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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Bacteria |
| Seed ortholog score | 61.2 |
| Seed ortholog evalue | 1e-06 |
| Seed eggNOG ortholog | 688270.Celal_3882 |
| EggNOG free text desc. | Leucine Rich repeats (2 copies) |
| EggNOG OGs | 1FAIA@104264,1IGQD@117743,4PHZB@976,COG4886@1,COG4886@2 |
| COG Functional cat. | S |
| Best tax level | Cellulophaga |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 999 |
| Cds size | 999 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815590.0473409-CDS-P-canaliculata_contig101692:7..1006 | 1622815590.0473409-CDS-P-canaliculata_contig101692:7..1006 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101692 8..1006 - |
| 1693494153.8590472-CDS-P-canaliculata_contig101692:7..1006 | 1693494153.8590472-CDS-P-canaliculata_contig101692:7..1006 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101692 8..1006 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101692.261.1 >prot_P-canaliculata_contig101692.261.1 ID=prot_P-canaliculata_contig101692.261.1|Name=mRNA_P-canaliculata_contig101692.261.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=333bp
IGYLKNLKELYLQQNELEKLPKSFSYLTKLQKINLSLNKFQVFPKTIFNF
KLLEYINVSGNKIKVLPKQIGLLKRLTYLNISENRISTIPTRLYVLRKLK
KANFHFNNNLLSDVIIKEIDEKLGKIKSSPKKKKVKEAPSKTLRKASENL
LEDETKSIKGISGLFIFRDLGLIILIPFLLYLFFKYNENMDLKIEEDKIK
KDKEAYALAVQNMKASKERILEKTKEIYVYTNDTASLKLTIAANAYFSDL
EFNKRYTYMFKRKTKYINKFLNNKSYGYKGVIDKCRKKFSQLWLHDSVIP
NGYAKKFRIVRYYRMNAKERAYNIERDKKRAYY back to topmRNA from alignment at P-canaliculata_contig101692:8..1006- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig101692.261.1 ID=mRNA_P-canaliculata_contig101692.261.1|Name=mRNA_P-canaliculata_contig101692.261.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at P-canaliculata_contig101692:8..1006- (Pelvetia canaliculata dioecious)
ATTGGGTATCTTAAAAATTTAAAAGAACTTTATTTACAACAAAACGAACT
AGAAAAACTACCCAAAAGTTTCTCATATCTAACTAAATTACAAAAGATAA
ACCTTAGTTTAAATAAGTTTCAAGTCTTTCCGAAAACAATTTTCAATTTT
AAACTTCTTGAATATATTAATGTTAGCGGAAATAAAATAAAAGTACTTCC
TAAGCAAATTGGTCTTTTAAAGAGGTTAACATATTTAAATATTTCAGAGA
ATAGAATAAGTACAATTCCGACAAGATTATATGTTTTACGAAAATTAAAA
AAAGCCAATTTTCATTTTAATAATAATTTACTTTCTGATGTTATTATAAA
GGAAATAGATGAAAAATTAGGGAAAATAAAATCGAGTCCTAAAAAAAAGA
AGGTAAAAGAAGCGCCATCAAAAACACTAAGAAAAGCATCTGAAAACTTA
TTAGAGGATGAAACTAAAAGTATTAAAGGTATTTCTGGTTTATTTATTTT
TAGAGATTTAGGTTTAATTATACTCATTCCTTTTTTATTGTACTTGTTCT
TTAAGTATAACGAGAATATGGATTTGAAGATAGAAGAAGATAAAATCAAA
AAAGATAAAGAAGCGTATGCTTTGGCTGTTCAAAATATGAAGGCATCCAA
AGAAAGAATATTAGAAAAAACAAAAGAAATTTACGTATATACAAATGATA
CTGCTAGTTTAAAATTAACGATTGCTGCAAATGCATATTTTTCTGATTTA
GAATTTAATAAGAGGTATACGTATATGTTTAAAAGAAAGACAAAGTATAT
CAATAAATTTTTAAACAATAAAAGTTACGGTTACAAAGGAGTTATAGATA
AATGTAGAAAAAAATTCTCTCAATTGTGGTTACACGATTCTGTTATTCCT
AATGGATATGCTAAAAAATTTAGAATTGTAAGATATTATAGAATGAATGC
TAAAGAAAGAGCGTATAATATTGAGCGAGATAAAAAAAGAGCTTACTAT back to topCoding sequence (CDS) from alignment at P-canaliculata_contig101692:8..1006- >mRNA_P-canaliculata_contig101692.261.1 ID=mRNA_P-canaliculata_contig101692.261.1|Name=mRNA_P-canaliculata_contig101692.261.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at P-canaliculata_contig101692:8..1006- (Pelvetia canaliculata dioecious)
ATTGGGTATCTTAAAAATTTAAAAGAACTTTATTTACAACAAAACGAACT
AGAAAAACTACCCAAAAGTTTCTCATATCTAACTAAATTACAAAAGATAA
ACCTTAGTTTAAATAAGTTTCAAGTCTTTCCGAAAACAATTTTCAATTTT
AAACTTCTTGAATATATTAATGTTAGCGGAAATAAAATAAAAGTACTTCC
TAAGCAAATTGGTCTTTTAAAGAGGTTAACATATTTAAATATTTCAGAGA
ATAGAATAAGTACAATTCCGACAAGATTATATGTTTTACGAAAATTAAAA
AAAGCCAATTTTCATTTTAATAATAATTTACTTTCTGATGTTATTATAAA
GGAAATAGATGAAAAATTAGGGAAAATAAAATCGAGTCCTAAAAAAAAGA
AGGTAAAAGAAGCGCCATCAAAAACACTAAGAAAAGCATCTGAAAACTTA
TTAGAGGATGAAACTAAAAGTATTAAAGGTATTTCTGGTTTATTTATTTT
TAGAGATTTAGGTTTAATTATACTCATTCCTTTTTTATTGTACTTGTTCT
TTAAGTATAACGAGAATATGGATTTGAAGATAGAAGAAGATAAAATCAAA
AAAGATAAAGAAGCGTATGCTTTGGCTGTTCAAAATATGAAGGCATCCAA
AGAAAGAATATTAGAAAAAACAAAAGAAATTTACGTATATACAAATGATA
CTGCTAGTTTAAAATTAACGATTGCTGCAAATGCATATTTTTCTGATTTA
GAATTTAATAAGAGGTATACGTATATGTTTAAAAGAAAGACAAAGTATAT
CAATAAATTTTTAAACAATAAAAGTTACGGTTACAAAGGAGTTATAGATA
AATGTAGAAAAAAATTCTCTCAATTGTGGTTACACGATTCTGTTATTCCT
AATGGATATGCTAAAAAATTTAGAATTGTAAGATATTATAGAATGAATGC
TAAAGAAAGAGCGTATAATATTGAGCGAGATAAAAAAAGAGCTTACTATA
TTGGGTATCTTAAAAATTTAAAAGAACTTTATTTACAACAAAACGAACTA
GAAAAACTACCCAAAAGTTTCTCATATCTAACTAAATTACAAAAGATAAA
CCTTAGTTTAAATAAGTTTCAAGTCTTTCCGAAAACAATTTTCAATTTTA
AACTTCTTGAATATATTAATGTTAGCGGAAATAAAATAAAAGTACTTCCT
AAGCAAATTGGTCTTTTAAAGAGGTTAACATATTTAAATATTTCAGAGAA
TAGAATAAGTACAATTCCGACAAGATTATATGTTTTACGAAAATTAAAAA
AAGCCAATTTTCATTTTAATAATAATTTACTTTCTGATGTTATTATAAAG
GAAATAGATGAAAAATTAGGGAAAATAAAATCGAGTCCTAAAAAAAAGAA
GGTAAAAGAAGCGCCATCAAAAACACTAAGAAAAGCATCTGAAAACTTAT
TAGAGGATGAAACTAAAAGTATTAAAGGTATTTCTGGTTTATTTATTTTT
AGAGATTTAGGTTTAATTATACTCATTCCTTTTTTATTGTACTTGTTCTT
TAAGTATAACGAGAATATGGATTTGAAGATAGAAGAAGATAAAATCAAAA
AAGATAAAGAAGCGTATGCTTTGGCTGTTCAAAATATGAAGGCATCCAAA
GAAAGAATATTAGAAAAAACAAAAGAAATTTACGTATATACAAATGATAC
TGCTAGTTTAAAATTAACGATTGCTGCAAATGCATATTTTTCTGATTTAG
AATTTAATAAGAGGTATACGTATATGTTTAAAAGAAAGACAAAGTATATC
AATAAATTTTTAAACAATAAAAGTTACGGTTACAAAGGAGTTATAGATAA
ATGTAGAAAAAAATTCTCTCAATTGTGGTTACACGATTCTGTTATTCCTA
ATGGATATGCTAAAAAATTTAGAATTGTAAGATATTATAGAATGAATGCT
AAAGAAAGAGCGTATAATATTGAGCGAGATAAAAAAAGAGCTTACTAT back to top
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