mRNA_P-canaliculata_contig98995.24016.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98995.24016.1
Unique NamemRNA_P-canaliculata_contig98995.24016.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98995.24016.1 vs. uniprot
Match: UPI0016757E35 (pentapeptide repeat-containing protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0016757E35)

HSP 1 Score: 121 bits (304), Expect = 1.630e-28
Identity = 67/195 (34.36%), Postives = 113/195 (57.95%), Query Frame = 1 
Query:    4 TFTRNKNDIYKTLIDR----SAVKVRHLLGP----SRFKSVLQHIAVAIWHSG-DRAIPLSEIYDSIENADVQAAFQALNLQGRDAAPPPDLSLTAIYFAPPQEGASSDQSVAEFAHKSFSEYLVSASLFDSFTRLISAFETGDNFKTALRHWVRQASEGDHDPGLADFCQKEAGLRFESLSELDWNTALPILKS 561
            T+ +NKN +Y  +ID+    S  ++  L  P      F+++LQHIA+A W  G    I + ++  SI++   +  F++L+     +   P  +L+ +++      + S+++V  F HK+FS+YL+S  +FD+F  LIS F  G +F  AL +W+   +    DP +ADFC+ EA LR++ L  LDW+TAL +LK+
Sbjct:  419 TYVKNKNSVYDAIIDQVRQESIWRIETLKNPILEKDDFRAILQHIALANWKGGAGHQISVRQVERSIKDKRTRKIFRSLSFYSSPSRDDPTDNLSTVFYY--GLNSPSEENVLTFTHKTFSDYLLSTLIFDAFIYLISCFSRGHDFDRALSNWLSICAAKSQDPSIADFCEHEAKLRYDDLDNLDWDTALQLLKA 611
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98995.24016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0016757E351.630e-2834.36pentapeptide repeat-containing protein n=1 Tax=Lit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98995contigP-canaliculata_contig98995:60..638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue6e-07
Seed eggNOG ortholog91464.S7335_647
EggNOG free text desc.low-complexity proteins
EggNOG OGs1G7PE@1117,1H0RN@1129,COG1357@1,COG1357@2,COG5635@1,COG5635@2
COG Functional cat.T
Best tax levelSynechococcus
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.2272992-CDS-P-canaliculata_contig98995:59..6381622817351.2272992-CDS-P-canaliculata_contig98995:59..638Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98995 60..638 +
1693495240.7164192-CDS-P-canaliculata_contig98995:59..6381693495240.7164192-CDS-P-canaliculata_contig98995:59..638Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98995 60..638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98995.24016.1prot_P-canaliculata_contig98995.24016.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98995 60..638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98995.24016.1

>prot_P-canaliculata_contig98995.24016.1 ID=prot_P-canaliculata_contig98995.24016.1|Name=mRNA_P-canaliculata_contig98995.24016.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=193bp
FTFTRNKNDIYKTLIDRSAVKVRHLLGPSRFKSVLQHIAVAIWHSGDRAI
PLSEIYDSIENADVQAAFQALNLQGRDAAPPPDLSLTAIYFAPPQEGASS
DQSVAEFAHKSFSEYLVSASLFDSFTRLISAFETGDNFKTALRHWVRQAS
EGDHDPGLADFCQKEAGLRFESLSELDWNTALPILKSHMKLSH
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mRNA from alignment at P-canaliculata_contig98995:60..638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98995.24016.1 ID=mRNA_P-canaliculata_contig98995.24016.1|Name=mRNA_P-canaliculata_contig98995.24016.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=579bp|location=Sequence derived from alignment at P-canaliculata_contig98995:60..638+ (Pelvetia canaliculata dioecious)
TTCACCTTCACGAGGAATAAGAACGATATCTATAAAACTTTAATCGACCG
CTCGGCAGTAAAGGTTCGACATCTATTGGGCCCTTCCCGATTTAAATCGG
TGCTTCAACATATCGCGGTGGCTATTTGGCATTCGGGCGACAGGGCCATT
CCTTTGAGCGAGATATACGACTCAATTGAGAATGCTGACGTGCAGGCCGC
CTTTCAAGCATTAAACCTGCAAGGACGCGACGCCGCACCGCCTCCGGATC
TTTCATTAACCGCCATCTATTTTGCGCCTCCACAGGAGGGGGCATCATCG
GATCAAAGCGTGGCGGAATTCGCGCATAAGAGCTTCTCAGAATATCTGGT
TAGCGCGTCCCTCTTTGACAGTTTCACGCGCCTTATCTCGGCCTTTGAAA
CAGGCGATAATTTTAAGACCGCGTTGAGACATTGGGTCCGCCAAGCTTCT
GAAGGCGACCACGATCCCGGCTTGGCTGACTTTTGCCAGAAGGAGGCGGG
GTTACGGTTTGAGTCGCTGTCAGAGCTGGATTGGAATACGGCTCTCCCCA
TACTCAAATCACATATGAAACTAAGCCAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig98995:60..638+

>mRNA_P-canaliculata_contig98995.24016.1 ID=mRNA_P-canaliculata_contig98995.24016.1|Name=mRNA_P-canaliculata_contig98995.24016.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at P-canaliculata_contig98995:60..638+ (Pelvetia canaliculata dioecious)
TTCACCTTCACGAGGAATAAGAACGATATCTATAAAACTTTAATCGACCG
CTCGGCAGTAAAGGTTCGACATCTATTGGGCCCTTCCCGATTTAAATCGG
TGCTTCAACATATCGCGGTGGCTATTTGGCATTCGGGCGACAGGGCCATT
CCTTTGAGCGAGATATACGACTCAATTGAGAATGCTGACGTGCAGGCCGC
CTTTCAAGCATTAAACCTGCAAGGACGCGACGCCGCACCGCCTCCGGATC
TTTCATTAACCGCCATCTATTTTGCGCCTCCACAGGAGGGGGCATCATCG
GATCAAAGCGTGGCGGAATTCGCGCATAAGAGCTTCTCAGAATATCTGGT
TAGCGCGTCCCTCTTTGACAGTTTCACGCGCCTTATCTCGGCCTTTGAAA
CAGGCGATAATTTTAAGACCGCGTTGAGACATTGGGTCCGCCAAGCTTCT
GAAGGCGACCACGATCCCGGCTTGGCTGACTTTTGCCAGAAGGAGGCGGG
GTTACGGTTTGAGTCGCTGTCAGAGCTGGATTGGAATACGGCTCTCCCCA
TACTCAAATCACATATGAAACTAAGCCATTTCACCTTCACGAGGAATAAG
AACGATATCTATAAAACTTTAATCGACCGCTCGGCAGTAAAGGTTCGACA
TCTATTGGGCCCTTCCCGATTTAAATCGGTGCTTCAACATATCGCGGTGG
CTATTTGGCATTCGGGCGACAGGGCCATTCCTTTGAGCGAGATATACGAC
TCAATTGAGAATGCTGACGTGCAGGCCGCCTTTCAAGCATTAAACCTGCA
AGGACGCGACGCCGCACCGCCTCCGGATCTTTCATTAACCGCCATCTATT
TTGCGCCTCCACAGGAGGGGGCATCATCGGATCAAAGCGTGGCGGAATTC
GCGCATAAGAGCTTCTCAGAATATCTGGTTAGCGCGTCCCTCTTTGACAG
TTTCACGCGCCTTATCTCGGCCTTTGAAACAGGCGATAATTTTAAGACCG
CGTTGAGACATTGGGTCCGCCAAGCTTCTGAAGGCGACCACGATCCCGGC
TTGGCTGACTTTTGCCAGAAGGAGGCGGGGTTACGGTTTGAGTCGCTGTC
AGAGCTGGATTGGAATACGGCTCTCCCCATACTCAAATCACATATGAAAC
TAAGCCAT
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