mRNA_P-canaliculata_contig102527.392.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102527.392.1
Unique NamemRNA_P-canaliculata_contig102527.392.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: D7G0W6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W6_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 6.990e-44
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 1 
Query:    1 VHATMPTRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 243
            V+  +  RNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVY+DIYDAKAAVDHLSGFNVCGRYLIVLYYQ   M
Sbjct:    7 VNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQPAKM 87
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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A835YN30_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN30_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.530e-42
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 VHATMPTRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQA 234
            V+  +  RNLPFKI+ADEMYDIFGKYGAIRQIRLGD+ DTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQ+
Sbjct:   16 VNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQS 93
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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A7S3HNH0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNH0_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.600e-41
Identity = 67/81 (82.72%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:    1 VHATMPTRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 243
            V+  +  RNLPFKI+A+EMYDIFGKYGAIRQIRLGD+QDTRGTAFVVYEDIYDAK AVDHLSGFNVC RYLIVLYYQ   M
Sbjct:    4 VNRVLYVRNLPFKITAEEMYDIFGKYGAIRQIRLGDKQDTRGTAFVVYEDIYDAKNAVDHLSGFNVCNRYLIVLYYQQTKM 84
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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A7S2C985_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C985_9STRA)

HSP 1 Score: 139 bits (349), Expect = 8.810e-41
Identity = 66/81 (81.48%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 VHATMPTRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 243
            V+  +  RNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQA  M
Sbjct:   17 VNRVLYIRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQAARM 97
[Close]
BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A7S2DAY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY0_9STRA)

HSP 1 Score: 139 bits (349), Expect = 9.080e-41
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 VHATMPTRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 243
            V+  +  RNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQA  M
Sbjct:   19 VNRVLYVRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRM 99
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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A7S2S8J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J7_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.950e-40
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 VHATMPTRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 243
            V+  +  RNLPFKISA+E+YDIFGKYGA+RQ+RLGD+ DTRGTAFVVYEDIYDAK AVDHL+GFNVCGRYL+VLYYQA  M
Sbjct:   21 VNRVVYVRNLPFKISAEEIYDIFGKYGALRQVRLGDKPDTRGTAFVVYEDIYDAKNAVDHLNGFNVCGRYLVVLYYQASKM 101
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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: M4BTL1_HYAAE (RRM domain-containing protein n=13 Tax=Peronosporaceae TaxID=4777 RepID=M4BTL1_HYAAE)

HSP 1 Score: 137 bits (346), Expect = 2.230e-40
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 VHATMPTRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 243
            V+  +  RNLPFKISA+E+YDIFGKYGAIRQ+RLG   DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQA  M
Sbjct:   16 VNRVLYVRNLPFKISAEELYDIFGKYGAIRQVRLGVNNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQANKM 96
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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A6S9GFW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GFW4_HETAK)

HSP 1 Score: 137 bits (346), Expect = 2.370e-40
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:    1 VHATMPTRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 243
            V+  +  RNLPFKI+A+EMYDIFGKYGAIRQIR+GD+ DT+GTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQ   M
Sbjct:   17 VNRVLYVRNLPFKITAEEMYDIFGKYGAIRQIRIGDKPDTKGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPTRM 97
[Close]
BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A067D1A1_SAPPC (Pre-mRNA branch site p14-like protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D1A1_SAPPC)

HSP 1 Score: 137 bits (345), Expect = 2.980e-40
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 VHATMPTRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 243
            V+  +  RNLPFKIS+DEMYDIFGKYGAIRQIRLG   DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQA  +
Sbjct:   19 VNRVLYVRNLPFKISSDEMYDIFGKYGAIRQIRLGVNADTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQANRV 99
[Close]
BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: K3WDB4_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDB4_GLOUD)

HSP 1 Score: 137 bits (345), Expect = 3.270e-40
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 VHATMPTRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 243
            V+  +  RNLPFKIS++EMYDIFGKYGA+RQIRLG   DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQA  M
Sbjct:   19 VNRILYVRNLPFKISSEEMYDIFGKYGAVRQIRLGVNNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQANRM 99
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0W6_ECTSI6.990e-4487.65RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YN30_9STRA3.530e-4287.18RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3HNH0_9STRA2.600e-4182.72Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2C985_9STRA8.810e-4181.48Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2DAY0_9STRA9.080e-4180.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2S8J7_9STRA1.950e-4079.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
M4BTL1_HYAAE2.230e-4081.48RRM domain-containing protein n=13 Tax=Peronospora... [more]
A0A6S9GFW4_HETAK2.370e-4080.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A067D1A1_SAPPC2.980e-4081.48Pre-mRNA branch site p14-like protein n=4 Tax=Sapr... [more]
K3WDB4_GLOUD3.270e-4081.48RRM domain-containing protein n=1 Tax=Globisporang... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102527contigP-canaliculata_contig102527:190..684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue3.3e-33
Seed eggNOG ortholog2880.D7G0W6
Preferred nameSF3B6
KEGG rclassRC00632,RC00680
KEGG koko:K01464,ko:K12833
KEGG ReactionR02269,R03055,R08227
KEGG Pathwayko00240,ko00410,ko00770,ko00983,ko01100,ko03040,map00240,map00410,map00770,map00983,map01100,map03040
KEGG ModuleM00046,M00352
GOsGO:0000375,GO:0000377,GO:0000398,GO:0001701,GO:0001824,GO:0001825,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048646,GO:0048856,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0114@1,KOG0114@2759
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-23_002040.1
EC3.5.2.2
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102527.392.1prot_P-canaliculata_contig102527.392.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102527 190..672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.9272857-CDS-P-canaliculata_contig102527:189..3391622815598.9272857-CDS-P-canaliculata_contig102527:189..339Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102527 190..339 -
1693494158.6090705-CDS-P-canaliculata_contig102527:189..3391693494158.6090705-CDS-P-canaliculata_contig102527:189..339Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102527 190..339 -
1622815598.9394293-CDS-P-canaliculata_contig102527:591..6721622815598.9394293-CDS-P-canaliculata_contig102527:591..672Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102527 592..672 -
1693494158.625119-CDS-P-canaliculata_contig102527:591..6721693494158.625119-CDS-P-canaliculata_contig102527:591..672Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102527 592..672 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.9515846-UTR-P-canaliculata_contig102527:672..6841622815598.9515846-UTR-P-canaliculata_contig102527:672..684Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102527 673..684 -
1693494158.6368396-UTR-P-canaliculata_contig102527:672..6841693494158.6368396-UTR-P-canaliculata_contig102527:672..684Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102527 673..684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102527.392.1

>prot_P-canaliculata_contig102527.392.1 ID=prot_P-canaliculata_contig102527.392.1|Name=mRNA_P-canaliculata_contig102527.392.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=77bp
MPTRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDA
KAAVDHLSGFNVCGRYLIVLYYQARNM
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mRNA from alignment at P-canaliculata_contig102527:190..684-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102527.392.1 ID=mRNA_P-canaliculata_contig102527.392.1|Name=mRNA_P-canaliculata_contig102527.392.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at P-canaliculata_contig102527:190..684- (Pelvetia canaliculata dioecious)
GTCCATGCCACCATGCCCACCAGGAATCTTCCTTTCAAGATTTCCGCGGA
CGAAATGTACGACATCTTCGGCAAATACGGCGCGATTCGACAGGTGAGGA
CGATGTTCACGTGGCGTCTTTTTTTAAAGACAACAACCGACAATTGCTAA
AGCAGACAGGAGGAGCCTCGCCTCCCGTAAGGGAAAAAATGATTATGCAC
AACCGTGATGTTCCGTCAGAAGAAACCAATAAACACCCGACTGGCTCTTG
GATACAAGTGTTTTGCTGGAAGCTTGGCATGTAAAAAATGATGCCGTCAT
ATGCCTTCTCTACTCTCGACTCCCGCGGCTATCTGTGGCGACCAGATTCG
GTTGGGCGACAGGCAGGACACACGGGGGACGGCGTTCGTTGTGTACGAGG
ATATCTACGATGCCAAGGCGGCGGTAGACCATCTTAGCGGCTTCAACGTC
TGCGGTCGGTATCTCATCGTCCTCTACTACCAGGCACGGAATATG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102527:190..684-

>mRNA_P-canaliculata_contig102527.392.1 ID=mRNA_P-canaliculata_contig102527.392.1|Name=mRNA_P-canaliculata_contig102527.392.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at P-canaliculata_contig102527:190..684- (Pelvetia canaliculata dioecious)
ATGCCCACCAGGAATCTTCCTTTCAAGATTTCCGCGGACGAAATGTACGA
CATCTTCGGCAAATACGGCGCGATTCGACAGATGCCCACCAGGAATCTTC
CTTTCAAGATTTCCGCGGACGAAATGTACGACATCTTCGGCAAATACGGC
GCGATTCGACAGATTCGGTTGGGCGACAGGCAGGACACACGGGGGACGGC
GTTCGTTGTGTACGAGGATATCTACGATGCCAAGGCGGCGGTAGACCATC
TTAGCGGCTTCAACGTCTGCGGTCGGTATCTCATCGTCCTCTACTACCAG
GCACGGAATATGATTCGGTTGGGCGACAGGCAGGACACACGGGGGACGGC
GTTCGTTGTGTACGAGGATATCTACGATGCCAAGGCGGCGGTAGACCATC
TTAGCGGCTTCAACGTCTGCGGTCGGTATCTCATCGTCCTCTACTACCAG
GCACGGAATATG
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