTAVGISSIQQGDVRELLAPTDYEGNLCGFDDGYEDLGKLYY 80          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10241.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6J7_9STRA1.290e-2459.21Choline transporter-like protein n=1 Tax=Tribonema... [more]
D8LIJ7_ECTSI2.040e-2050.00Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7G036_ECTSI2.310e-1954.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L007_9PHAE3.380e-1949.30Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A7S3Y6D2_HETAK4.910e-1745.65Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A6V2WBV2_HETAK2.310e-1650.63Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A7S3Y650_HETAK2.320e-1643.48Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A7S2XXR1_9STRA5.880e-1650.00Choline transporter-like protein n=1 Tax=Fibrocaps... [more]
A0A7S2UHE9_9STRA2.730e-1551.72Choline transporter-like protein (Fragment) n=1 Ta... [more]
A0A6H5JW76_9PHAE2.790e-1550.00Choline transporter-like protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10241contigP-wetherbeei_contig10241:1329..1604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LIJ7
PFAMsCholine_transpo
Model size276
Max annot lvl2759|Eukaryota
KEGG koko:K06515,ko:K15377
KEGG TC2.A.92.1,2.A.92.1.1
KEGG Pathwayko05231,map05231
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.34e-21
EggNOG OGsKOG1362@1|root,KOG1362@2759|Eukaryota
Descriptioncholine transmembrane transporter activity
Cds size276
COG categoryH
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.781283-CDS-P-wetherbeei_contig10241:1328..16041683185860.781283-CDS-P-wetherbeei_contig10241:1328..1604Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10241 1329..1604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10241.1.1prot_P-wetherbeei_contig10241.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10241 1329..1604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10241.1.1

>prot_P-wetherbeei_contig10241.1.1 ID=prot_P-wetherbeei_contig10241.1.1|Name=mRNA_P-wetherbeei_contig10241.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MGNGGSAGGRDETVETSKKLEAPANFSGATDRKCTDVLFSVLIVGMWVAM
TVVGIESVQEGDPEILINGVDYKGRICGKSSGVEDLTKLYYV
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mRNA from alignment at P-wetherbeei_contig10241:1329..1604+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10241.1.1 ID=mRNA_P-wetherbeei_contig10241.1.1|Name=mRNA_P-wetherbeei_contig10241.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig10241:1329..1604+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAACGGGGGGAGCGCGGGCGGTAGGGACGAGACCGTGGAGACTTC CAAAAAGCTTGAGGCGCCGGCGAATTTTAGCGGGGCGACGGATCGTAAGT GTACTGATGTTCTCTTTTCGGTCCTCATCGTGGGGATGTGGGTTGCGATG ACCGTTGTGGGCATCGAGTCAGTGCAGGAGGGCGATCCCGAGATCCTTAT CAACGGCGTCGACTATAAGGGACGGATATGCGGTAAATCCTCTGGAGTGG AAGACCTAACGAAGCTGTACTACGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10241:1329..1604+

>mRNA_P-wetherbeei_contig10241.1.1 ID=mRNA_P-wetherbeei_contig10241.1.1|Name=mRNA_P-wetherbeei_contig10241.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig10241:1329..1604+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAACGGGGGGAGCGCGGGCGGTAGGGACGAGACCGTGGAGACTTC
CAAAAAGCTTGAGGCGCCGGCGAATTTTAGCGGGGCGACGGATCGTAAGT
GTACTGATGTTCTCTTTTCGGTCCTCATCGTGGGGATGTGGGTTGCGATG
ACCGTTGTGGGCATCGAGTCAGTGCAGGAGGGCGATCCCGAGATCCTTAT
CAACGGCGTCGACTATAAGGGACGGATATGCGGTAAATCCTCTGGAGTGG
AAGACCTAACGAAGCTGTACTACGTG
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