prot_P-canaliculata_contig9981.24097.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig9981.24097.1
Unique Name	prot_P-canaliculata_contig9981.24097.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	138

Homology

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: A0A3P3YW96_PLABS (Cytochrome c oxidase subunit 1 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YW96_PLABS)

HSP 1 Score: 124 bits (310), Expect = 7.820e-31
Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 0

Query:   15 FFWTPRSLHFNLAWFWYHKSHFRYFFRKAYFWLFGM-LNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 123
            FF   RS++FN    WY+KS++R  F+K YFW F   L  ++ IG LG IVWAHHM+TVG+D+ TRAY  AA MIIAVPTGIK+FSW  TMWGG I+  T V+    F++
Sbjct:  229 FFGHSRSIYFNFTSIWYNKSNYRIIFKKTYFWFFRYGLCVMLCIGFLGFIVWAHHMYTVGLDVDTRAYFTAATMIIAVPTGIKVFSWLVTMWGGVIQFNTSVLFTFGFLF 338

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: D6MQM8_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=28 Tax=Phaeophyceae TaxID=2870 RepID=D6MQM8_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.300e-30
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 0

Query:   41 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 123
            RK  F   GM+ A++ IG+LG IVWAHHMFTVG+DI TRAY  AA MIIAVPTGIKIFSW ATMWGGSIRLKTP++ +  F++
Sbjct:   26 RKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIRLKTPMLFSIGFLF 108

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: B4XPK9_9LILI (Cytochrome c oxidase subunit 1 (Fragment) n=9 Tax=Mesangiospermae TaxID=1437183 RepID=B4XPK9_9LILI)

HSP 1 Score: 115 bits (287), Expect = 2.840e-29
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 0

Query:   41 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 123
            RKA F   GM+ A+I IG+LG +VWAHHMFTVG+D+ TRAY  AA MIIAVPTGIKIFSW ATMWGGSI+ KTP++    FI+
Sbjct:  123 RKAVFGYLGMVYAMISIGLLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQFKTPMLFAFGFIF 205

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: M1EYI5_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=Fucales TaxID=3009 RepID=M1EYI5_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.210e-29
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 0

Query:   41 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 123
            RK  F   GM+ A++ IG+LG IVWAHHMFTVG+DI TRAY  AA MIIAVPTGIKIFSW ATMWGGSIRLKTP++ +  F++
Sbjct:  234 RKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIRLKTPMLFSIGFLF 316

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: M1F017_SARFS (Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=Fucales TaxID=3009 RepID=M1F017_SARFS)

HSP 1 Score: 118 bits (295), Expect = 4.580e-29
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 0

Query:   41 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 123
            RK  F   GM+ A++ IG+LG IVWAHHMFTVG+DI TRAY  AA MIIAVPTGIKIFSW ATMWGGSIRLKTP++ +  F++
Sbjct:  234 RKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWVATMWGGSIRLKTPMLFSIGFLF 316

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: Q33518_9BRYO (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Embryophyta TaxID=3193 RepID=Q33518_9BRYO)

HSP 1 Score: 112 bits (279), Expect = 5.090e-29
Identity = 57/83 (68.67%), Postives = 64/83 (77.11%), Query Frame = 0

Query:   41 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 123
            RK  F   GM+ A+I IGVLG IVWAHHMFTVG D+ TRAY  AA MIIAVPTGIKIFSW ATMWGGSI+ KTP++    FI+
Sbjct:   46 RKPVFGYPGMVYAMISIGVLGFIVWAHHMFTVGSDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIF 128

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: A0A8J5WG91_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WG91_ZIZPA)

HSP 1 Score: 114 bits (284), Expect = 7.260e-29
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 0

Query:   41 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 123
            RK  F   GM+ A+I IGVLG +VWAHHMFTVG+D+ TRAY  AA MIIAVPTGIKIFSW ATMWGGSI+ KTP++    FI+
Sbjct:   59 RKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIF 141

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: A0A6M3TIB1_9FLOR (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Sebdenia monnardiana TaxID=2651872 RepID=A0A6M3TIB1_9FLOR)

HSP 1 Score: 111 bits (278), Expect = 9.310e-29
Identity = 55/83 (66.27%), Postives = 64/83 (77.11%), Query Frame = 0

Query:   41 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 123
            RK  F   GM+ A+I IG+LG IVWAHHM+TVG+D+ TRAY  AA MIIAVPTGIKIFSW ATMW GSI LKTP++    FI+
Sbjct:   25 RKPVFGYIGMVYAMISIGILGFIVWAHHMYTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWEGSIHLKTPMLFAIGFIF 107

[Close]

BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: D4HL93_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=24 Tax=Fucales TaxID=3009 RepID=D4HL93_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.020e-28
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 0

Query:   41 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 123
            RK  F   GM+ A++ IG+LG IVWAHHMFTVG+DI TRAY  AA MIIAVPTGIKIFSW ATMWGGSIRLKTP++ +  F++
Sbjct:  248 RKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIRLKTPMLFSIGFLF 330

[Close]

BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: A0A7G8JUP5_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Pythium sp. CAL-2011f TaxID=983703 RepID=A0A7G8JUP5_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.030e-28
Identity = 52/83 (62.65%), Postives = 67/83 (80.72%), Query Frame = 0

Query:   41 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 123
            +K  F   GM+ A++ IG+LG IVWAHHMFTVG+D+ TRAY +AA MIIAVPTGIKIFSW ATMWGGS++ +TP++ N  F++
Sbjct:   59 KKNVFGYLGMVYAMLSIGLLGCIVWAHHMFTVGLDVDTRAYFSAATMIIAVPTGIKIFSWLATMWGGSLKYETPMLFNLGFLF 141

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A3P3YW96_PLABS	7.820e-31	55.45	Cytochrome c oxidase subunit 1 n=1 Tax=Plasmodioph...	[more]
D6MQM8_9PHAE	1.300e-30	68.67	Cytochrome c oxidase subunit 1 (Fragment) n=28 Tax...	[more]
B4XPK9_9LILI	2.840e-29	67.47	Cytochrome c oxidase subunit 1 (Fragment) n=9 Tax=...	[more]
M1EYI5_9PHAE	3.210e-29	68.67	Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=...	[more]
M1F017_SARFS	4.580e-29	68.67	Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=...	[more]
Q33518_9BRYO	5.090e-29	68.67	Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=...	[more]
A0A8J5WG91_ZIZPA	7.260e-29	67.47	Uncharacterized protein n=1 Tax=Zizania palustris ...	[more]
A0A6M3TIB1_9FLOR	9.310e-29	66.27	Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=...	[more]
D4HL93_9PHAE	1.020e-28	68.67	Cytochrome c oxidase subunit 1 (Fragment) n=24 Tax...	[more]
A0A7G8JUP5_9STRA	1.030e-28	62.65	Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000883	Cytochrome c oxidase subunit I	PRINTS	PR01165	CYCOXIDASEI	coord: 58..73 score: 79.64 coord: 82..103 score: 67.65
IPR000883	Cytochrome c oxidase subunit I	PFAM	PF00115	COX1	coord: 49..121 e-value: 1.6E-17 score: 63.5
IPR000883	Cytochrome c oxidase subunit I	PANTHER	PTHR10422	CYTOCHROME C OXIDASE SUBUNIT 1	coord: 38..122
IPR036927	Cytochrome c oxidase-like, subunit I superfamily	GENE3D	1.20.210.10		coord: 11..129 e-value: 7.7E-23 score: 82.5
IPR036927	Cytochrome c oxidase-like, subunit I superfamily	SUPERFAMILY	81442	Cytochrome c oxidase subunit I-like	coord: 10..125
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 43..68
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 69..79
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..31
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 80..102
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 32..42
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 103..137
None	No IPR available	TMHMM	TMhelix		coord: 81..103
None	No IPR available	TMHMM	TMhelix		coord: 10..32
None	No IPR available	TMHMM	TMhelix		coord: 44..66
IPR023616	Cytochrome c oxidase-like, subunit I domain	PROSITE	PS50855	COX1	coord: 15..116 score: 17.452

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig9981	contig	P-canaliculata_contig9981:8137..8550 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig9981.24097.1	mRNA_P-canaliculata_contig9981.24097.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig9981 8012..11466 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig9981.24097.1 ID=prot_P-canaliculata_contig9981.24097.1|Name=mRNA_P-canaliculata_contig9981.24097.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=138bp
MTLVVQDGRTTFILFFWTPRSLHFNLAWFWYHKSHFRYFFRKAYFWLFGM
LNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSW
TATMWGGSIRLKTPVICNRFFIYHWRFNRCGISKFWC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000883	Cyt_C_Oxase_1
IPR036927	Cyt_c_oxase-like_su1_sf
IPR023616	Cyt_c_oxase-like_su1_dom