mRNA_P-canaliculata_contig102171.345.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig102171.345.1 vs. uniprot
Match: A0A7W0G8P5_9ACTN (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0G8P5_9ACTN) HSP 1 Score: 136 bits (343), Expect = 1.960e-36 Identity = 79/163 (48.47%), Postives = 107/163 (65.64%), Query Frame = 1
Query: 1 DYDGDGLLGTDEDGDGDQVYGTIMGG------VNGISDNGRVMIVTSGRFLEQVNLAGTGVTVLEAAPGVNAVVEAFQAGGDAGENNTRQQQPGIIIHSDGSFPLEIRNIVSRNWTDGIQIRGSARVTLDNVRLDSNVNYGINVLGDSRVVITDSQVNSSGFR 471
DYDGDG +GT ED DGD+V+GTI G ++NG + IVTSG F EQV L+G LEAA GV A ++A + G D G + RQ QPGII+++ + + +RNI SRNWT G QI G +RV L+ VR + N NYGI + G+++V I+DS+V ++G R
Sbjct: 41 DYDGDGRIGTAEDNDGDRVFGTINGANTTGSAATRANNNGTITIVTSGLFAEQVTLSGN--VTLEAAAGVEANLDAVRQG-DPG-STARQGQPGIIVNAPANRQVVVRNIQSRNWTSGFQINGDSRVALEGVRAEHNTNYGIEITGNAKVAISDSEVYATGRR 199
BLAST of mRNA_P-canaliculata_contig102171.345.1 vs. uniprot
Match: A0A838SPF0_9ACTN (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Acidothermales bacterium TaxID=2740546 RepID=A0A838SPF0_9ACTN) HSP 1 Score: 135 bits (341), Expect = 3.450e-36 Identity = 80/168 (47.62%), Postives = 105/168 (62.50%), Query Frame = 1
Query: 1 DYDGDGLLGTDEDGDGDQVYGTIMGGVNGISDNGRVMIVTSGRFLEQVNLAGTGVT--VLEAAPGVNAVVEAFQAGGDAGENNTRQQQPGIIIHSDGSFPLEIRNIVSRNWTDGIQIRGSARVTLDNVRLDSNVNYGINVLGDSRVVITDSQVNSSGFRRSGSLGLTP 498
DYDGDG +G ED DGD YG+I V+ +++NGRV IV +G F E V LA TG LEAAPGV+A ++A G N RQ PGIII + +RN+++RNWTDG+ I G + V LD VR ++N+NYGI+ SRV I +S VN++GFR + TP
Sbjct: 65 DYDGDGNIGATEDNDGDNNYGSIGAAVDAVANNGRVTIVANGIFPEVVRLAPTGGANISLEAAPGVDANIDAVVQGQPG--NAERQMAPGIIIDGCDDCRVTVRNVMTRNWTDGVLILGRSHVALDEVRAENNLNYGIHASSRSRVAIRNSDVNATGFRADANGPGTP 230
BLAST of mRNA_P-canaliculata_contig102171.345.1 vs. uniprot
Match: A0A838PU41_9ACTN (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Euzebyaceae bacterium TaxID=2740542 RepID=A0A838PU41_9ACTN) HSP 1 Score: 134 bits (338), Expect = 1.170e-35 Identity = 75/161 (46.58%), Postives = 107/161 (66.46%), Query Frame = 1
Query: 1 DYDGDGLLGTDEDGDGDQVYGTIMGGVNGISDNGRVMIVTSGRFLEQVNL--AGTGVTVLEAAPGVNAVVEAFQAGGDAGENNTRQQQPGIIIHSDGSFPLEIRNIVSRNWTDGIQIRGSARVTLDNVRLDSNVNYGINVLGDSRVVITDSQVNSSGFRRS 477
DYDGDG +G ED DGD +GTI + ++ NGRV IV +G + E V L G LEAAPGV+A ++A G D G + RQQ+PGII+ + +RN+++RNWTDG+Q+RG + + LD V ++N+NYGI V ++V I++SQVN+SGFR++
Sbjct: 67 DYDGDGSIGMAEDNDGDNNFGTINAALTAVAQNGRVTIVANGTYGEVVTLNPVERGNVTLEAAPGVSANIDAVVQG-DPGSTD-RQQRPGIIVDGCRRCRVTVRNVITRNWTDGVQVRGFSHLHLDQVISENNLNYGIRVKNRAKVSISNSQVNASGFRKN 225
BLAST of mRNA_P-canaliculata_contig102171.345.1 vs. uniprot
Match: A0A7W1AXH5_9HYPH (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W1AXH5_9HYPH) HSP 1 Score: 134 bits (336), Expect = 1.190e-35 Identity = 78/176 (44.32%), Postives = 113/176 (64.20%), Query Frame = 1
Query: 1 DYDGDGLLGTDEDGDGDQVYGTIMG-----GVNGISDNGRVMIVTSGRFLEQVNL-AGTGVTVLEAAPGVNAVVEAFQAGGDAGENNTRQQQPGIIIHSDGSFPLEIRNIVSRNWTDGIQIRGSARVTLDNVRLDSNVNYGINVLGDSRVVITDSQVNSSGFRRSGSLGLTPGGDI 510
D+DGDG +G ED DGD+V+GTIMG G G++ NG+V IVTSG F+ V + A G L+AAPGV AV++A G ++ RQ +PGI + + G+ + IRN+ RNWT GI++ +RV +++VR+++N+NYGI V G ++V + SQV ++GFR S P GD
Sbjct: 35 DFDGDGKIGFAEDNDGDRVFGTIMGALGDSGGTGVNQNGQVTIVTSGVFVGPVFITAANGNVTLQAAPGVEAVIDAVLQGDP--QSTARQGRPGITVQAPGNRRVVIRNLTVRNWTTGIRVGDGSRVAIESVRVENNINYGIEVGGRAKVKVDQSQVIATGFRNS------PAGDF 202
BLAST of mRNA_P-canaliculata_contig102171.345.1 vs. uniprot
Match: A0A7V9HYA6_9BACT (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7V9HYA6_9BACT) HSP 1 Score: 132 bits (332), Expect = 1.050e-34 Identity = 79/163 (48.47%), Postives = 106/163 (65.03%), Query Frame = 1
Query: 1 DYDGDGLLGTDEDGDGDQVYGTIM-----GGVNGISDNGRVMIVTSGRFLEQVNL-AGTGVTVLEAAPGVNAVVEAFQAGGDAGENNTRQQQPGIIIHSDGSFPLEIRNIVSRNWTDGIQIRGSARVTLDNVRLDSNVNYGINVLGDSRVVITDSQVNSSGFR 471
DYDGDG +GT ED DGD+V+GTI GG G + NGRV+IVTSG F E V++ A G LEAA GV A V+A G D G N RQQ PGII+++ + IRNIVSRNWT+GI++ GS++V +D+ R+++N NY ++QV+++GFR
Sbjct: 64 DYDGDGRIGTAEDTDGDRVFGTITAALGAGGGTGANQNGRVVIVTSGTFAEVVSITAANGNVTLEAAQGVEANVDAVLQG-DPG-NGARQQAPGIIVNAPADRFVTIRNIVSRNWTEGIRVSGSSKVLIDDCRIENNTNYXXXXXXXXXXXXNNTQVSATGFR 224
BLAST of mRNA_P-canaliculata_contig102171.345.1 vs. uniprot
Match: A0A7V9J413_9BACT (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7V9J413_9BACT) HSP 1 Score: 119 bits (298), Expect = 7.500e-30 Identity = 76/168 (45.24%), Postives = 102/168 (60.71%), Query Frame = 1
Query: 1 DYDGDGLLGTDEDGDGDQVYGTIMG--GVNGISDNGRVMIVTSGRFLEQVNLAGTGVTVLEAAPGVNAVVEAFQAGGDAGENNTRQQQPGIIIHSDGSFPLEIRNIVSRNWTDGIQIRGSARVTLDNVRLDSNVNYGINVLGDSRVVITDSQVNSSGFRRSGSLGLTP 498
DYDGDGL+G I G G GI++NG + IVTSG F EQV L TG L+AAPGV A ++A G D+G + RQ QPGII+++ + + +RN+ SRNWT GIQ+ G +R+ +D RL+ NVNYGI V ++V I S V ++GFR + G P
Sbjct: 61 DYDGDGLIGXXXXXXXXXXXXXIAGANGTLGINNNGTITIVTSGTFPEQVTL--TGNVTLQAAPGVEANIDAVLQG-DSG-SIARQGQPGIIVNAPANRYVVLRNLTSRNWTSGIQVLGESRLAIDGCRLEHNVNYGIEVRDTAKVKIDQSAVAATGFRLNPDTGDFP 224
BLAST of mRNA_P-canaliculata_contig102171.345.1 vs. uniprot
Match: A0A7W0ST77_9ACTN (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0ST77_9ACTN) HSP 1 Score: 120 bits (300), Expect = 1.210e-29 Identity = 75/178 (42.13%), Postives = 107/178 (60.11%), Query Frame = 1
Query: 1 DYDGDGLLGTDEDGD-GDQVYGTIMGGVN---------GISDNGRVMIVTSGRFLEQVNL--AGTGVTVLEAAPGVNAVVEAFQAGGDAGENNTRQQQPGIIIHSDGSFPLEIRNIVSRNWTDGIQIRGSARVTLDNVRLDSNVNYGINVLGDSRVVITDSQVNSSGFRRSGSLGLTP 498
D+DGDG LGT ED D D+V+GTI G + G + NG V IV+SG F E V++ AG VTV +AAPGV A ++A GG ++++ + + IRNI SRNWT GIQ+ G++RV ++NVR+++N+NYG+ V +RV I+ S+V +GFR + G P
Sbjct: 54 DFDGDGRLGTAEDTDEADRVFGTINGALGAGTVEGVSTGANQNGSVTIVSSGVFPEVVSITAAGGNVTV-QAAPGVEANIDAVLQGGAGAXXXXXXXXXXXVVNAPSNRYVVIRNITSRNWTSGIQVLGASRVAIENVRMENNINYGVEVADSARVAISKSEVLGTGFRNNPMTGNFP 230
BLAST of mRNA_P-canaliculata_contig102171.345.1 vs. uniprot
Match: A0A7W1HD60_9BACT (Right-handed parallel beta-helix repeat-containing protein n=3 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1HD60_9BACT) HSP 1 Score: 118 bits (295), Expect = 2.580e-29 Identity = 74/164 (45.12%), Postives = 100/164 (60.98%), Query Frame = 1
Query: 1 DYDGDGLLGTDEDGDG--DQVYGTIMGGVN--GISDNGRVMIVTSGRFLEQVNLAGTGVTVLEAAPGVNAVVEAFQAGGDAGENNTRQQQPGIIIHSDGSFPLE-IRNIVSRNWTDGIQIRGSARVTLDNVRLDSNVNYGINVLGDSRVVITDSQVNSSGFRRS 477
DYDGDG +GT ED D D+V+GTI + GI+ NG + IV SG F E V+L G L+AAPGV A ++A G G RQ QPGII++S + IRNI S+NWT GI++ G +RV ++N RL++NVNYG I+D++V +G+R S
Sbjct: 57 DYDGDGRIGTAEDTDAPFDRVFGTINAALGPVGINQNGTITIVASGIFPETVSLLGN--VTLQAAPGVEANIDAVLQGDPGG--TARQGQPGIIVNSGSLGHTQVIRNITSKNWTSGIRVMGQSRVAIENCRLENNVNYGXXXXXXXXXXISDTKVRGTGYRIS 216
BLAST of mRNA_P-canaliculata_contig102171.345.1 vs. uniprot
Match: A0A6J4JSK1_9BACT (Beta_helix domain-containing protein n=1 Tax=uncultured Armatimonadetes bacterium TaxID=157466 RepID=A0A6J4JSK1_9BACT) HSP 1 Score: 112 bits (281), Expect = 3.130e-27 Identity = 75/189 (39.68%), Postives = 111/189 (58.73%), Query Frame = 1
Query: 1 DYDGDGLLGTDEDGDG--DQVYGTI---MGGVNG-ISDNGRVMIVTSGRFLEQVNLAG----------TGVTVLEAAPGVNAVVEAFQAGGDAGENNTRQQQPGIIIHS-DGSFPLEIRNIVSRNWTDGIQIRGSARVTLDNVRLDSNVNYGINVLGDSRVVITDSQVNSSGFR--RSGSLGLTPGGDI 510
D+DGDGL+GT ED D D+V+GT+ +G NG + NGRV IVTSGRF E ++L+G GV V+EAAPGV A ++A AG DA R+ PGI+I + + +RN+V RNW G+ +RG ARVT++ + DSN+ ++ +R+ +T+ +++ G R +G PG +
Sbjct: 55 DFDGDGLIGTAEDTDNATDRVFGTLTAALGSANGGANGNGRVTIVTSGRFPEAIDLSGGAGASTGQTLNGVLVIEAAPGVVANIDAVLAG-DAAGTTAREALPGILIETAQTDRAVILRNLVVRNWAYGLLVRGGARVTVEGCKFDSNLAANVSAEDRARLTMTECSISAGGMRFTAAGKAAPDPGNGV 242
BLAST of mRNA_P-canaliculata_contig102171.345.1 vs. uniprot
Match: A0A7V9P3R3_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9P3R3_9ACTN) HSP 1 Score: 93.6 bits (231), Expect = 1.560e-21 Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 1
Query: 85 GISDNGRVMIVTSGRFLEQVNLAGTGVTV-LEAAPGVNAVVEAFQAGGDAGENNTRQQQPGIIIHSDGSFPLEIRNIVSRNWTDGIQIRGSARVTLDNVRLDSNVNYGI 408
G + NG+++IVTSG F E V + G V V LEAAPGVNA V+A G D G N RQ PGII++ G + +RN+ RNWT G+ +RG + V++++ R+ +N N+GI
Sbjct: 10 GANQNGKIIIVTSGTFAETVTITGANVNVELEAAPGVNADVDAVLQG-DPG-NGARQNAPGIIVNVPGDRHVILRNLQVRNWTIGVDVRGDSHVSIEDSRVANNTNWGI 116 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102171.345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102171.345.1 >prot_P-canaliculata_contig102171.345.1 ID=prot_P-canaliculata_contig102171.345.1|Name=mRNA_P-canaliculata_contig102171.345.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=170bp DYDGDGLLGTDEDGDGDQVYGTIMGGVNGISDNGRVMIVTSGRFLEQVNLback to top mRNA from alignment at P-canaliculata_contig102171:447..956+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102171.345.1 ID=mRNA_P-canaliculata_contig102171.345.1|Name=mRNA_P-canaliculata_contig102171.345.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at P-canaliculata_contig102171:447..956+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102171:447..956+ >mRNA_P-canaliculata_contig102171.345.1 ID=mRNA_P-canaliculata_contig102171.345.1|Name=mRNA_P-canaliculata_contig102171.345.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at P-canaliculata_contig102171:447..956+ (Pelvetia canaliculata dioecious)back to top |