prot_P-canaliculata_contig98995.24016.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig98995.24016.1
Unique Nameprot_P-canaliculata_contig98995.24016.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length193
Homology
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BLAST of mRNA_P-canaliculata_contig98995.24016.1 vs. uniprot
Match: UPI0016757E35 (pentapeptide repeat-containing protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0016757E35)

HSP 1 Score: 121 bits (304), Expect = 1.630e-28
Identity = 67/195 (34.36%), Postives = 113/195 (57.95%), Query Frame = 0 
Query:    2 TFTRNKNDIYKTLIDR----SAVKVRHLLGP----SRFKSVLQHIAVAIWHSG-DRAIPLSEIYDSIENADVQAAFQALNLQGRDAAPPPDLSLTAIYFAPPQEGASSDQSVAEFAHKSFSEYLVSASLFDSFTRLISAFETGDNFKTALRHWVRQASEGDHDPGLADFCQKEAGLRFESLSELDWNTALPILKS 187
            T+ +NKN +Y  +ID+    S  ++  L  P      F+++LQHIA+A W  G    I + ++  SI++   +  F++L+     +   P  +L+ +++      + S+++V  F HK+FS+YL+S  +FD+F  LIS F  G +F  AL +W+   +    DP +ADFC+ EA LR++ L  LDW+TAL +LK+
Sbjct:  419 TYVKNKNSVYDAIIDQVRQESIWRIETLKNPILEKDDFRAILQHIALANWKGGAGHQISVRQVERSIKDKRTRKIFRSLSFYSSPSRDDPTDNLSTVFYY--GLNSPSEENVLTFTHKTFSDYLLSTLIFDAFIYLISCFSRGHDFDRALSNWLSICAAKSQDPSIADFCEHEAKLRYDDLDNLDWDTALQLLKA 611
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98995.24016.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0016757E351.630e-2834.36pentapeptide repeat-containing protein n=1 Tax=Lit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98995contigP-canaliculata_contig98995:60..638 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98995.24016.1mRNA_P-canaliculata_contig98995.24016.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig98995 60..638 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig98995.24016.1 ID=prot_P-canaliculata_contig98995.24016.1|Name=mRNA_P-canaliculata_contig98995.24016.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=193bp
FTFTRNKNDIYKTLIDRSAVKVRHLLGPSRFKSVLQHIAVAIWHSGDRAI
PLSEIYDSIENADVQAAFQALNLQGRDAAPPPDLSLTAIYFAPPQEGASS
DQSVAEFAHKSFSEYLVSASLFDSFTRLISAFETGDNFKTALRHWVRQAS
EGDHDPGLADFCQKEAGLRFESLSELDWNTALPILKSHMKLSH
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