mRNA_P-canaliculata_contig10247.387.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10247.387.1
Unique NamemRNA_P-canaliculata_contig10247.387.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10247.387.1 vs. uniprot
Match: D7FMW6_ECTSI (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW6_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 3.380e-108
Identity = 178/244 (72.95%), Postives = 199/244 (81.56%), Query Frame = 1 
Query:    1 PQGHAFR---GRTGWAVALRYVSRAHRSSTSRV-LALRRPAPGAGGMCRTAKMMSETTTTTTDEPGVEAAPRGELTELARLEIRVGNILEISRHPDADSLYVEKVDIGAGEEEGPRTIVSGLVNFCQESDLLGRNVVVLCNLKPVSMKGVLSAGMLLCSSNEDHTKVEPLSPPTGVPLGELVTFEGHLSSPVEAGNRAGKAWKKASKTLEVDDTKVAKFTGETLPAHFMTSKGPITSPLPGPIS 720
            P G+A R   G+T  A+ALR +SRA  +S+ R   ALRRP        RT  MMS+   T  +E    AAP GELTELARLEIR+G I+EI+RHPDADSLYVEKVD+G GEEEGPRTIVSGLVNFC+ESDLLGR+VVVLCNLKPV+MKGV SAGMLLCSSNEDH+KVEPL PP GVPLGELVTF+GHL SPV+AGNRAGKAWK+ASKTL VDD++ AKFTGE LPA FMTSKGPITSPLPG IS
Sbjct:   22 PGGNAIRASTGKTNAAMALRCLSRARLTSSVRPQAALRRPTA-----VRTMMMMSDAAVT--EEEAAPAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPRTIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAWKRASKTLAVDDSEEAKFTGEKLPATFMTSKGPITSPLPGSIS 258
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BLAST of mRNA_P-canaliculata_contig10247.387.1 vs. uniprot
Match: A0A835YNH3_9STRA (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH3_9STRA)

HSP 1 Score: 250 bits (639), Expect = 1.310e-78
Identity = 127/176 (72.16%), Postives = 146/176 (82.95%), Query Frame = 1 
Query:  193 AAPRGELTELARLEIRVGNILEISRHPDADSLYVEKVDIGAGEEEGPRTIVSGLVNFCQESDLLGRNVVVLCNLKPVSMKGVLSAGMLLCSSNEDHTKVEPLSPPTGVPLGELVTFEGHLSSPVEAGNRAGKAWKKASKTLEVDDTKVAKFTGETLPAHFMTSKGPITSPLPGPIS 720
            AAP G+LTELARLE+RVG I+EI RHPDAD LYVEK+DIG  E  GPRTIVSGLV +C E+DLL R+VV+L NLKPV+M+GV SAGM+LCSSN DHT+V PL PP G PLGELVTFEGHL++PVEAGNRA KAWKK +KT+ V +  VA+FT E LPA F TSKG +TSPLPG IS
Sbjct:   71 AAPVGQLTELARLEMRVGRIVEIGRHPDADGLYVEKIDIG--EPAGPRTIVSGLVAYCSEADLLNRDVVILANLKPVNMRGVESAGMVLCSSNADHTQVAPLVPPEGTPLGELVTFEGHLAAPVEAGNRAVKAWKKVAKTVAVGEDGVARFTDEALPAAFATSKGVVTSPLPGNIS 244
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BLAST of mRNA_P-canaliculata_contig10247.387.1 vs. uniprot
Match: W7U6C4_9STRA (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA)

HSP 1 Score: 211 bits (537), Expect = 8.870e-62
Identity = 109/178 (61.24%), Postives = 135/178 (75.84%), Query Frame = 1 
Query:  187 VEAAPRGELTELARLEIRVGNILEISRHPDADSLYVEKVDIGAGEEEGPRTIVSGLVNFCQESDLLGRNVVVLCNLKPVSMKGVLSAGMLLCSSNEDHTKVEPLSPPTGVPLGELVTFEGHLSSPVEAGNRAGKAWKKASKTLEVDDTKVAKFTGETLPAHFMTSKGPITSPLPGPIS 720
            V  AP+GELTEL+RLEIR G ILEISRHP+AD LYVEK+D+G  E +GPRTIVSGLV +  E +LLGR VVVL NLKP ++KG+ S GMLLC+SNEDHT V+PLSPP GV LGEL+TFEGH ++P   GNRAGKA+ + ++ L   +  +A + G      FMTSKGP+T+ + G IS
Sbjct:  189 VVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLG--EADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKG----IPFMTSKGPVTTGMAGSIS 360
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BLAST of mRNA_P-canaliculata_contig10247.387.1 vs. uniprot
Match: A0A7S0XDL6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL6_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.290e-56
Identity = 99/171 (57.89%), Postives = 124/171 (72.51%), Query Frame = 1 
Query:  208 ELTELARLEIRVGNILEISRHPDADSLYVEKVDIGAGEEEGPRTIVSGLVNFCQESDLLGRNVVVLCNLKPVSMKGVLSAGMLLCSSNEDHTKVEPLSPPTGVPLGELVTFEGHLSSPVEAGNRAGKAWKKASKTLEVDDTKVAKFTGETLPAHFMTSKGPITSPLPGPIS 720
            ELTEL+RLEIRVG I+E+ RHP+AD LYVEK+D+G  E  GPRTIVSGLV FC    LL  NV+VLCNLKP ++KG+ S GM+LC++++D TKV+PL PP   P+G+L+TFEGHLS PVE GNRA KA+ K +    V++  VA + G      F T  GP+TS L G IS
Sbjct:   51 ELTELSRLEIRVGKIVEVGRHPEADGLYVEKIDLG--EPTGPRTIVSGLVQFCTVDRLLNNNVIVLCNLKPRALKGITSNGMVLCTTSKDETKVDPLIPPPDAPIGQLITFEGHLSEPVEPGNRATKAFTKIADGFYVNEQGVATYNG----IPFSTPNGPVTSTLIGKIS 215
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BLAST of mRNA_P-canaliculata_contig10247.387.1 vs. uniprot
Match: A0A7S3M138_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M138_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.390e-56
Identity = 110/177 (62.15%), Postives = 124/177 (70.06%), Query Frame = 1 
Query:  193 AAPRGELTELARLEIRVGNILEISRHPDADSLYVEKVDIGAGEEEGPRTIVSGLVNFCQESDLLGRNVVVLCNLKPVSMKGVLSAGMLLCSSNEDHTKVEPLSPPTGVPLGELVTFEGHLSSPVEAGNRAGKAWKKASKTLEVDDTKVAKFTGETLPAHFMTSKGPITSP-LPGPIS 720
            A P G+  E   LEIRVG ILEI +HP+ADSLYVEKVD+G  E  GPRTIVSGLV FC    LL R+VVVLCNLKP + KG+ S GMLLCSSN+   KVEPL PP GVP GELV+FEGH+  P E GNRA KA+ K S    V D+ +A + G      FMTSKGPITS  L GPIS
Sbjct:   67 AKPSGDSIEA--LEIRVGKILEIGKHPEADSLYVEKVDLG--ESSGPRTIVSGLVEFCTAEYLLNRDVVVLCNLKPRAFKGINSQGMLLCSSNKADGKVEPLIPPAGVPAGELVSFEGHVIKPEEPGNRATKAYTKVSGDFVVSDSGIATYKG----IPFMTSKGPITSTILKGPIS 235
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BLAST of mRNA_P-canaliculata_contig10247.387.1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 187 bits (475), Expect = 8.070e-54
Identity = 100/172 (58.14%), Postives = 127/172 (73.84%), Query Frame = 1 
Query:  211 LTELARLEIRVGNILEISRHPDADSLYVEKVDIGAGEEEGPRTIVSGLVNFCQESDLLGRNVVVLCNLKPVSMKGVLSAGMLLCSSNEDHTKVEPLSPPTGVPLGELVTFEGHLSSPVEAGNRAGKAWKKASKTLEVDDTKVAKFTGETLPAHFMTSKGPITSP--LPGPIS 720
            LTEL+RLEIRVG I++  +HP+ADSLYVE+VD+G  +E G R IVSGLV+F    +++ R V+VLCNLKP +M+G+ S GMLLC+SNEDH++V+PL+ P GVP+G LVTFEGH S P  AGNRA KA+ K +K+L  D T VA F  E +P  F T  GP  SP  L GP+S
Sbjct:   92 LTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVG--DESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDATGVAMF--EQVP--FATPSGPCFSPKKLVGPVS 257
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BLAST of mRNA_P-canaliculata_contig10247.387.1 vs. uniprot
Match: A0A7S2R5F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5F0_9STRA)

HSP 1 Score: 186 bits (473), Expect = 9.350e-54
Identity = 94/172 (54.65%), Postives = 127/172 (73.84%), Query Frame = 1 
Query:  190 EAAPRGELTELARLEIRVGNILEISRHPDADSLYVEKVDIGAGEEEGPRTIVSGLVNFCQESDLLGRNVVVLCNLKPVSMKGVLSAGMLLCSSNEDHTKVEPLSPPTGVPLGELVTFEGHLSSPVEAGNRAGKAWKKASKTLEVDDTKVAKFTGETLPAHFMTSKGPITSPL 705
            E AP GE+TEL+RLEIRVG ILE++ HP  + ++VEK+D+G   E+ PRTI SGL ++ +E DLL ++ +VLCNLKP  + GV S GM+LC+S+ +HT V+ + PP GV  GELVTF+GHL++PV+AGNRA KA+KK +   + DD+  A FTGE   + F TS GP TSP+
Sbjct:   66 EVAPVGEMTELSRLEIRVGKILEVAVHPTKEKIFVEKIDVG---EDEPRTICSGLRDYLKEDDLLNKDCIVLCNLKPRDLDGVPSNGMVLCASDAEHTDVQLVVPPAGVAAGELVTFDGHLAAPVDAGNRAVKAFKKVAGLFKTDDSGAAVFTGEPA-SSFQTSSGPCTSPI 233
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BLAST of mRNA_P-canaliculata_contig10247.387.1 vs. uniprot
Match: A0A7S2V4I0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.120e-53
Identity = 103/183 (56.28%), Postives = 126/183 (68.85%), Query Frame = 1 
Query:  172 TDEPGVEAAPRGELTELARLEIRVGNILEISRHPDADSLYVEKVDIGAGEEEGPRTIVSGLVNFCQESDLLGRNVVVLCNLKPVSMKGVLSAGMLLCSSNEDHTKVEPLSPPTGVPLGELVTFEGHLSSPVEAGNRAGKAWKKASKTLEVDDTKVAKFTGETLPAHFMTSKGPITSPLPGPIS 720
            TD     AAP GEL E +RLEIRVG I+++S HPDAD LYVEK+D G   E+ PRTIVSGLV + +  DLL R+VVVL NLKP +M+G+ S GMLLC+SNEDH++V PLSPP     GEL+T EG LS P+E  NRA KA+ K +K L V+D   A F G+     F+T  GP TS + G IS
Sbjct:   70 TDAKEEAAAPAGELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCG---EDEPRTIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQVVPLSPPESSVPGELITVEGTLSQPLEPCNRASKAFDKVAKDLYVNDDLQATFDGKP----FLTPNGPCTSTMKGAIS 245
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BLAST of mRNA_P-canaliculata_contig10247.387.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 186 bits (471), Expect = 1.500e-53
Identity = 96/172 (55.81%), Postives = 122/172 (70.93%), Query Frame = 1 
Query:  211 LTELARLEIRVGNILEISRHPDADSLYVEKVDIGAGEEEGPRTIVSGLVNFCQESDLLGRNVVVLCNLKPVSMKGVLSAGMLLCSSNEDHTKVEPLSPPTGVPLGELVTFEGHLSSPVEAGNRAGKAWKKASKTLEVDDTKVAKFTGETLPAHFMTSKGPITSP--LPGPIS 720
            LTEL+RLEIRVG ++E  RHPDAD+LYVEKVD+G   E+ PRTIVSGLVNF  + +L GR V+VLCNLKP +M+G+ S GMLLC+SNEDHTKV+PL+ P    +G L+TFEGH ++P++AGNRA KA+ K +     D   +A+F        FMT  G   SP  L G +S
Sbjct:   68 LTELSRLEIRVGKVVECERHPDADTLYVEKVDVG---EDEPRTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDADGIARFNA----TPFMTEAGACYSPAKLQGSVS 232
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BLAST of mRNA_P-canaliculata_contig10247.387.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 182 bits (461), Expect = 1.860e-51
Identity = 103/187 (55.08%), Postives = 128/187 (68.45%), Query Frame = 1 
Query:  151 SETTTTTTDEPGV----EAAPRGELTELARLEIRVGNILEISRHPDADSLYVEKVDIGAGEEEGPRTIVSGLVNFCQESDLLGRNVVVLCNLKPVSMKGVLSAGMLLCSSNEDHTKVEPLSPPTGVPLGELVTFEGHLSSPVEAGNRAGKAWKKASKTLEVDDTKVAKFTGETLPAHFMTSKGPITS 699
            S TT  T   P      ++AP   LTEL+RLEIRVG I+E  +HPDAD+LYVEKVD+G   EE PRTIVSGLV +     ++GR+VVVLCNLKP +M+GV S GMLLC+SNEDHT V+PL  P   P+GELVTFEGH S+P++  NRA KA+ + +  L  ++  VA F  E +P  F TS GP  S
Sbjct:   91 SFTTVATAQAPAAVGDGDSAPDLPLTELSRLEIRVGKIIECEKHPDADTLYVEKVDVG---EEEPRTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEAGVAMF--EDVP--FSTSAGPCFS 270
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10247.387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMW6_ECTSI3.380e-10872.95Endothelial monocyte-activating polypeptide II pro... [more]
A0A835YNH3_9STRA1.310e-7872.16Endothelial monocyte-activating polypeptide II pro... [more]
W7U6C4_9STRA8.870e-6261.24Endothelial monocyte-activating polypeptide ii pro... [more]
A0A7S0XDL6_9STRA1.290e-5657.89Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S3M138_9STRA2.390e-5662.15Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A5J4Z2W6_PORPP8.070e-5458.14Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]
A0A7S2R5F0_9STRA9.350e-5454.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2V4I0_9STRA1.120e-5356.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0ZE83_9RHOD1.500e-5355.81Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A2V3IUX7_9FLOR1.860e-5155.08Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10247contigP-canaliculata_contig10247:2200..4760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.5
Seed ortholog evalue6.9e-83
Seed eggNOG ortholog2880.D7FMW6
Preferred nameYARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
EggNOG free text desc.tRNA binding
EggNOG OGsCOG0143@1,KOG2241@2759
EC6.1.1.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-09_002760.1
Exons5
Model size1108
Cds size597
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.4310744-UTR-P-canaliculata_contig10247:2199..23251622815598.4310744-UTR-P-canaliculata_contig10247:2199..2325Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10247 2200..2325 +
1693494158.3222222-UTR-P-canaliculata_contig10247:2199..23251693494158.3222222-UTR-P-canaliculata_contig10247:2199..2325Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10247 2200..2325 +
1622815598.5108378-UTR-P-canaliculata_contig10247:4375..47601622815598.5108378-UTR-P-canaliculata_contig10247:4375..4760Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10247 4376..4760 +
1693494158.393058-UTR-P-canaliculata_contig10247:4375..47601693494158.393058-UTR-P-canaliculata_contig10247:4375..4760Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10247 4376..4760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.4443526-CDS-P-canaliculata_contig10247:2325..23371622815598.4443526-CDS-P-canaliculata_contig10247:2325..2337Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10247 2326..2337 +
1693494158.332342-CDS-P-canaliculata_contig10247:2325..23371693494158.332342-CDS-P-canaliculata_contig10247:2325..2337Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10247 2326..2337 +
1622815598.4620001-CDS-P-canaliculata_contig10247:2733..28531622815598.4620001-CDS-P-canaliculata_contig10247:2733..2853Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10247 2734..2853 +
1693494158.346169-CDS-P-canaliculata_contig10247:2733..28531693494158.346169-CDS-P-canaliculata_contig10247:2733..2853Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10247 2734..2853 +
1622815598.4739707-CDS-P-canaliculata_contig10247:3199..33731622815598.4739707-CDS-P-canaliculata_contig10247:3199..3373Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10247 3200..3373 +
1693494158.3586543-CDS-P-canaliculata_contig10247:3199..33731693494158.3586543-CDS-P-canaliculata_contig10247:3199..3373Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10247 3200..3373 +
1622815598.4854612-CDS-P-canaliculata_contig10247:3735..39361622815598.4854612-CDS-P-canaliculata_contig10247:3735..3936Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10247 3736..3936 +
1693494158.3675468-CDS-P-canaliculata_contig10247:3735..39361693494158.3675468-CDS-P-canaliculata_contig10247:3735..3936Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10247 3736..3936 +
1622815598.5008328-CDS-P-canaliculata_contig10247:4285..43751622815598.5008328-CDS-P-canaliculata_contig10247:4285..4375Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10247 4286..4375 +
1693494158.3774784-CDS-P-canaliculata_contig10247:4285..43751693494158.3774784-CDS-P-canaliculata_contig10247:4285..4375Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10247 4286..4375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10247.387.1prot_P-canaliculata_contig10247.387.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10247 2326..4375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10247.387.1

>prot_P-canaliculata_contig10247.387.1 ID=prot_P-canaliculata_contig10247.387.1|Name=mRNA_P-canaliculata_contig10247.387.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=199bp
MCRTAKMMSETTTTTTDEPGVEAAPRGELTELARLEIRVGNILEISRHPD
ADSLYVEKVDIGAGEEEGPRTIVSGLVNFCQESDLLGRNVVVLCNLKPVS
MKGVLSAGMLLCSSNEDHTKVEPLSPPTGVPLGELVTFEGHLSSPVEAGN
RAGKAWKKASKTLEVDDTKVAKFTGETLPAHFMTSKGPITSPLPGPIS*
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mRNA from alignment at P-canaliculata_contig10247:2200..4760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10247.387.1 ID=mRNA_P-canaliculata_contig10247.387.1|Name=mRNA_P-canaliculata_contig10247.387.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2561bp|location=Sequence derived from alignment at P-canaliculata_contig10247:2200..4760+ (Pelvetia canaliculata dioecious)
CCTCAAGGCCATGCTTTTCGTGGAAGGACCGGTTGGGCTGTAGCCCTGCG
GTATGTTTCCCGAGCTCACCGATCGTCTACATCACGGGTGTTGGCGCTCA
GGCGACCTGCACCAGGGGCGGGTGGCATGTGTCGTACGGTGAGGTGTTCG
CTGAGCTAAGGTCGGCGGGAGAGAGTCTTAAGTATCATACACTGCAGCAC
AGCAACAACCGTACGTGTAGGCTTTGAAAGCACACGTTCGGATGGATGCA
CGTGCTCGATTTTCCCCAACGGTGTACTTGTTTTCGTATGAAGGCAGCGA
GATCAAACGCCGTGGGCTTGCGGAGCTCTTGAGCGTATCTGTTTTCCACG
AGAGTTTAGATCATGCAGCAGCTGTGATTCGCCGGACTGCGCAACATTAT
TGTGGTCCTAGCTTCAGAACGCGTGTCATATACAGCAGCGGTAATGCACC
GGACTGCCCAATATTATTTTGGCCCTAACTTATGTGCGAGCGGCATATAC
ACTTCTTATTTCTCACAGCGATCTACCGTAACAGGCGAAGATGATGTCGG
AAACGACCACGACCACGACGGATGAGCCCGGGGTTGAGGCAGCTCCGAGA
GGAGAATTGACAGAGCTCGCTCGCCTCGAAATTCGCGTGGGAAATATCTT
AGAGGTAATAAACAGCCCCTCGTCGAGTGTCAACCAGTGGCCTTTGTAGA
TGCGTTCAGGGGCTGATACTCCCTCAAGAACGGCACCTCCATAAGTTATG
CTATGCCACGATCCTGCTATCAGCGAGTGGAGCGAAGTGCTTTTTTCAGC
AAAAAACATCGCCGCAAGCGCCGCCCCGTGAGGGGAAAGTACGTTTTCTC
TCGTGTCTCTTTTCGCTGCTCGCTTGCTGACGTCGAGCACCGTGAAGCAC
CTGTGTCGACGCGTGCGGTGGAGCTTCCTGCCGTTAACACTGAGGAGATG
CCTTTTCCTTCTCGACTCTGCGCTCACGCACCCTCTTAATTACTACGCAG
ATTTCTCGGCATCCTGACGCCGACAGTCTGTACGTGGAAAAAGTAGACAT
CGGGGCTGGTGAGGAAGAAGGGCCGCGAACCATCGTTTCGGGCCTGGTGA
ACTTTTGCCAAGAATCTGACCTGTTGGGGAGGAACGTGGTTGTTCTCTGC
AACCTTAAGCCCGTCAGCATGAAGGTGTGCTCCCACCAATCAACTACATA
AGTGCGCCTCGAAGTCGAACGCGAGTCCTCACTCAAGTCCTTCGCTGTTT
TACATTCTGTAGCTTGACAATTGACACTGAAGCCGGTCGGGGCTTGACTC
CCTTGTCAACCTCGAGGGGTCATGTGCTTCAAGGAATTTTTATCTGTCTC
CAGAACGGTCAAATACGTTGGGCAAGACCGTCTCCCTCTCCTAGAGGCGT
GACCAGATCATGTTTCAGGATCGAAAGAAACTGTTGAAGTAACCAAGAAA
CGTACTGCCATCTCCAGTGTACATGAGGTGGTGCACACCCCCGCATACCT
TTTTGGTCCCGCTTGCGTATCCTCGACGCTCGTTAGGGAGTGTTGTCGGC
GGGTATGTTGCTGTGCTCCAGTAACGAGGACCACACGAAAGTGGAGCCTC
TCTCTCCCCCAACGGGCGTGCCTCTTGGAGAACTGGTGACCTTCGAGGGG
CATTTATCGTCGCCGGTTGAGGCCGGCAACCGCGCGGGAAAGGCGTGGAA
AAAGGCGTCGAAGACGCTGGAGGTTGACGACACCAAGGTGTGGGCGCTCA
CTTGGCCGGACATGAGAGTTCAATTGAACTACGCAATACATCTTGAGATG
TCGCGGAGCCTTGAAACTGGGCCATCGGGTTGAGAGGGATAGCACACGGG
GCGGATCGCTCCCTTGCGATCGCGATTGGTGTCTCTCTGTACAGCAGAAA
TACGATTAGATCGCCCTCTGAAAATTGGGGTTATTTCTCCTCTTTTCAGC
GAAAACTGTGTTTTCATTCAATCGAAGATACAATAGGATAATTCTAACAA
AATGTTTGATGGTCACTTGGTTATGGGCCGTTCATGAGTGTTTTAACTCG
CACATCGATCGCGTGTCATCTACCTTCCTTTGCCAGGTGGCGAAGTTCAC
GGGGGAAACGCTTCCCGCTCATTTTATGACGTCCAAGGGTCCCATCACCT
CCCCGCTGCCGGGACCCATATCATGATCCTGTGGCCGGGCGGGTTCGGAT
ATCATTTCATAAAGTTAGAGACAATCATCGTTAAAAAAACTGATTTTCAC
GGTATCTGGTGGCGTTCTGTTAAAAAAATCCGATGGTTGTGCTCATCGAA
CATCAGCTTCAGTCACAAACGTACACCGATGCTCTAGAAATTATTAGTGC
TATAGCCTTACATGCTTTACATGTCGAACCCCTGCTGCGCATAGATTCCT
TGCATACAACACTCTGCAGGCGCCCTTCACCTCATGCAGAAACAATAGAG
CTAAATGTGCAACACATAGTTACGAGGCATTTGTGTTAAAGCTATCATTC
GAGGAAACCCAATGATGTCATGGCACAGATAGATGCTGTGTTCCGCGGTC
GGTTGGTGGAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10247:2200..4760+

>mRNA_P-canaliculata_contig10247.387.1 ID=mRNA_P-canaliculata_contig10247.387.1|Name=mRNA_P-canaliculata_contig10247.387.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at P-canaliculata_contig10247:2200..4760+ (Pelvetia canaliculata dioecious)
ATGTGTCGTACGATGTGTCGTACGGCGAAGATGATGTCGGAAACGACCAC
GACCACGACGGATGAGCCCGGGGTTGAGGCAGCTCCGAGAGGAGAATTGA
CAGAGCTCGCTCGCCTCGAAATTCGCGTGGGAAATATCTTAGAGGCGAAG
ATGATGTCGGAAACGACCACGACCACGACGGATGAGCCCGGGGTTGAGGC
AGCTCCGAGAGGAGAATTGACAGAGCTCGCTCGCCTCGAAATTCGCGTGG
GAAATATCTTAGAGATTTCTCGGCATCCTGACGCCGACAGTCTGTACGTG
GAAAAAGTAGACATCGGGGCTGGTGAGGAAGAAGGGCCGCGAACCATCGT
TTCGGGCCTGGTGAACTTTTGCCAAGAATCTGACCTGTTGGGGAGGAACG
TGGTTGTTCTCTGCAACCTTAAGCCCGTCAGCATGAAGATTTCTCGGCAT
CCTGACGCCGACAGTCTGTACGTGGAAAAAGTAGACATCGGGGCTGGTGA
GGAAGAAGGGCCGCGAACCATCGTTTCGGGCCTGGTGAACTTTTGCCAAG
AATCTGACCTGTTGGGGAGGAACGTGGTTGTTCTCTGCAACCTTAAGCCC
GTCAGCATGAAGGGAGTGTTGTCGGCGGGTATGTTGCTGTGCTCCAGTAA
CGAGGACCACACGAAAGTGGAGCCTCTCTCTCCCCCAACGGGCGTGCCTC
TTGGAGAACTGGTGACCTTCGAGGGGCATTTATCGTCGCCGGTTGAGGCC
GGCAACCGCGCGGGAAAGGCGTGGAAAAAGGCGTCGAAGACGCTGGAGGT
TGACGACACCAAGGGAGTGTTGTCGGCGGGTATGTTGCTGTGCTCCAGTA
ACGAGGACCACACGAAAGTGGAGCCTCTCTCTCCCCCAACGGGCGTGCCT
CTTGGAGAACTGGTGACCTTCGAGGGGCATTTATCGTCGCCGGTTGAGGC
CGGCAACCGCGCGGGAAAGGCGTGGAAAAAGGCGTCGAAGACGCTGGAGG
TTGACGACACCAAGGTGGCGAAGTTCACGGGGGAAACGCTTCCCGCTCAT
TTTATGACGTCCAAGGGTCCCATCACCTCCCCGCTGCCGGGACCCATATC
ATGAGTGGCGAAGTTCACGGGGGAAACGCTTCCCGCTCATTTTATGACGT
CCAAGGGTCCCATCACCTCCCCGCTGCCGGGACCCATATCATGA
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