mRNA_P-canaliculata_contig101577.246.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig101577.246.1 vs. uniprot
Match: A0A5C6DFK5_9BACT (PEP-CTERM domain-containing protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6DFK5_9BACT) HSP 1 Score: 62.8 bits (151), Expect = 2.480e-9 Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = 1 Query: 10 ESSNINFNEFLTFSFDTDVVFDEIDFFGISGTETVVG-TVDGSS--FDFTNNQDGGSDLVLDPFESLVIGAGTDVSFAFADGTGNANAFGINDFTVT--AVPEPSSLALLGFCGLAIAGRRR 360
ES + N E FD +V+ E +F I G + TV+G+ F FT+ G D DP LV+ AGTDV+FA A GT I++ +VT A+PEPSSLA+LG G+ + RRR
Sbjct: 120 ESGDFNPGEAWVIEFDKNVMITEFNFSSIDGVDEFFDVTVEGNPTVFSFTDGTSG--DDFADPLSGLVVAAGTDVTFA-ARGTIGGTNIRISEISVTVVAIPEPSSLAVLGLGGMMMFVRRR 238
BLAST of mRNA_P-canaliculata_contig101577.246.1 vs. uniprot
Match: A0A1M6SA19_9BACT (PEP-CTERM protein-sorting domain-containing protein n=1 Tax=Rubritalea squalenifaciens DSM 18772 TaxID=1123071 RepID=A0A1M6SA19_9BACT) HSP 1 Score: 51.6 bits (122), Expect = 3.280e-5 Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 181 LDPFESLVIGAGTDVSFAF--ADGTGNANAFGINDFTVTAVPEPSSLALLGFCGLAIAGRRRR 363
LD ++SL++ AG ++ A +DG + + D VTAVPEPSS AL+G GL RRRR
Sbjct: 196 LDGYDSLILNAGDTLTLATDTSDGLATQGGWALTDIEVTAVPEPSSTALIGLAGLGFILRRRR 258 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101577.246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101577.246.1 >prot_P-canaliculata_contig101577.246.1 ID=prot_P-canaliculata_contig101577.246.1|Name=mRNA_P-canaliculata_contig101577.246.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=123bp VDFESSNINFNEFLTFSFDTDVVFDEIDFFGISGTETVVGTVDGSSFDFTback to top mRNA from alignment at P-canaliculata_contig101577:210..578- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101577.246.1 ID=mRNA_P-canaliculata_contig101577.246.1|Name=mRNA_P-canaliculata_contig101577.246.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at P-canaliculata_contig101577:210..578- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101577:210..578- >mRNA_P-canaliculata_contig101577.246.1 ID=mRNA_P-canaliculata_contig101577.246.1|Name=mRNA_P-canaliculata_contig101577.246.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at P-canaliculata_contig101577:210..578- (Pelvetia canaliculata dioecious)back to top |