mRNA_P-canaliculata_contig9941.24054.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9941.24054.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI) HSP 1 Score: 287 bits (734), Expect = 2.970e-84 Identity = 212/338 (62.72%), Postives = 241/338 (71.30%), Query Frame = 1 Query: 1 SLLLYKVVAGAAVAGKWASHGRPLVERMESVGVPSREVRSWTAVLLPLSRLGCADACLEVLAMMDSVLGVEHAA-------PNGSGDRDRRHSRADSRRVL--------------LDRQEALLTVAHNHCMYAYIKAGRGAFRPLSPSQNRSTDRLIDRSQRADTYCYVSAMKALGAAGLWEAAVTLLQELRDLEGVAPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGEWERAVQELEAAEEDDLPVSTPAFNAALKAFAIAKALKPGLDFFRRMQEEGRIPLDEQTYNIAIELCKECGDTSKALGILRSMSAAG 951
+L + KV AGAAVAG+W +HGRPLV RM S+GVP +V SWTAVLLPLSRLGCAD CLEVL +M+ +G+ A P+ G + + L LDR+ LLTVAHNHCM+A+IKAGR P P R I + +ADTY YV+AMKA+GAAG WE AV+LL ELR+LEGV+P XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXX VQEL AAEE LPVSTPA+NAALKAFAI KAL+PGLDFFRRMQEEGR+PLDEQT+NIAIELCKECGDTS A+GILR+M AG
Sbjct: 473 ALRMGKVAAGAAVAGRWETHGRPLVLRMGSLGVPEGDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTATAAATPGVPHSGGRNGSAAPTGEEKHALGVAPREHGMDFFHGLDRRNELLTVAHNHCMFAFIKAGRETIPPPPPFPPRDPPSTI--TCKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSPXXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXX-XXVQELIAAEEGGLPVSTPAYNAALKAFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRAMEGAG 807
BLAST of mRNA_P-canaliculata_contig9941.24054.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE) HSP 1 Score: 246 bits (629), Expect = 3.770e-70 Identity = 212/400 (53.00%), Postives = 238/400 (59.50%), Query Frame = 1 Query: 22 VAGAAVAGKWASHGRPLVERMESVGVPSREVRSWTAVLLPLSRLGCADACLEVLAMMDSVLGVEHAAP------------NGSGDRDRRHSRADSRRVL--------LDRQEALLTVAHNHCMYAYIKAGR----------------------------------GAFRP-----------------LSPS-----------QNRSTDR--------LIDRSQRADTYCYVSAMKALGAAGLWEAAVTLLQELRDLEGVAPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGEWERAVQELEAAEEDDLPVSTPAFNAALKAFAIAKALKPGLDFFRRMQEEGRIPLDEQTYNIAIELCKECGDTSKALGILRSMSAAG 951
V+GAAVAG+W +HGRPLV RM S+GV +V SWTAVLLPLSRLGCAD CLEVL +M+ +G+ AA NGS A +L LDR+ LLTVAHNHCM+A+IKAGR GA RP LSP Q DR + R +ADTY YV+AMKA+GAAG WE AV+LL ELR+LE XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXX EL AAEE LPVSTPA+NAALKAFAI KAL+PGL+FFRRMQEEGR+PLDEQT+NIAIELCKECGDTS A+GILR+M AG
Sbjct: 359 VSGAAVAGRWETHGRPLVLRMGSLGVSEGDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTAAATATPGVPRSGRRNGSAAPTGGEKHALGAALLDGMDFFHDLDRRNELLTVAHNHCMFAFIKAGRHEEAVKHFDTYFRRPQPADVTSWTHHGTGTVKGQGAGRPWDGSEPDPCGVEHDESVLSPDIFSYTHLMSSLQKLGRDRACLSALYEMRARGIKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXXQVELIAAEEGGLPVSTPAYNAALKAFAIGKALQPGLEFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRTMEGAG 758 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9941.24054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9941.24054.1 >prot_P-canaliculata_contig9941.24054.1 ID=prot_P-canaliculata_contig9941.24054.1|Name=mRNA_P-canaliculata_contig9941.24054.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=317bp SLLLYKVVAGAAVAGKWASHGRPLVERMESVGVPSREVRSWTAVLLPLSRback to top mRNA from alignment at P-canaliculata_contig9941:2516..11086- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9941.24054.1 ID=mRNA_P-canaliculata_contig9941.24054.1|Name=mRNA_P-canaliculata_contig9941.24054.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=8571bp|location=Sequence derived from alignment at P-canaliculata_contig9941:2516..11086- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9941:2516..11086- >mRNA_P-canaliculata_contig9941.24054.1 ID=mRNA_P-canaliculata_contig9941.24054.1|Name=mRNA_P-canaliculata_contig9941.24054.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at P-canaliculata_contig9941:2516..11086- (Pelvetia canaliculata dioecious)back to top |