prot_P-canaliculata_contig102527.392.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig102527.392.1
Unique Name	prot_P-canaliculata_contig102527.392.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	77

Homology

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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: D7G0W6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W6_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 8.400e-44
Identity = 70/75 (93.33%), Postives = 71/75 (94.67%), Query Frame = 0

Query:    3 TRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 77
             RNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVY+DIYDAKAAVDHLSGFNVCGRYLIVLYYQ   M
Sbjct:   13 VRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQPAKM 87

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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A835YN30_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN30_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.240e-42
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0

Query:    3 TRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQA 74
             RNLPFKI+ADEMYDIFGKYGAIRQIRLGD+ DTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQ+
Sbjct:   22 VRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQS 93

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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A7S3HNH0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNH0_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.440e-41
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 0

Query:    3 TRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 77
             RNLPFKI+A+EMYDIFGKYGAIRQIRLGD+QDTRGTAFVVYEDIYDAK AVDHLSGFNVC RYLIVLYYQ   M
Sbjct:   10 VRNLPFKITAEEMYDIFGKYGAIRQIRLGDKQDTRGTAFVVYEDIYDAKNAVDHLSGFNVCNRYLIVLYYQQTKM 84

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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A7S2C985_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C985_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.500e-40
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 0

Query:    4 RNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 77
            RNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQA  M
Sbjct:   24 RNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQAARM 97

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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A7S2DAY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY0_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.550e-40
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0

Query:    3 TRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 77
             RNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQA  M
Sbjct:   25 VRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRM 99

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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A7S2S8J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J7_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.340e-40
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 0

Query:    3 TRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 77
             RNLPFKISA+E+YDIFGKYGA+RQ+RLGD+ DTRGTAFVVYEDIYDAK AVDHL+GFNVCGRYL+VLYYQA  M
Sbjct:   27 VRNLPFKISAEEIYDIFGKYGALRQVRLGDKPDTRGTAFVVYEDIYDAKNAVDHLNGFNVCGRYLVVLYYQASKM 101

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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: M4BTL1_HYAAE (RRM domain-containing protein n=13 Tax=Peronosporaceae TaxID=4777 RepID=M4BTL1_HYAAE)

HSP 1 Score: 137 bits (344), Expect = 3.810e-40
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    3 TRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 77
             RNLPFKISA+E+YDIFGKYGAIRQ+RLG   DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQA  M
Sbjct:   22 VRNLPFKISAEELYDIFGKYGAIRQVRLGVNNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQANKM 96

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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: K3WDB4_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDB4_GLOUD)

HSP 1 Score: 137 bits (344), Expect = 3.930e-40
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    3 TRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 77
             RNLPFKIS++EMYDIFGKYGA+RQIRLG   DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQA  M
Sbjct:   25 VRNLPFKISSEEMYDIFGKYGAVRQIRLGVNNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQANRM 99

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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A6S9GFW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GFW4_HETAK)

HSP 1 Score: 137 bits (344), Expect = 4.050e-40
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0

Query:    3 TRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 77
             RNLPFKI+A+EMYDIFGKYGAIRQIR+GD+ DT+GTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQ   M
Sbjct:   23 VRNLPFKITAEEMYDIFGKYGAIRQIRIGDKPDTKGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPTRM 97

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BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Match: A0A067D1A1_SAPPC (Pre-mRNA branch site p14-like protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D1A1_SAPPC)

HSP 1 Score: 136 bits (343), Expect = 5.100e-40
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    3 TRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQARNM 77
             RNLPFKIS+DEMYDIFGKYGAIRQIRLG   DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQA  +
Sbjct:   25 VRNLPFKISSDEMYDIFGKYGAIRQIRLGVNADTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQANRV 99

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig102527.392.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G0W6_ECTSI	8.400e-44	93.33	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A835YN30_9STRA	4.240e-42	93.06	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S3HNH0_9STRA	4.440e-41	88.00	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]
A0A7S2C985_9STRA	1.500e-40	87.84	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S2DAY0_9STRA	1.550e-40	85.33	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2S8J7_9STRA	2.340e-40	84.00	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
M4BTL1_HYAAE	3.810e-40	86.67	RRM domain-containing protein n=13 Tax=Peronospora...	[more]
K3WDB4_GLOUD	3.930e-40	86.67	RRM domain-containing protein n=1 Tax=Globisporang...	[more]
A0A6S9GFW4_HETAK	4.050e-40	85.33	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A067D1A1_SAPPC	5.100e-40	86.67	Pre-mRNA branch site p14-like protein n=4 Tax=Sapr...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 4..70 e-value: 1.7E-9 score: 47.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..67 e-value: 6.1E-14 score: 51.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..74 score: 13.857
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..77 e-value: 7.7E-18 score: 66.5
None	No IPR available	PANTHER	PTHR12785:SF7	SPLICING FACTOR 3B SUBUNIT 6-LIKE PROTEIN	coord: 4..74
None	No IPR available	PANTHER	PTHR12785	splicing factor 3B	coord: 4..74
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..76

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig102527	contig	P-canaliculata_contig102527:190..672 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig102527.392.1	mRNA_P-canaliculata_contig102527.392.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig102527 190..684 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig102527.392.1 ID=prot_P-canaliculata_contig102527.392.1|Name=mRNA_P-canaliculata_contig102527.392.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=77bp
MPTRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDA
KAAVDHLSGFNVCGRYLIVLYYQARNM

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf