mRNA_P-wetherbeei_contig10044.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10044.2.1
Unique NamemRNA_P-wetherbeei_contig10044.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10044.2.1 vs. uniprot
Match: A0A6H5JYH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.900e-14
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:   16 IGAASAVQRLTLAAQTST-----VTAGGYRLELNGALTDCIAHDATAAEVAAALAALPDVRGGVSVDGRVFVDDGHYYPVTE 246
            +G +S+VQRL L A +S      +  G YRL L   +T+CI ++AT A++A+AL ALP+V GG SV GRVFVDDG YYPV +
Sbjct: 3395 LGPSSSVQRLVLTAGSSNSPITPIVNGSYRLALGEHMTECIKYNATPADLASALGALPNVAGGASVFGRVFVDDGTYYPVND 3476
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BLAST of mRNA_P-wetherbeei_contig10044.2.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.910e-14
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:   16 IGAASAVQRLTLAAQTST-----VTAGGYRLELNGALTDCIAHDATAAEVAAALAALPDVRGGVSVDGRVFVDDGHYYPVTE 246
            +G +S+VQRL L A +S      +  G YRL L   +T+CI ++AT A++A+AL ALP+V GG SV GRVFVDDG YYPV +
Sbjct: 10870 LGPSSSVQRLVLTAGSSNSPITPIVNGSYRLALGEHMTECIKYNATPADLASALGALPNVAGGASVFGRVFVDDGTYYPVND 10951
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10044.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYH1_9PHAE4.900e-1452.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNA6_ECTSI4.910e-1452.44Similar to titin isoform N2-B n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10044contigP-wetherbeei_contig10044:1498..1775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNA6
PFAMsFilamin,PA14,fn3
Model size279
Max annot lvl2759|Eukaryota
KEGG koko:K12567
KEGG Pathwayko05410,ko05414,map05410,map05414
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.05e-15
EggNOG OGsKOG0613@1|root,KOG0613@2759|Eukaryota
EC2.7.11.1
Descriptioncytoskeletal protein binding
Cds size276
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185851.5055928-CDS-P-wetherbeei_contig10044:1497..17731683185851.5055928-CDS-P-wetherbeei_contig10044:1497..1773Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10044 1498..1773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10044.2.1prot_P-wetherbeei_contig10044.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10044 1498..1773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10044.2.1

>prot_P-wetherbeei_contig10044.2.1 ID=prot_P-wetherbeei_contig10044.2.1|Name=mRNA_P-wetherbeei_contig10044.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
GEATKIGAASAVQRLTLAAQTSTVTAGGYRLELNGALTDCIAHDATAAEV
AAALAALPDVRGGVSVDGRVFVDDGHYYPVTEATAISENFAY
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mRNA from alignment at P-wetherbeei_contig10044:1498..1775+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10044.2.1 ID=mRNA_P-wetherbeei_contig10044.2.1|Name=mRNA_P-wetherbeei_contig10044.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=278bp|location=Sequence derived from alignment at P-wetherbeei_contig10044:1498..1775+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGAGGCCACGAAGATCGGAGCTGCATCGGCGGTGCAGCGGCTGACGCT
GGCGGCGCAGACGTCGACGGTGACCGCTGGCGGCTACCGGCTGGAACTCA
ACGGTGCGCTGACGGACTGCATCGCACATGACGCCACAGCGGCCGAGGTA
GCAGCGGCGCTGGCGGCGCTTCCTGACGTTCGCGGTGGCGTTTCTGTGGA
CGGGCGCGTCTTTGTGGACGACGGCCATTACTACCCCGTCACTGAAGCCA
CCGCCATTTCCGAAAATTTTGCCTATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10044:1498..1775+

>mRNA_P-wetherbeei_contig10044.2.1 ID=mRNA_P-wetherbeei_contig10044.2.1|Name=mRNA_P-wetherbeei_contig10044.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig10044:1498..1775+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGAGGCCACGAAGATCGGAGCTGCATCGGCGGTGCAGCGGCTGACGCT
GGCGGCGCAGACGTCGACGGTGACCGCTGGCGGCTACCGGCTGGAACTCA
ACGGTGCGCTGACGGACTGCATCGCACATGACGCCACAGCGGCCGAGGTA
GCAGCGGCGCTGGCGGCGCTTCCTGACGTTCGCGGTGGCGTTTCTGTGGA
CGGGCGCGTCTTTGTGGACGACGGCCATTACTACCCCGTCACTGAAGCCA
CCGCCATTTCCGAAAATTTTGCCTAT
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