mRNA_P-wetherbeei_contig10000.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A2E1JEI4_9ACTN (DNA-binding protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1JEI4_9ACTN) HSP 1 Score: 104 bits (260), Expect = 3.850e-27 Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1 Query: 1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTEDFEPFPVG 231 W +DE +L+GS C CGAT FPAQ CPRC S N E++ L RG+LWTWT+QGF PKSPP+ G T++FEPF VG Sbjct: 14 WPSDE---PKLIGSICLDCGATVFPAQSGCPRCTSDNTEKKELGTRGSLWTWTIQGFPPKSPPYQGDTDNFEPFGVG 87
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A0C1RFE5_9ACTN (DNA-binding protein n=9 Tax=Actinobacteria TaxID=201174 RepID=A0A0C1RFE5_9ACTN) HSP 1 Score: 104 bits (259), Expect = 6.100e-27 Identity = 48/77 (62.34%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTEDFEPFPVG 231 W +D D RL+GS C+ CGA FP Q CPRCAS N E R L RG LWTWTVQG+ PKSPP+AG E+FEPF VG Sbjct: 14 WPSD---DPRLIGSQCQDCGAVIFPMQSGCPRCASDNTEPRELGTRGKLWTWTVQGYPPKSPPYAGDIENFEPFGVG 87
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A2D8Y3B7_9GAMM (DNA-binding protein n=4 Tax=Bacteria TaxID=2 RepID=A0A2D8Y3B7_9GAMM) HSP 1 Score: 100 bits (248), Expect = 2.550e-25 Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTEDFEPFPVG 231 W +D D RLLGS C+ CGA FP Q CPRCAS + + + L RG LWTWT+QG+ PKSPP+AG E+FEPF VG Sbjct: 14 WPSD---DPRLLGSQCQDCGAIIFPMQSGCPRCASDDTKPKELGTRGKLWTWTIQGYPPKSPPYAGDVENFEPFGVG 87
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A538KDT7_9ACTN (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538KDT7_9ACTN) HSP 1 Score: 100 bits (248), Expect = 2.840e-25 Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = 1 Query: 31 LLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTED-FEPFPVG 231 L+GS C CG TFP Q SCPRC ST+V ER LA RGTLWTWT+Q FAPKSPP+AG D FEP+ VG Sbjct: 24 LIGSACERCGTVTFPRQASCPRCTSTDVRERRLARRGTLWTWTIQCFAPKSPPYAGAAGDEFEPYGVG 91
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A2E4XKB5_9ACTN (DNA-binding protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4XKB5_9ACTN) HSP 1 Score: 96.7 bits (239), Expect = 5.890e-24 Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 1 Query: 1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTEDFEPFPVG 231 W +D +L+GS C+ CGA FPAQ CPRC S N E + L RG LWTWT+QGF PKSPP+ G + FEPF VG Sbjct: 14 WPSDS---PKLVGSECQDCGAIVFPAQSGCPRCTSDNTETKELGTRGKLWTWTIQGFPPKSPPYQGDVDAFEPFGVG 87
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: UPI0003FE60EC (OB-fold domain-containing protein n=1 Tax=Solirubrobacter soli TaxID=363832 RepID=UPI0003FE60EC) HSP 1 Score: 94.7 bits (234), Expect = 2.190e-23 Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1 Query: 22 DERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTEDFEPFPVG 231 D LLGS CRSCG +FP +CPRC ST+V+ER LA RGTLW+WT+Q F PKSPP+ G E FEP+ VG Sbjct: 12 DPVLLGSECRSCGTVSFPRLGACPRCTSTDVQERRLARRGTLWSWTIQRFRPKSPPYTG-PEAFEPYGVG 80
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A537ZJ45_9ACTN (DNA-binding protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZJ45_9ACTN) HSP 1 Score: 94.7 bits (234), Expect = 3.280e-23 Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 1 Query: 1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVT-EDFEPFPVG 231 W A E +L+GS C +CG TFP+Q SCPRCAST +EE LL+ RG LW WT Q F P SPP++G T EDF PF VG Sbjct: 13 WPAHE---PQLIGSRCGACGIVTFPSQDSCPRCASTTMEEALLSRRGRLWAWTTQDFPPPSPPYSGPTGEDFVPFGVG 87
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A7C2SAW5_9DELT (DNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2SAW5_9DELT) HSP 1 Score: 93.2 bits (230), Expect = 1.260e-22 Identity = 46/78 (58.97%), Postives = 51/78 (65.38%), Query Frame = 1 Query: 1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVT-EDFEPFPVG 231 W AD D RL+GS C +CG TFPAQ SCPRCAST + LL RG LW WT Q F P SPP+AG T E F P+ VG Sbjct: 13 WPAD---DPRLIGSRCAACGIVTFPAQDSCPRCASTGMATHLLPRRGRLWAWTTQEFPPPSPPYAGPTGEAFAPYAVG 87
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A3M1JQR4_9PROT (DNA-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JQR4_9PROT) HSP 1 Score: 93.2 bits (230), Expect = 1.550e-22 Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 1 Query: 28 RLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAG--VTEDFEPFPVG 231 RL+GS CR+CG TFP Q SCP C + + E+ LLA +GTLWTWT QGF PKSPP+AG E F P+ VG Sbjct: 22 RLIGSRCRACGEVTFPHQPSCPACCAEDTEDYLLARKGTLWTWTTQGFLPKSPPYAGPETPETFRPYGVG 91
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Match: A0A1H5NM61_9ACTN (Uncharacterized OB-fold protein, contains Zn-ribbon domain n=5 Tax=Streptomyces TaxID=1883 RepID=A0A1H5NM61_9ACTN) HSP 1 Score: 90.1 bits (222), Expect = 2.580e-21 Identity = 44/77 (57.14%), Postives = 51/77 (66.23%), Query Frame = 1 Query: 1 WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWTWTVQGFAPKSPPFAGVTEDFEPFPVG 231 W DE RL+GS C +CG +FPA C RCAST +ERLLA RGTLWT+T Q F P SPP+ G E FEP+ VG Sbjct: 15 WPPDESTPLRLIGSGCTACGLVSFPAASDCVRCASTESKERLLADRGTLWTYTTQDFRPPSPPYDG-PETFEPYAVG 90 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10000.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig10000.1.1 >prot_P-wetherbeei_contig10000.1.1 ID=prot_P-wetherbeei_contig10000.1.1|Name=mRNA_P-wetherbeei_contig10000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp WRADERGDERLLGSTCRSCGATTFPAQQSCPRCASTNVEERLLAARGTLWback to top mRNA from alignment at P-wetherbeei_contig10000:2..232- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig10000.1.1 ID=mRNA_P-wetherbeei_contig10000.1.1|Name=mRNA_P-wetherbeei_contig10000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig10000:2..232- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig10000:2..232- >mRNA_P-wetherbeei_contig10000.1.1 ID=mRNA_P-wetherbeei_contig10000.1.1|Name=mRNA_P-wetherbeei_contig10000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig10000:2..232- (Phaeothamnion wetherbeei SAG_119_79)back to top |