prot_P-canaliculata_contig100.48.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig100.48.1
Unique Nameprot_P-canaliculata_contig100.48.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length516
Homology
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BLAST of mRNA_P-canaliculata_contig100.48.1 vs. uniprot
Match: D8LT37_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT37_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 1.670e-80
Identity = 176/389 (45.24%), Postives = 220/389 (56.56%), Query Frame = 0 
Query:  117 MAGLDKKALALQLADWDPIEKVQVLTAWEAAHPKMSADDLVSLIRQDQARGGDKLGSLWRCSLSSIKRELEMEAKLKWDVHRWKGRTVSADMLYSSRLE-SRGAIDVYRSPHESPFGFAPPRKTGLN-DRRRWAPERNVRAGTKTEKPPSREPCGSFEVSDATGACTSINISSARSVINEADNEALVKKTPPRHHRHQSPAGLGENTGVRGDLPPRLTLPTPTYAGREFDPCRLCKACTIEWRSAIVLRGHDLQLWHAVDDERRALLELQRRNDIFKAEWAKTEWRDRQVSELLRFIFEANLDSFSRHSLEERGKAARSTQSGELRRMLDLKLSYKAAGKNGAAKDEGLKRLSERRARTWASTLRLKASLNLDRHYASLEPGDFPRHSR 503
            M+  DKK L LQLADW+P+ KV+V+ AWEA  P M+A  L+ LIR++QARG +   SLW+CSL  +KR +E+EA++K   HR K RT+ A  LY  R++ S G  D Y S HES F F   R   L  D   W  E    AG            G+ E +   G                       +KT     R  + +G G+                         P + C       RSAI+  GHDL+LWH VD ERRALL  QRR D+ KA WA+ E +DRQVSELLR I EANLD+FSRHSLE+R  AA++ Q  ++RRMLDLKLS+ AA  +GA KDEGLKRL+ER A  WA+ L+LKA+LN+DRHYASLEPG  P   R
Sbjct:    1 MSQQDKKILLLQLADWNPVRKVKVMKAWEATDPAMTAGFLLELIREEQARG-EGPDSLWQCSLCPVKRNVEVEARMKRGEHRRKDRTIDAGSLYDYRVKGSGGGPDTYSSAHESLFEFKQQRHQHLQQDESPW--ETGGTAGG----------AGAAEGTKPLGG---------------------AQKTRYVEDRAGTASGAGDLAS---------------------SPAKECLD-----RSAIISSGHDLELWHTVDHERRALLTGQRRADVLKARWAERERKDRQVSELLRLISEANLDAFSRHSLEDRAMAAQNLQVVDVRRMLDLKLSHSAAVNSGACKDEGLKRLNEREATAWAAKLKLKAALNMDRHYASLEPGGLPASLR 329
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100.48.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT37_ECTSI1.670e-8045.24C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 373..393

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100contigP-canaliculata_contig100:33169..37909 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100.48.1mRNA_P-canaliculata_contig100.48.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig100 32500..37957 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig100.48.1 ID=prot_P-canaliculata_contig100.48.1|Name=mRNA_P-canaliculata_contig100.48.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=516bp
MTSSMGSVDAKARNILQEVVHLVATSGKDTRLPVKKILPHACANRDVDRC
VSLLETMVSLGQSAALQLLWLYERYDVPDAGGSMTKCAYDHFGRDLGKMR
HLFAFLAVRKIEEIIGMAGLDKKALALQLADWDPIEKVQVLTAWEAAHPK
MSADDLVSLIRQDQARGGDKLGSLWRCSLSSIKRELEMEAKLKWDVHRWK
GRTVSADMLYSSRLESRGAIDVYRSPHESPFGFAPPRKTGLNDRRRWAPE
RNVRAGTKTEKPPSREPCGSFEVSDATGACTSINISSARSVINEADNEAL
VKKTPPRHHRHQSPAGLGENTGVRGDLPPRLTLPTPTYAGREFDPCRLCK
ACTIEWRSAIVLRGHDLQLWHAVDDERRALLELQRRNDIFKAEWAKTEWR
DRQVSELLRFIFEANLDSFSRHSLEERGKAARSTQSGELRRMLDLKLSYK
AAGKNGAAKDEGLKRLSERRARTWASTLRLKASLNLDRHYASLEPGDFPR
HSRGGTIRPRSASIF*
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