mRNA_P-wetherbeei_contig10170.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10170.2.1
Unique NamemRNA_P-wetherbeei_contig10170.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10170.2.1 vs. uniprot
Match: A0A1V4I876_9CLOT (Glucan endo-1,3-beta-glucosidase A1 n=1 Tax=Clostridium oryzae TaxID=1450648 RepID=A0A1V4I876_9CLOT)

HSP 1 Score: 90.9 bits (224), Expect = 1.230e-19
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 FHVYAIEWSPDSMTWFIDGKETCKKTTWYS-----ALSKRKTAPFDVPFYMLLNLAIGGMYTEGAIVDDSKFPLTMQVDYVRVYQ 240
            +H Y+IEW+ + + W++DG++   +  WY+     A+     APF+ PFY+LLNLA+GG +  GA  D++K P  MQVDYVRVYQ
Sbjct:  211 YHTYSIEWNSNRIDWYVDGRKYYSENKWYTKSEDKAIDSSYPAPFNRPFYLLLNLAVGGNFDNGAAPDNAKLPAKMQVDYVRVYQ 295          
BLAST of mRNA_P-wetherbeei_contig10170.2.1 vs. uniprot
Match: A0A1G5CWB8_9BACL (Glycosyl hydrolases family 16 n=12 Tax=Paenibacillus TaxID=44249 RepID=A0A1G5CWB8_9BACL)

HSP 1 Score: 90.9 bits (224), Expect = 1.530e-19
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 FHVYAIEWSPDSMTWFIDGKETCKKTT--WYSALSKRK-TAPFDVPFYMLLNLAIGGMYTEGAIVDDSKFPLTMQVDYVRVYQ 240
            +HVY++ W PD++ W++DGK   K T   W SA +     APFD PFY+++NLAIGG +  G I D S  P TMQVDYVRVY+
Sbjct:  598 YHVYSVVWEPDNIKWYVDGKFFYKVTNQQWSSAAAPNNPNAPFDEPFYLIMNLAIGGNFDGGRIPDASDIPATMQVDYVRVYK 680          
BLAST of mRNA_P-wetherbeei_contig10170.2.1 vs. uniprot
Match: A0A2M9ML35_9BACL (Glucan endo-1,3-beta-glucosidase A1 n=20 Tax=Bacillales TaxID=1385 RepID=A0A2M9ML35_9BACL)

HSP 1 Score: 90.9 bits (224), Expect = 1.540e-19
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 FHVYAIEWSPDSMTWFIDGKETCKKTT--WYSALSKRK-TAPFDVPFYMLLNLAIGGMYTEGAIVDDSKFPLTMQVDYVRVYQ 240
            +HVY++ W  DS+ W++DGK   K T   WYSA +     APFD PFY+++NLAIGG +  G   D S  P TMQVDYVRVY+
Sbjct:  601 YHVYSVVWEEDSIKWYVDGKFFFKVTRDQWYSAAAPNNPNAPFDQPFYLIMNLAIGGTFDGGRTPDPSDIPATMQVDYVRVYK 683          
BLAST of mRNA_P-wetherbeei_contig10170.2.1 vs. uniprot
Match: A0A2V2YUT2_9BACL (Beta-glucanase (GH16 family) n=1 Tax=Paenibacillus cellulosilyticus TaxID=375489 RepID=A0A2V2YUT2_9BACL)

HSP 1 Score: 90.1 bits (222), Expect = 2.870e-19
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 FHVYAIEWSPDSMTWFIDGKETCK--KTTWYS-ALSKRKTAPFDVPFYMLLNLAIGGMYTEGAIVDDSKFPLTMQVDYVRVYQ 240
            FHVY++ W  D++ W++DGK   K  +  WYS A      APFD PFY+++NLA+GG +  G   D S  P TMQVDYVRVYQ
Sbjct:  591 FHVYSVVWEEDNVKWYVDGKFFLKVSREQWYSVAAPNNPNAPFDQPFYLIMNLAVGGHFDGGLSPDPSDIPATMQVDYVRVYQ 673          
BLAST of mRNA_P-wetherbeei_contig10170.2.1 vs. uniprot
Match: UPI000AF23BEC (family 16 glycosylhydrolase n=1 Tax=Paenibacillus sp. DMB20 TaxID=1642570 RepID=UPI000AF23BEC)

HSP 1 Score: 89.4 bits (220), Expect = 3.060e-19
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 FHVYAIEWSPDSMTWFIDGKETCKKTT--WYSALSKRK-TAPFDVPFYMLLNLAIGGMYTEGAIVDDSKFPLTMQVDYVRVYQ 240
            +HVY++ W  D++ W++DGK   K T   WYSA +     APFD PFY+++NLAIGG +  G   D S  P TMQVDYVRVY+
Sbjct:  114 YHVYSVVWEGDNIKWYVDGKFFFKATRDQWYSAAAPNNPNAPFDQPFYLIMNLAIGGNFDGGRTPDPSDIPATMQVDYVRVYK 196          
BLAST of mRNA_P-wetherbeei_contig10170.2.1 vs. uniprot
Match: UPI00135A6793 (family 16 glycosylhydrolase n=1 Tax=Paenibacillus TaxID=44249 RepID=UPI00135A6793)

HSP 1 Score: 89.7 bits (221), Expect = 3.920e-19
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 FHVYAIEWSPDSMTWFIDGKETCKKTT--WYSALSKRK-TAPFDVPFYMLLNLAIGGMYTEGAIVDDSKFPLTMQVDYVRVYQ 240
            +HVY++ W  D++ W++DGK   K T   WYSA +     APFD PFY+++NLAIGG +  G   D S  P TMQVDYVRVY+
Sbjct:  601 YHVYSVVWEEDNIKWYVDGKFFFKTTRDQWYSAAAPNNPNAPFDQPFYLIMNLAIGGAFDGGHTPDPSDIPATMQVDYVRVYK 683          
BLAST of mRNA_P-wetherbeei_contig10170.2.1 vs. uniprot
Match: A0A3D4D0Q9_9BACT (GH16 domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A3D4D0Q9_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 6.230e-19
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 FHVYAIEWSPDSMTWFIDGK--ETCKKTTWYSALSKRK-TAPFDVPFYMLLNLAIGGMYTE-----GAIVDDSKFPLTMQVDYVRVYQ 240
            FHVYA+EWS D ++WF+DG   +T K + W+SA +++  +AP+D PF+++LN+A+ G + E        +  S+FP  MQVDYVRVYQ
Sbjct:   63 FHVYALEWSADEISWFVDGVRWKTRKASEWWSASARQNPSAPYDQPFHLILNVAVDGRFFEKEDQRADRIPASQFPQVMQVDYVRVYQ 150          
BLAST of mRNA_P-wetherbeei_contig10170.2.1 vs. uniprot
Match: A0A2E3H7Q5_9BACT (GH16 domain-containing protein n=1 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E3H7Q5_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 7.030e-19
Identity = 41/88 (46.59%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 FHVYAIEWSPDSMTWFIDGKE--TCKKTTWYSALSKRK-TAPFDVPFYMLLNLAIGGMYTE-----GAIVDDSKFPLTMQVDYVRVYQ 240
            FHVYA+EWS D ++WF+DG++  T +K+ W+SA +++  +AP+D PF+++LN+A+ G + E        +  S+FP  MQVDYVRVYQ
Sbjct:  245 FHVYAVEWSADEISWFVDGRKWKTRRKSEWWSASARKNPSAPYDQPFHLILNVAVDGRFFEKEDQKADRIPASQFPQVMQVDYVRVYQ 332          
BLAST of mRNA_P-wetherbeei_contig10170.2.1 vs. uniprot
Match: A0A1R0Y003_9BACL (Glucan endo-1,3-beta-D-glucosidase n=26 Tax=Paenibacillus TaxID=44249 RepID=A0A1R0Y003_9BACL)

HSP 1 Score: 89.0 bits (219), Expect = 7.310e-19
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 FHVYAIEWSPDSMTWFIDGKETCK--KTTWYS-ALSKRKTAPFDVPFYMLLNLAIGGMYTEGAIVDDSKFPLTMQVDYVRVYQ 240
            +HVY++ W  D+M W++DGK   K  +  WYS A      APFD PFY+++NLAIGG +  G   D S  P TMQVDYVRVY+
Sbjct:  598 YHVYSMVWEEDNMKWYVDGKFFFKVSRDQWYSVAAPNNPNAPFDQPFYIIMNLAIGGYFDNGHTPDPSDIPATMQVDYVRVYK 680          
BLAST of mRNA_P-wetherbeei_contig10170.2.1 vs. uniprot
Match: A0A0M1N1S0_9BACL (Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Paenibacillus solani TaxID=1705565 RepID=A0A0M1N1S0_9BACL)

HSP 1 Score: 89.0 bits (219), Expect = 7.310e-19
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 FHVYAIEWSPDSMTWFIDGKETCKKTT--WYSALSKRK-TAPFDVPFYMLLNLAIGGMYTEGAIVDDSKFPLTMQVDYVRVYQ 240
            +HVY++ W  D++ W++DGK   K T   WYSA +     APFD PFY+++NLA+GG +  G   D S  P TMQVDYVRVY+
Sbjct:  600 YHVYSVVWEEDNIKWYVDGKFFFKVTRDQWYSAAAPNNPNAPFDQPFYLIMNLALGGTFDGGRTPDPSDIPATMQVDYVRVYK 682          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10170.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V4I876_9CLOT1.230e-1945.88Glucan endo-1,3-beta-glucosidase A1 n=1 Tax=Clostr... [more]
A0A1G5CWB8_9BACL1.530e-1951.81Glycosyl hydrolases family 16 n=12 Tax=Paenibacill... [more]
A0A2M9ML35_9BACL1.540e-1951.81Glucan endo-1,3-beta-glucosidase A1 n=20 Tax=Bacil... [more]
A0A2V2YUT2_9BACL2.870e-1950.60Beta-glucanase (GH16 family) n=1 Tax=Paenibacillus... [more]
UPI000AF23BEC3.060e-1950.60family 16 glycosylhydrolase n=1 Tax=Paenibacillus ... [more]
UPI00135A67933.920e-1950.60family 16 glycosylhydrolase n=1 Tax=Paenibacillus ... [more]
A0A3D4D0Q9_9BACT6.230e-1946.59GH16 domain-containing protein n=1 Tax=Verrucomicr... [more]
A0A2E3H7Q5_9BACT7.030e-1946.59GH16 domain-containing protein n=1 Tax=Roseibacill... [more]
A0A1R0Y003_9BACL7.310e-1950.60Glucan endo-1,3-beta-D-glucosidase n=26 Tax=Paenib... [more]
A0A0M1N1S0_9BACL7.310e-1949.40Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Paeniba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10170contigP-wetherbeei_contig10170:1120..1359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog743719.PaelaDRAFT_1910
PFAMsBig_2,Glyco_hydro_16
Model size240
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.43e-20
EggNOG OGsCOG2273@1|root,COG3488@1|root,COG5492@1|root,COG2273@2|Bacteria,COG3488@2|Bacteria,COG5492@2|Bacteria,1V12B@1239|Firmicutes,4IPRK@91061|Bacilli,2762G@186822|Paenibacillaceae
DescriptionGlucan endo-1,3-beta-D-glucosidase
Cds size240
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185857.2011614-CDS-P-wetherbeei_contig10170:1119..13591683185857.2011614-CDS-P-wetherbeei_contig10170:1119..1359Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10170 1120..1359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10170.2.1prot_P-wetherbeei_contig10170.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10170 1120..1359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10170.2.1

>prot_P-wetherbeei_contig10170.2.1 ID=prot_P-wetherbeei_contig10170.2.1|Name=mRNA_P-wetherbeei_contig10170.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
FHVYAIEWSPDSMTWFIDGKETCKKTTWYSALSKRKTAPFDVPFYMLLNL
AIGGMYTEGAIVDDSKFPLTMQVDYVRVYQ
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mRNA from alignment at P-wetherbeei_contig10170:1120..1359-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10170.2.1 ID=mRNA_P-wetherbeei_contig10170.2.1|Name=mRNA_P-wetherbeei_contig10170.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig10170:1120..1359- (Phaeothamnion wetherbeei SAG_119_79)
TTCCACGTGTACGCCATCGAGTGGTCGCCCGACTCCATGACGTGGTTCAT CGACGGCAAAGAGACGTGCAAGAAGACCACCTGGTATTCGGCGCTCTCCA AGCGGAAGACGGCGCCCTTCGATGTGCCTTTTTACATGCTGCTCAACTTG GCCATCGGCGGCATGTACACGGAGGGCGCCATCGTTGACGACTCCAAGTT CCCGCTCACCATGCAGGTCGACTACGTACGCGTGTACCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10170:1120..1359-

>mRNA_P-wetherbeei_contig10170.2.1 ID=mRNA_P-wetherbeei_contig10170.2.1|Name=mRNA_P-wetherbeei_contig10170.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig10170:1120..1359- (Phaeothamnion wetherbeei SAG_119_79)
TTCCACGTGTACGCCATCGAGTGGTCGCCCGACTCCATGACGTGGTTCAT
CGACGGCAAAGAGACGTGCAAGAAGACCACCTGGTATTCGGCGCTCTCCA
AGCGGAAGACGGCGCCCTTCGATGTGCCTTTTTACATGCTGCTCAACTTG
GCCATCGGCGGCATGTACACGGAGGGCGCCATCGTTGACGACTCCAAGTT
CCCGCTCACCATGCAGGTCGACTACGTACGCGTGTACCAG
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