mRNA_P-canaliculata_contig100.48.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100.48.1 vs. uniprot
Match: D8LT37_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT37_ECTSI) HSP 1 Score: 271 bits (692), Expect = 5.530e-78 Identity = 176/389 (45.24%), Postives = 220/389 (56.56%), Query Frame = 1 Query: 397 MAGLDKKALALQLADWDPIEKVQVLTAWEAAHPKMSADDLVSLIRQDQARGGDKLGSLWRCSLSSIKRELEMEAKLKWDVHRWKGRTVSADMLYSSRLE-SRGAIDVYRSPHESPFGFAPPRKTGLN-DRRRWAPERNVRAGTKTEKPPSREPCGSFEVSDATGACTSINISSARSVINEADNEALVKKTPPRHHRHQSPAGLGENTGVRGDLPPRLTLPTPTYAGREFDPCRLCKACTIEWRSAIVLRGHDLQLWHAVDDERRALLELQRRNDIFKAEWAKTEWRDRQVSELLRFIFEANLDSFSRHSLEERGKAARSTQSGELRRMLDLKLSYKAAGKNGAAKDEGLKRLSERRARTWASTLRLKASLNLDRHYASLEPGDFPRHSR 1557
M+ DKK L LQLADW+P+ KV+V+ AWEA P M+A L+ LIR++QARG + SLW+CSL +KR +E+EA++K HR K RT+ A LY R++ S G D Y S HES F F R L D W E AG G+ E + G +KT R + +G G+ P + C RSAI+ GHDL+LWH VD ERRALL QRR D+ KA WA+ E +DRQVSELLR I EANLD+FSRHSLE+R AA++ Q ++RRMLDLKLS+ AA +GA KDEGLKRL+ER A WA+ L+LKA+LN+DRHYASLEPG P R
Sbjct: 1 MSQQDKKILLLQLADWNPVRKVKVMKAWEATDPAMTAGFLLELIREEQARG-EGPDSLWQCSLCPVKRNVEVEARMKRGEHRRKDRTIDAGSLYDYRVKGSGGGPDTYSSAHESLFEFKQQRHQHLQQDESPW--ETGGTAGG----------AGAAEGTKPLGG---------------------AQKTRYVEDRAGTASGAGDLAS---------------------SPAKECLD-----RSAIISSGHDLELWHTVDHERRALLTGQRRADVLKARWAERERKDRQVSELLRLISEANLDAFSRHSLEDRAMAAQNLQVVDVRRMLDLKLSHSAAVNSGACKDEGLKRLNEREATAWAAKLKLKAALNMDRHYASLEPGGLPASLR 329 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100.48.1 >prot_P-canaliculata_contig100.48.1 ID=prot_P-canaliculata_contig100.48.1|Name=mRNA_P-canaliculata_contig100.48.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=516bp MTSSMGSVDAKARNILQEVVHLVATSGKDTRLPVKKILPHACANRDVDRCback to top mRNA from alignment at P-canaliculata_contig100:32500..37957- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100.48.1 ID=mRNA_P-canaliculata_contig100.48.1|Name=mRNA_P-canaliculata_contig100.48.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5458bp|location=Sequence derived from alignment at P-canaliculata_contig100:32500..37957- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100:32500..37957- >mRNA_P-canaliculata_contig100.48.1 ID=mRNA_P-canaliculata_contig100.48.1|Name=mRNA_P-canaliculata_contig100.48.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3096bp|location=Sequence derived from alignment at P-canaliculata_contig100:32500..37957- (Pelvetia canaliculata dioecious)back to top |