prot_P-canaliculata_contig9941.24054.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9941.24054.1
Unique Nameprot_P-canaliculata_contig9941.24054.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length317
Homology
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BLAST of mRNA_P-canaliculata_contig9941.24054.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 2.970e-84
Identity = 212/338 (62.72%), Postives = 241/338 (71.30%), Query Frame = 0 
Query:    1 SLLLYKVVAGAAVAGKWASHGRPLVERMESVGVPSREVRSWTAVLLPLSRLGCADACLEVLAMMDSVLGVEHAA-------PNGSGDRDRRHSRADSRRVL--------------LDRQEALLTVAHNHCMYAYIKAGRGAFRPLSPSQNRSTDRLIDRSQRADTYCYVSAMKALGAAGLWEAAVTLLQELRDLEGVAPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGEWERAVQELEAAEEDDLPVSTPAFNAALKAFAIAKALKPGLDFFRRMQEEGRIPLDEQTYNIAIELCKECGDTSKALGILRSMSAAG 317
            +L + KV AGAAVAG+W +HGRPLV RM S+GVP  +V SWTAVLLPLSRLGCAD CLEVL +M+  +G+  A        P+  G         + +  L              LDR+  LLTVAHNHCM+A+IKAGR    P  P   R     I  + +ADTY YV+AMKA+GAAG WE AV+LL ELR+LEGV+P XXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXX        VQEL AAEE  LPVSTPA+NAALKAFAI KAL+PGLDFFRRMQEEGR+PLDEQT+NIAIELCKECGDTS A+GILR+M  AG
Sbjct:  473 ALRMGKVAAGAAVAGRWETHGRPLVLRMGSLGVPEGDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTATAAATPGVPHSGGRNGSAAPTGEEKHALGVAPREHGMDFFHGLDRRNELLTVAHNHCMFAFIKAGRETIPPPPPFPPRDPPSTI--TCKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSPXXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXX-XXVQELIAAEEGGLPVSTPAYNAALKAFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRAMEGAG 807
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BLAST of mRNA_P-canaliculata_contig9941.24054.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 3.770e-70
Identity = 212/400 (53.00%), Postives = 238/400 (59.50%), Query Frame = 0 
Query:    8 VAGAAVAGKWASHGRPLVERMESVGVPSREVRSWTAVLLPLSRLGCADACLEVLAMMDSVLGVEHAAP------------NGSGDRDRRHSRADSRRVL--------LDRQEALLTVAHNHCMYAYIKAGR----------------------------------GAFRP-----------------LSPS-----------QNRSTDR--------LIDRSQRADTYCYVSAMKALGAAGLWEAAVTLLQELRDLEGVAPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGEWERAVQELEAAEEDDLPVSTPAFNAALKAFAIAKALKPGLDFFRRMQEEGRIPLDEQTYNIAIELCKECGDTSKALGILRSMSAAG 317
            V+GAAVAG+W +HGRPLV RM S+GV   +V SWTAVLLPLSRLGCAD CLEVL +M+  +G+  AA             NGS         A    +L        LDR+  LLTVAHNHCM+A+IKAGR                                  GA RP                 LSP            Q    DR        +  R  +ADTY YV+AMKA+GAAG WE AV+LL ELR+LE     XXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXX          EL AAEE  LPVSTPA+NAALKAFAI KAL+PGL+FFRRMQEEGR+PLDEQT+NIAIELCKECGDTS A+GILR+M  AG
Sbjct:  359 VSGAAVAGRWETHGRPLVLRMGSLGVSEGDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTAAATATPGVPRSGRRNGSAAPTGGEKHALGAALLDGMDFFHDLDRRNELLTVAHNHCMFAFIKAGRHEEAVKHFDTYFRRPQPADVTSWTHHGTGTVKGQGAGRPWDGSEPDPCGVEHDESVLSPDIFSYTHLMSSLQKLGRDRACLSALYEMRARGIKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXXQVELIAAEEGGLPVSTPAYNAALKAFAIGKALQPGLEFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRTMEGAG 758
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9941.24054.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9B5_ECTSI2.970e-8462.72PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZI4_9PHAE3.770e-7053.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 103..209
e-value: 2.7E-10
score: 42.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 219..317
e-value: 1.1E-14
score: 56.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 178..228
e-value: 9.1E-11
score: 41.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 146..172
e-value: 0.6
score: 10.5
coord: 289..315
e-value: 0.1
score: 12.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 181..216
e-value: 0.0017
score: 16.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 215..249
score: 7.552
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 250..284
score: 8.385
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 179..214
score: 11.674
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 37..67
score: 5.251
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 143..177
score: 7.465
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 286..317
score: 9.109
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 142..314

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9941contigP-canaliculata_contig9941:2516..11086 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9941.24054.1mRNA_P-canaliculata_contig9941.24054.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9941 2516..11086 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9941.24054.1 ID=prot_P-canaliculata_contig9941.24054.1|Name=mRNA_P-canaliculata_contig9941.24054.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=317bp
SLLLYKVVAGAAVAGKWASHGRPLVERMESVGVPSREVRSWTAVLLPLSR
LGCADACLEVLAMMDSVLGVEHAAPNGSGDRDRRHSRADSRRVLLDRQEA
LLTVAHNHCMYAYIKAGRGAFRPLSPSQNRSTDRLIDRSQRADTYCYVSA
MKALGAAGLWEAAVTLLQELRDLEGVAPDVYVYTAAISACSTAGSRWEEA
LSLEGDMRRRGIKPNAYTVTSCISALARGGEWERAVQELEAAEEDDLPVS
TPAFNAALKAFAIAKALKPGLDFFRRMQEEGRIPLDEQTYNIAIELCKEC
GDTSKALGILRSMSAAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat