prot_P-canaliculata_contig9853.23964.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9853.23964.1
Unique Nameprot_P-canaliculata_contig9853.23964.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length401
Homology
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: D8LI40_ECTSI (A to I editase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI40_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.460e-19
Identity = 118/401 (29.43%), Postives = 167/401 (41.65%), Query Frame = 0
Query:   22 QVLARRALMLRFWKELFLVMSQS---KRNPSSDAVEGS---FRAGSEAITALPAQEYRGVEAE----PLLYAGV-PLDDDRMLLLLE--PTAKGA-----WRVKSTLRLHLYVSDPPCGDASIYQQPVESPPHHGLRSSPFESDHIHGGGASTCCGEGGAERETRETSAFSCSEMKCVANQPSLAEFFHSSTSSISNKFEMEKNREMGECNNPGEGCHEKNGECCCDXXXGGDGGNDREINFKPTPRGDERKSCDRTKKGHRCNVPDATGPSVLNLSSSYQCRCPYPTVEKSRDRGDGRSSLGERDRADKMTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ----VSWL 400
            +VLARRAL+LR W+EL L +S +   +++ + D  +G      +G     + P+        +    P LY GV P +DD  +LLLE  P A  A     WR+K  +RLHLY+SD PCGDASIY+Q  ++P             ++ GGG++ C   GG + +    S++         + P                  +  +R  GE    G+                               RGD +++        RC V      ++  LS +     P P +    +R    +SL   D                K R+                          +EQ +GALRIKSSRSNISEEGRT+SMSCSDKL+KWA LGVQ     SW+
Sbjct:   89 EVLARRALLLRLWRELHLRVSSAAGRQQDVTIDERKGGGTPCNSGRSDGRSTPSSSTTAATVDAHPQPPLYGGVLPGEDDGRILLLERSPQATDAGACISWRLKPYIRLHLYISDAPCGDASIYEQKRQAP-------------NVGGGGSARC---GGGDGDPGNDSSWD----DAPRSTP------------------LAGSRSDGERRGRGD-----------------------------ADRGDAKRA--------RCAV------AIAGLSDAV-APSPRPDLPLDEERSCSAASLNPLD---------------CKPREP-------------------------EEQQVGALRIKSSRSNISEEGRTMSMSCSDKLAKWAFLGVQGGLLASWV 367          
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A7S3LDF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDF6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.420e-8
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 0
Query:  314 MTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTL--RIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 396
            + FTGAK+I + +E   + ++ G     GG E  L    R+ RE+ QLLG LR KS RSN+    R+ S+SCSDK+ +W VLG+Q
Sbjct:   29 LQFTGAKVIVS-QETKVSVQDCG-----GGSEASLLQDSRVARERVQLLGRLRTKSGRSNLQAHQRSDSLSCSDKIVRWCVLGLQ 107          
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: K0R2A8_THAOC (A to I editase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2A8_THAOC)

HSP 1 Score: 63.5 bits (153), Expect = 2.880e-7
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 0
Query:  314 MTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 396
            + FTGAKII +  E   T             EG++ +R+ REQ Q++  LR+KSSRSNI  + R++S+ C+DK+ +W+V G+Q
Sbjct:  194 VNFTGAKIILSGGEEHQTTNITSLQEE---PEGEVKVRLGREQVQIVKKLRVKSSRSNIPNKMRSMSLCCADKIVRWSVFGLQ 273          
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A835ZEK1_9STRA (A to I editase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.020e-5
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0
Query:  346 GDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 396
            G   L ++RE  Q +G LR+KS RS++  E RT SMSCSDKL++WAVLG+Q
Sbjct:  274 GAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQ 324          
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: B7FPV9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPV9_PHATC)

HSP 1 Score: 57.0 bits (136), Expect = 2.570e-5
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 0
Query:  314 MTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTLR---IDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 396
            + +TGAK+I + +    T ++ G  ++L             + RE  QLLG LR K+ RSNI    R+ SMSCSDK+ +W VLG+Q
Sbjct:  170 LQYTGAKVIVS-EHTKVTGKDCGGDHQLLLKSSSAIFSSSYVAREDVQLLGKLRTKAGRSNIEAARRSTSMSCSDKIVRWMVLGLQ 254          
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A1Z5KAH5_FISSO (tRNA-specific adenosine deaminase 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAH5_FISSO)

HSP 1 Score: 57.4 bits (137), Expect = 2.650e-5
Identity = 37/109 (33.94%), Postives = 57/109 (52.29%), Query Frame = 0
Query:  289 YPT-VEKSRDRGDGRSSLGERDRADKMTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 396
            YP  V   + + D +S+      ++ + FTGAK+I +  +        G + +    +  L   +   Q Q +G LR KS RSN+    R+ SMSCSDKL +W+VLG+Q
Sbjct:  147 YPVRVNDDKSKSDNKSTNNTHPPSE-LLFTGAKVIVSSSDATEVAETGGPLLQSHNSQQHL---VREPQAQSVGQLRSKSGRSNLESSRRSFSMSCSDKLVRWSVLGLQ 251          
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A7S2U6Z4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6Z4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.420e-5
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 0
Query:  322 IAAVKERDATDREFGAVNRLGGMEGDLTLRIDRE-QEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQVSWL 400
            +A + +  A+ R+     + GG  G     + RE  EQ+LGALR KS RSN+    R+ SMSCSDKL +W +LG+Q S L
Sbjct:  311 LAVLPQTSASTRDGDMDGKGGGCAG-----VAREPNEQILGALRTKSGRSNLPAHLRSTSMSCSDKLVRWGILGLQGSLL 385          
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A7S3PX48_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX48_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.150e-5
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 0
Query:  314 MTFTGAKIIA---AVKERDATDRE----FGAVNRLGGMEGDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQVS 398
            + FTGAKII      K+R A +       G V     ++      I RE+ Q+  ALR+KS RSN+    R  SMSCSDKL KW++LG+Q S
Sbjct:  215 VNFTGAKIIVPSECSKKRKAFESSNLTFCGNVKSSKEVDKREMSFIARERLQITSALRLKSGRSNLPAHMRCSSMSCSDKLCKWSILGLQGS 306          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LI40_ECTSI3.460e-1929.43A to I editase domain-containing protein n=2 Tax=E... [more]
A0A7S3LDF6_9STRA3.420e-844.71Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
K0R2A8_THAOC2.880e-740.96A to I editase domain-containing protein n=1 Tax=T... [more]
A0A835ZEK1_9STRA1.020e-556.86A to I editase domain-containing protein n=1 Tax=T... [more]
B7FPV9_PHATC2.570e-539.53Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5KAH5_FISSO2.650e-533.94tRNA-specific adenosine deaminase 1 n=1 Tax=Fistul... [more]
A0A7S2U6Z4_9STRA3.420e-543.75Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3PX48_9STRA5.150e-542.39Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002466Adenosine deaminase/editasePFAMPF02137A_deamincoord: 97..396
e-value: 9.7E-16
score: 58.1
IPR002466Adenosine deaminase/editasePROSITEPS50141A_DEAMIN_EDITASEcoord: 377..400
score: 8.911
NoneNo IPR availablePANTHERPTHR10910EUKARYOTE SPECIFIC DSRNA BINDING PROTEINcoord: 23..143
coord: 372..398

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9853contigP-canaliculata_contig9853:352..2448 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9853.23964.1mRNA_P-canaliculata_contig9853.23964.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9853 70..2687 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9853.23964.1 ID=prot_P-canaliculata_contig9853.23964.1|Name=mRNA_P-canaliculata_contig9853.23964.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=401bp
MDVERVDTEQDGRTRHARPNFQVLARRALMLRFWKELFLVMSQSKRNPSS
DAVEGSFRAGSEAITALPAQEYRGVEAEPLLYAGVPLDDDRMLLLLEPTA
KGAWRVKSTLRLHLYVSDPPCGDASIYQQPVESPPHHGLRSSPFESDHIH
GGGASTCCGEGGAERETRETSAFSCSEMKCVANQPSLAEFFHSSTSSISN
KFEMEKNREMGECNNPGEGCHEKNGECCCDDCCGGDGGNDREINFKPTPR
GDERKSCDRTKKGHRCNVPDATGPSVLNLSSSYQCRCPYPTVEKSRDRGD
GRSSLGERDRADKMTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTL
RIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQVSWL
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002466A_deamin