mRNA_P-wetherbeei_contig10000.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10000.1.1
Unique NamemRNA_P-wetherbeei_contig10000.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A2E1JEI4_9ACTN (DNA-binding protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1JEI4_9ACTN)

HSP 1 Score: 104 bits (260), Expect = 3.850e-27
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTEDFEPFPVG 231
            W +DE    +L+GS C  CGAT FPAQ  CPRC S N E++ L  RG+LWTWT+QGF PKSPP+ G T++FEPF VG
Sbjct:   14 WPSDE---PKLIGSICLDCGATVFPAQSGCPRCTSDNTEKKELGTRGSLWTWTIQGFPPKSPPYQGDTDNFEPFGVG 87          
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A0C1RFE5_9ACTN (DNA-binding protein n=9 Tax=Actinobacteria TaxID=201174 RepID=A0A0C1RFE5_9ACTN)

HSP 1 Score: 104 bits (259), Expect = 6.100e-27
Identity = 48/77 (62.34%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTEDFEPFPVG 231
            W +D   D RL+GS C+ CGA  FP Q  CPRCAS N E R L  RG LWTWTVQG+ PKSPP+AG  E+FEPF VG
Sbjct:   14 WPSD---DPRLIGSQCQDCGAVIFPMQSGCPRCASDNTEPRELGTRGKLWTWTVQGYPPKSPPYAGDIENFEPFGVG 87          
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A2D8Y3B7_9GAMM (DNA-binding protein n=4 Tax=Bacteria TaxID=2 RepID=A0A2D8Y3B7_9GAMM)

HSP 1 Score: 100 bits (248), Expect = 2.550e-25
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTEDFEPFPVG 231
            W +D   D RLLGS C+ CGA  FP Q  CPRCAS + + + L  RG LWTWT+QG+ PKSPP+AG  E+FEPF VG
Sbjct:   14 WPSD---DPRLLGSQCQDCGAIIFPMQSGCPRCASDDTKPKELGTRGKLWTWTIQGYPPKSPPYAGDVENFEPFGVG 87          
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A538KDT7_9ACTN (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538KDT7_9ACTN)

HSP 1 Score: 100 bits (248), Expect = 2.840e-25
Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   31 LLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTED-FEPFPVG 231
            L+GS C  CG  TFP Q SCPRC ST+V ER LA RGTLWTWT+Q FAPKSPP+AG   D FEP+ VG
Sbjct:   24 LIGSACERCGTVTFPRQASCPRCTSTDVRERRLARRGTLWTWTIQCFAPKSPPYAGAAGDEFEPYGVG 91          
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A2E4XKB5_9ACTN (DNA-binding protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4XKB5_9ACTN)

HSP 1 Score: 96.7 bits (239), Expect = 5.890e-24
Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTEDFEPFPVG 231
            W +D     +L+GS C+ CGA  FPAQ  CPRC S N E + L  RG LWTWT+QGF PKSPP+ G  + FEPF VG
Sbjct:   14 WPSDS---PKLVGSECQDCGAIVFPAQSGCPRCTSDNTETKELGTRGKLWTWTIQGFPPKSPPYQGDVDAFEPFGVG 87          
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: UPI0003FE60EC (OB-fold domain-containing protein n=1 Tax=Solirubrobacter soli TaxID=363832 RepID=UPI0003FE60EC)

HSP 1 Score: 94.7 bits (234), Expect = 2.190e-23
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   22 DERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTEDFEPFPVG 231
            D  LLGS CRSCG  +FP   +CPRC ST+V+ER LA RGTLW+WT+Q F PKSPP+ G  E FEP+ VG
Sbjct:   12 DPVLLGSECRSCGTVSFPRLGACPRCTSTDVQERRLARRGTLWSWTIQRFRPKSPPYTG-PEAFEPYGVG 80          
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A537ZJ45_9ACTN (DNA-binding protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZJ45_9ACTN)

HSP 1 Score: 94.7 bits (234), Expect = 3.280e-23
Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVT-EDFEPFPVG 231
            W A E    +L+GS C +CG  TFP+Q SCPRCAST +EE LL+ RG LW WT Q F P SPP++G T EDF PF VG
Sbjct:   13 WPAHE---PQLIGSRCGACGIVTFPSQDSCPRCASTTMEEALLSRRGRLWAWTTQDFPPPSPPYSGPTGEDFVPFGVG 87          
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A7C2SAW5_9DELT (DNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2SAW5_9DELT)

HSP 1 Score: 93.2 bits (230), Expect = 1.260e-22
Identity = 46/78 (58.97%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVT-EDFEPFPVG 231
            W AD   D RL+GS C +CG  TFPAQ SCPRCAST +   LL  RG LW WT Q F P SPP+AG T E F P+ VG
Sbjct:   13 WPAD---DPRLIGSRCAACGIVTFPAQDSCPRCASTGMATHLLPRRGRLWAWTTQEFPPPSPPYAGPTGEAFAPYAVG 87          
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A3M1JQR4_9PROT (DNA-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JQR4_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 1.550e-22
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   28 RLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAG--VTEDFEPFPVG 231
            RL+GS CR+CG  TFP Q SCP C + + E+ LLA +GTLWTWT QGF PKSPP+AG    E F P+ VG
Sbjct:   22 RLIGSRCRACGEVTFPHQPSCPACCAEDTEDYLLARKGTLWTWTTQGFLPKSPPYAGPETPETFRPYGVG 91          
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A1H5NM61_9ACTN (Uncharacterized OB-fold protein, contains Zn-ribbon domain n=5 Tax=Streptomyces TaxID=1883 RepID=A0A1H5NM61_9ACTN)

HSP 1 Score: 90.1 bits (222), Expect = 2.580e-21
Identity = 44/77 (57.14%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTEDFEPFPVG 231
            W  DE    RL+GS C +CG  +FPA   C RCAST  +ERLLA RGTLWT+T Q F P SPP+ G  E FEP+ VG
Sbjct:   15 WPPDESTPLRLIGSGCTACGLVSFPAASDCVRCASTESKERLLADRGTLWTYTTQDFRPPSPPYDG-PETFEPYAVG 90          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E1JEI4_9ACTN3.850e-2759.74DNA-binding protein n=5 Tax=Acidimicrobiaceae bact... [more]
A0A0C1RFE5_9ACTN6.100e-2762.34DNA-binding protein n=9 Tax=Actinobacteria TaxID=2... [more]
A0A2D8Y3B7_9GAMM2.550e-2558.44DNA-binding protein n=4 Tax=Bacteria TaxID=2 RepID... [more]
A0A538KDT7_9ACTN2.840e-2567.65Zn-ribbon domain-containing OB-fold protein n=1 Ta... [more]
A0A2E4XKB5_9ACTN5.890e-2455.84DNA-binding protein n=1 Tax=Acidimicrobiaceae bact... [more]
UPI0003FE60EC2.190e-2362.86OB-fold domain-containing protein n=1 Tax=Solirubr... [more]
A0A537ZJ45_9ACTN3.280e-2358.97DNA-binding protein n=1 Tax=Actinomycetia bacteriu... [more]
A0A7C2SAW5_9DELT1.260e-2258.97DNA-binding protein n=1 Tax=Deltaproteobacteria ba... [more]
A0A3M1JQR4_9PROT1.550e-2260.00DNA-binding protein n=1 Tax=Alphaproteobacteria ba... [more]
A0A1H5NM61_9ACTN2.580e-2157.14Uncharacterized OB-fold protein, contains Zn-ribbo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10000contigP-wetherbeei_contig10000:2..232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1380390.JIAT01000005_gene5150
PFAMsDUF35_N,OB_aCoA_assoc
Model size231
Max annot lvl84995|Rubrobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.48e-24
EggNOG OGsCOG1545@1|root,COG1545@2|Bacteria,2HU6V@201174|Actinobacteria,4CTRR@84995|Rubrobacteria
DescriptionRubredoxin-like zinc ribbon domain (DUF35_N)
Cds size231
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185849.5027106-CDS-P-wetherbeei_contig10000:1..2321683185849.5027106-CDS-P-wetherbeei_contig10000:1..232Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10000 2..232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10000.1.1prot_P-wetherbeei_contig10000.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10000 2..232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10000.1.1

>prot_P-wetherbeei_contig10000.1.1 ID=prot_P-wetherbeei_contig10000.1.1|Name=mRNA_P-wetherbeei_contig10000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLW
TWTVQGFAPKSPPFAGVTEDFEPFPVG
back to top

mRNA from alignment at P-wetherbeei_contig10000:2..232-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10000.1.1 ID=mRNA_P-wetherbeei_contig10000.1.1|Name=mRNA_P-wetherbeei_contig10000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig10000:2..232- (Phaeothamnion wetherbeei SAG_119_79)
TGGCGCGCAGACGAGCGCGGGGACGAGCGGCTGCTCGGCTCGACGTGCCG CTCCTGTGGAGCCACGACCTTTCCCGCCCAGCAATCGTGCCCGCGATGTG CGTCGACGAACGTGGAGGAGCGGCTGCTCGCGGCGCGCGGCACGCTCTGG ACCTGGACCGTGCAGGGCTTCGCGCCGAAGTCGCCGCCGTTCGCCGGGGT CACGGAGGACTTCGAACCGTTTCCTGTCGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10000:2..232-

>mRNA_P-wetherbeei_contig10000.1.1 ID=mRNA_P-wetherbeei_contig10000.1.1|Name=mRNA_P-wetherbeei_contig10000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig10000:2..232- (Phaeothamnion wetherbeei SAG_119_79)
TGGCGCGCAGACGAGCGCGGGGACGAGCGGCTGCTCGGCTCGACGTGCCG
CTCCTGTGGAGCCACGACCTTTCCCGCCCAGCAATCGTGCCCGCGATGTG
CGTCGACGAACGTGGAGGAGCGGCTGCTCGCGGCGCGCGGCACGCTCTGG
ACCTGGACCGTGCAGGGCTTCGCGCCGAAGTCGCCGCCGTTCGCCGGGGT
CACGGAGGACTTCGAACCGTTTCCTGTCGGC
back to top