prot_P-canaliculata_contig101577.246.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig101577.246.1
Unique Nameprot_P-canaliculata_contig101577.246.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length123
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig101577.246.1 vs. uniprot
Match: A0A5C6DFK5_9BACT (PEP-CTERM domain-containing protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6DFK5_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 2.480e-9
Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = 0 
Query:    4 ESSNINFNEFLTFSFDTDVVFDEIDFFGISGTETVVG-TVDGSS--FDFTNNQDGGSDLVLDPFESLVIGAGTDVSFAFADGTGNANAFGINDFTVT--AVPEPSSLALLGFCGLAIAGRRR 120
            ES + N  E     FD +V+  E +F  I G +     TV+G+   F FT+   G  D   DP   LV+ AGTDV+FA A GT       I++ +VT  A+PEPSSLA+LG  G+ +  RRR
Sbjct:  120 ESGDFNPGEAWVIEFDKNVMITEFNFSSIDGVDEFFDVTVEGNPTVFSFTDGTSG--DDFADPLSGLVVAAGTDVTFA-ARGTIGGTNIRISEISVTVVAIPEPSSLAVLGLGGMMMFVRRR 238
[Close]
BLAST of mRNA_P-canaliculata_contig101577.246.1 vs. uniprot
Match: A0A1M6SA19_9BACT (PEP-CTERM protein-sorting domain-containing protein n=1 Tax=Rubritalea squalenifaciens DSM 18772 TaxID=1123071 RepID=A0A1M6SA19_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 3.280e-5
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 0 
Query:   61 LDPFESLVIGAGTDVSFAF--ADGTGNANAFGINDFTVTAVPEPSSLALLGFCGLAIAGRRRR 121
            LD ++SL++ AG  ++ A   +DG      + + D  VTAVPEPSS AL+G  GL    RRRR
Sbjct:  196 LDGYDSLILNAGDTLTLATDTSDGLATQGGWALTDIEVTAVPEPSSTALIGLAGLGFILRRRR 258
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101577.246.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5C6DFK5_9BACT2.480e-940.98PEP-CTERM domain-containing protein n=1 Tax=Novipi... [more]
A0A1M6SA19_9BACT3.280e-544.44PEP-CTERM protein-sorting domain-containing protei... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013424PEP-CTERM protein-sorting domainTIGRFAMTIGR02595TIGR02595coord: 99..121
e-value: 3.4E-5
score: 22.4
IPR013424PEP-CTERM protein-sorting domainPFAMPF07589PEP-CTERMcoord: 98..120
e-value: 7.8E-7
score: 28.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101577contigP-canaliculata_contig101577:210..578 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101577.246.1mRNA_P-canaliculata_contig101577.246.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig101577 210..578 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig101577.246.1 ID=prot_P-canaliculata_contig101577.246.1|Name=mRNA_P-canaliculata_contig101577.246.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=123bp
VDFESSNINFNEFLTFSFDTDVVFDEIDFFGISGTETVVGTVDGSSFDFT
NNQDGGSDLVLDPFESLVIGAGTDVSFAFADGTGNANAFGINDFTVTAVP
EPSSLALLGFCGLAIAGRRRRV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013424PEP_exosort_dom