mRNA_P-canaliculata_contig9981.24097.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: B7XCR5_CHAMQ (Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=Chattonella marina TaxID=90936 RepID=B7XCR5_CHAMQ) HSP 1 Score: 117 bits (294), Expect = 5.790e-27 Identity = 75/154 (48.70%), Postives = 97/154 (62.99%), Query Frame = 2 Query: 1811 HLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPPCGEVL----------LDLKH-LSFAIGF--LFTIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
HLF FFGHPEVYILILPG GI+SHI+ TFS+KP+FGYLG V+ +S G++ + W + + L + F ++ +P ++ +DLK + FA+GF LFT+GG+TGVVLANSGVDIALHDTYYVVAHF
Sbjct: 1 HLFWFFGHPEVYILILPGFGIVSHIVSTFSKKPVFGYLGM-------VYAMMSIGVLGFI--VWAHHMYTVGLDIDTRAYFTAA-TMIIAVPTGIKIFGWIATMWGGSIDLKTPMLFAVGFIFLFTVGGVTGVVLANSGVDIALHDTYYVVAHF 144
BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: D6MQM8_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=28 Tax=Phaeophyceae TaxID=2870 RepID=D6MQM8_9PHAE) HSP 1 Score: 117 bits (293), Expect = 2.050e-26 Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 1 Query: 1900 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 2148
RK F GM+ A++ IG+LG IVWAHHMFTVG+DI TRAY AA MIIAVPTGIKIFSW ATMWGGSIRLKTP++ + F++
Sbjct: 26 RKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIRLKTPMLFSIGFLF 108
BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: A0A3P3YW96_PLABS (Cytochrome c oxidase subunit 1 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YW96_PLABS) HSP 1 Score: 123 bits (309), Expect = 2.810e-26 Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 1 Query: 1822 FFWTPRSLHFNLAWFWYHKSHFRYFFRKAYFWLFGM-LNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 2148
FF RS++FN WY+KS++R F+K YFW F L ++ IG LG IVWAHHM+TVG+D+ TRAY AA MIIAVPTGIK+FSW TMWGG I+ T V+ F++
Sbjct: 229 FFGHSRSIYFNFTSIWYNKSNYRIIFKKTYFWFFRYGLCVMLCIGFLGFIVWAHHMYTVGLDVDTRAYFTAATMIIAVPTGIKVFSWLVTMWGGVIQFNTSVLFTFGFLF 338
BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: A0A8J5WG91_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WG91_ZIZPA) HSP 1 Score: 117 bits (292), Expect = 5.000e-26 Identity = 76/155 (49.03%), Postives = 93/155 (60.00%), Query Frame = 2 Query: 1808 QHLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPP-----------CGEVLLDLKHLSFAIGF--LFTIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
QHLF FFGHPEVYILILPG GIISHI+ TFS KP+FGYLG V+ +S G++ L W + + L + F ++ +P G + + FA+GF LFTIGGLTG+VLANSG+DIALHDTYYVVAHF
Sbjct: 28 QHLFWFFGHPEVYILILPGFGIISHIVSTFSRKPVFGYLGM-------VYAMISIGVLGFL--VWAHHMFTVGLDVDTRAYFTAA-TMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHF 172
BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: Q31705_ARATH (Cytochrome c oxidase subunit 1 (Fragment) n=9 Tax=Spermatophyta TaxID=58024 RepID=Q31705_ARATH) HSP 1 Score: 116 bits (290), Expect = 1.390e-25 Identity = 76/155 (49.03%), Postives = 93/155 (60.00%), Query Frame = 2 Query: 1808 QHLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPP-----------CGEVLLDLKHLSFAIGF--LFTIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
QHLF FFGHPEVYILILPG GIISHI+ TFS KP+FGYLG V+ +S G++ L W + + L + F ++ +P G + + FA+GF LFTIGGLTG+VLANSG+DIALHDTYYVVAHF
Sbjct: 29 QHLFWFFGHPEVYILILPGFGIISHIVSTFSGKPVFGYLGM-------VYAMISIGVLGFL--VWAHHMFTVGLDVDTRAYFTAA-TMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHF 173
BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: M1F017_SARFS (Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=Fucales TaxID=3009 RepID=M1F017_SARFS) HSP 1 Score: 120 bits (300), Expect = 1.480e-25 Identity = 80/156 (51.28%), Postives = 94/156 (60.26%), Query Frame = 2 Query: 1808 QHLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPPC------------GEVLLDLKHLSFAIGFLF--TIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
QHLF FFGHPEVYILILPG GI+SHIL TFS KP+FGYLG V+ LS G++ + W + + L + F ++ +P G + L L F+IGFLF TIGGLTGVVLANSGVDIALHDTYYVVAHF
Sbjct: 203 QHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGM-------VYAMLSIGILGFI--VWAHHMFTVGLDIDTRAYFTAA-TMIIAVPTGIKIFSWVATMWGGSIRLKTPML-FSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHF 347
BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: B4XPF8_9LAMI (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Sibthorpia peregrina TaxID=489688 RepID=B4XPF8_9LAMI) HSP 1 Score: 118 bits (296), Expect = 2.830e-25 Identity = 77/155 (49.68%), Postives = 94/155 (60.65%), Query Frame = 2 Query: 1808 QHLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPP-----------CGEVLLDLKHLSFAIGF--LFTIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
QHLF FFGHPEVYILILPGSGIISHI+ TFS KP+FGYLG V+ +S G++ L W + + L + F ++ +P G + + FA+GF LFTIGGLTG+VLANSG+DIALHDTYYVVAHF
Sbjct: 75 QHLFWFFGHPEVYILILPGSGIISHIVSTFSGKPVFGYLGM-------VYAMISIGVLGFL--VWAHHMFTVGLDVDTRAYFTAA-TMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHF 219
BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: A0A0U4ZTN0_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U4ZTN0_9PHAE) HSP 1 Score: 120 bits (300), Expect = 2.880e-25 Identity = 80/156 (51.28%), Postives = 94/156 (60.26%), Query Frame = 2 Query: 1808 QHLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPPC------------GEVLLDLKHLSFAIGFLF--TIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
QHLF FFGHPEVYILILPG GI+SHIL TF+ KP+FGYLG V+ LS G++ + W + + L + F ++ +P G + L L FAIGFLF TIGGLTGVVLANSGVDIALHDTYYVVAHF
Sbjct: 155 QHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGM-------VYAMLSIGILGFI--VWAHHMFTVGLDIDTRAYFTAA-TMIIAVPTGIKIFSWIATLWGGSIRLKTPML-FAIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHF 299
BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: Q8W9F8_MUSAC (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Mesangiospermae TaxID=1437183 RepID=Q8W9F8_MUSAC) HSP 1 Score: 119 bits (298), Expect = 3.420e-25 Identity = 77/155 (49.68%), Postives = 95/155 (61.29%), Query Frame = 2 Query: 1808 QHLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPP-----------CGEVLLDLKHLSFAIG--FLFTIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
QHLF FFGHPEVYILILPGSGIISHI+ TFS+KP+FGYLG V+ +S G++ L W + + L + F ++ +P G + + FA+G FLFTIGGLTG+VLANSG+DIALHDTYYVVAHF
Sbjct: 180 QHLFRFFGHPEVYILILPGSGIISHIVSTFSKKPVFGYLGM-------VYAMISIGVLGFL--VWAHHMFTVGLDVDTRAYFTAA-TMIIAVPTGIKIFSWIATMWGGSIQFKTPMLFAVGSIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHF 324
BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: B4XPK9_9LILI (Cytochrome c oxidase subunit 1 (Fragment) n=9 Tax=Mesangiospermae TaxID=1437183 RepID=B4XPK9_9LILI) HSP 1 Score: 114 bits (286), Expect = 3.510e-25 Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 1900 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 2148
RKA F GM+ A+I IG+LG +VWAHHMFTVG+D+ TRAY AA MIIAVPTGIKIFSW ATMWGGSI+ KTP++ FI+
Sbjct: 123 RKAVFGYLGMVYAMISIGLLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQFKTPMLFAFGFIF 205 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9981.24097.1 >prot_P-canaliculata_contig9981.24097.1 ID=prot_P-canaliculata_contig9981.24097.1|Name=mRNA_P-canaliculata_contig9981.24097.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=138bp MTLVVQDGRTTFILFFWTPRSLHFNLAWFWYHKSHFRYFFRKAYFWLFGMback to top mRNA from alignment at P-canaliculata_contig9981:8012..11466- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9981.24097.1 ID=mRNA_P-canaliculata_contig9981.24097.1|Name=mRNA_P-canaliculata_contig9981.24097.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3455bp|location=Sequence derived from alignment at P-canaliculata_contig9981:8012..11466- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9981:8012..11466- >mRNA_P-canaliculata_contig9981.24097.1 ID=mRNA_P-canaliculata_contig9981.24097.1|Name=mRNA_P-canaliculata_contig9981.24097.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at P-canaliculata_contig9981:8012..11466- (Pelvetia canaliculata dioecious)back to top |