mRNA_P-canaliculata_contig102145.340.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102145.340.1
Unique NamemRNA_P-canaliculata_contig102145.340.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102145.340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102145contigP-canaliculata_contig102145:525..998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.9254308-CDS-P-canaliculata_contig102145:524..9981622815594.9254308-CDS-P-canaliculata_contig102145:524..998Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102145 525..998 +
1693494156.248103-CDS-P-canaliculata_contig102145:524..9981693494156.248103-CDS-P-canaliculata_contig102145:524..998Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102145 525..998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102145.340.1prot_P-canaliculata_contig102145.340.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102145 525..998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102145.340.1

>prot_P-canaliculata_contig102145.340.1 ID=prot_P-canaliculata_contig102145.340.1|Name=mRNA_P-canaliculata_contig102145.340.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=158bp
NLDNIDAVVRVRNRNGSGTGSIYGETQTTYKVVTNYHVAGRSGSTNTIDI
WNNGQLVRSVQAQVKQHFFTRGTNKDISLLEIPKAALPGEQPVIPMAEYA
SESVKVGDRIWQVGCDAGNWTNAERGIVLAIEDGVVFYLPNSIPGNSGGP
IFSSDCSK
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mRNA from alignment at P-canaliculata_contig102145:525..998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102145.340.1 ID=mRNA_P-canaliculata_contig102145.340.1|Name=mRNA_P-canaliculata_contig102145.340.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at P-canaliculata_contig102145:525..998+ (Pelvetia canaliculata dioecious)
AATCTTGACAACATCGATGCAGTGGTCCGAGTGCGAAATCGCAACGGTAG
CGGAACAGGGTCGATTTACGGCGAAACTCAAACCACCTATAAGGTTGTCA
CCAATTATCACGTCGCAGGCAGGTCCGGCAGTACCAACACCATTGATATC
TGGAACAATGGGCAACTCGTGCGGAGTGTTCAAGCCCAAGTAAAGCAGCA
CTTTTTTACTCGAGGTACAAATAAAGACATCTCGCTGCTAGAAATCCCCA
AGGCTGCATTGCCCGGCGAGCAACCCGTGATTCCGATGGCCGAATACGCT
TCTGAATCTGTAAAAGTCGGTGATCGCATCTGGCAGGTAGGATGCGATGC
CGGCAACTGGACCAACGCAGAGCGCGGTATCGTTCTTGCGATCGAAGATG
GTGTTGTTTTCTATTTACCAAATTCAATTCCGGGCAACTCTGGTGGTCCA
ATCTTTTCCAGCGACTGTTCAAAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig102145:525..998+

>mRNA_P-canaliculata_contig102145.340.1 ID=mRNA_P-canaliculata_contig102145.340.1|Name=mRNA_P-canaliculata_contig102145.340.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at P-canaliculata_contig102145:525..998+ (Pelvetia canaliculata dioecious)
AATCTTGACAACATCGATGCAGTGGTCCGAGTGCGAAATCGCAACGGTAG
CGGAACAGGGTCGATTTACGGCGAAACTCAAACCACCTATAAGGTTGTCA
CCAATTATCACGTCGCAGGCAGGTCCGGCAGTACCAACACCATTGATATC
TGGAACAATGGGCAACTCGTGCGGAGTGTTCAAGCCCAAGTAAAGCAGCA
CTTTTTTACTCGAGGTACAAATAAAGACATCTCGCTGCTAGAAATCCCCA
AGGCTGCATTGCCCGGCGAGCAACCCGTGATTCCGATGGCCGAATACGCT
TCTGAATCTGTAAAAGTCGGTGATCGCATCTGGCAGGTAGGATGCGATGC
CGGCAACTGGACCAACGCAGAGCGCGGTATCGTTCTTGCGATCGAAGATG
GTGTTGTTTTCTATTTACCAAATTCAATTCCGGGCAACTCTGGTGGTCCA
ATCTTTTCCAGCGACTGTTCAAAAAATCTTGACAACATCGATGCAGTGGT
CCGAGTGCGAAATCGCAACGGTAGCGGAACAGGGTCGATTTACGGCGAAA
CTCAAACCACCTATAAGGTTGTCACCAATTATCACGTCGCAGGCAGGTCC
GGCAGTACCAACACCATTGATATCTGGAACAATGGGCAACTCGTGCGGAG
TGTTCAAGCCCAAGTAAAGCAGCACTTTTTTACTCGAGGTACAAATAAAG
ACATCTCGCTGCTAGAAATCCCCAAGGCTGCATTGCCCGGCGAGCAACCC
GTGATTCCGATGGCCGAATACGCTTCTGAATCTGTAAAAGTCGGTGATCG
CATCTGGCAGGTAGGATGCGATGCCGGCAACTGGACCAACGCAGAGCGCG
GTATCGTTCTTGCGATCGAAGATGGTGTTGTTTTCTATTTACCAAATTCA
ATTCCGGGCAACTCTGGTGGTCCAATCTTTTCCAGCGACTGTTCAAAA
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