prot_P-canaliculata_contig10165.257.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10165.257.1
Unique Nameprot_P-canaliculata_contig10165.257.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length89
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10165.257.1 vs. uniprot
Match: A0A6H5JSR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.740e-16
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 0 
Query:   25 LTVLSVSVDGKIVAWDAVVKSERYHMQHPPDEEVASMLVLPGGQLMATGTGNGNVRFWRLDTGVG 89
            L VLS S++G I AW+ + KSE+Y M+H    EV SMLVLPGG ++ TGT +G+VRFW+LDTG G
Sbjct:   95 LVVLSASLNGVIRAWETLGKSEKYCMRHSGGAEVTSMLVLPGGSVLVTGTDDGSVRFWQLDTGAG 159
[Close]
BLAST of mRNA_P-canaliculata_contig10165.257.1 vs. uniprot
Match: D8LC79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC79_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 9.940e-16
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 0 
Query:   25 LTVLSVSVDGKIVAWDAVVKSERYHMQHPPDEEVASMLVLPGGQLMATGTGNGNVRFWRLDTGVG 89
            L VLS S++G I AW+ + KSE+Y M+H    EV SMLVLPGG ++ TGT +G+VRFW+LDTG G
Sbjct:  567 LVVLSASMNGVIRAWETLGKSEKYCMRHSGGVEVTSMLVLPGGSVLVTGTDDGSVRFWQLDTGAG 631
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10165.257.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSR9_9PHAE3.740e-1658.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC79_ECTSI9.940e-1658.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 16..89
e-value: 8.7E-9
score: 36.8
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 27..41
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 27..89
score: 9.573
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 27..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10165contigP-canaliculata_contig10165:1980..2426 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10165.257.1mRNA_P-canaliculata_contig10165.257.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10165 1980..2426 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10165.257.1 ID=prot_P-canaliculata_contig10165.257.1|Name=mRNA_P-canaliculata_contig10165.257.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=89bp
YQPDEDQLDDGTPNEEEKIEGDLVLTVLSVSVDGKIVAWDAVVKSERYHM
QHPPDEEVASMLVLPGGQLMATGTGNGNVRFWRLDTGVG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR011047Quinoprotein_ADH-like_supfam