mRNA_P-canaliculata_contig9853.23964.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: D8LI40_ECTSI (A to I editase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI40_ECTSI) HSP 1 Score: 100 bits (248), Expect = 2.340e-18 Identity = 118/401 (29.43%), Postives = 167/401 (41.65%), Query Frame = 3 Query: 303 QVLARRALMLRFWKELFLVMSQS---KRNPSSDAVEGS---FRAGSEAITALPAQEYRGVEAE----PLLYAGV-PLDDDRMLLLLE--PTAKGA-----WRVKSTLRLHLYVSDPPCGDASIYQQPVESPPHHGLRSSPFESDHIHGGGASTCCGEGGAERETRETSAFSCSEMKCVANQPSLAEFFHSSTSSISNKFEMEKNREMGECNNPGEGCHEKNGECCCDXXXGGDGGNDREINFKPTPRGDERKSCDRTKKGHRCNVPDATGPSVLNLSSSYQCRCPYPTVEKSRDRGDGRSSLGERDRADKMTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ----VSWL 1439
+VLARRAL+LR W+EL L +S + +++ + D +G +G + P+ + P LY GV P +DD +LLLE P A A WR+K +RLHLY+SD PCGDASIY+Q ++P ++ GGG++ C GG + + S++ + P + +R GE G+ RGD +++ RC V ++ LS + P P + +R +SL D K R+ +EQ +GALRIKSSRSNISEEGRT+SMSCSDKL+KWA LGVQ SW+
Sbjct: 89 EVLARRALLLRLWRELHLRVSSAAGRQQDVTIDERKGGGTPCNSGRSDGRSTPSSSTTAATVDAHPQPPLYGGVLPGEDDGRILLLERSPQATDAGACISWRLKPYIRLHLYISDAPCGDASIYEQKRQAP-------------NVGGGGSARC---GGGDGDPGNDSSWD----DAPRSTP------------------LAGSRSDGERRGRGD-----------------------------ADRGDAKRA--------RCAV------AIAGLSDAV-APSPRPDLPLDEERSCSAASLNPLD---------------CKPREP-------------------------EEQQVGALRIKSSRSNISEEGRTMSMSCSDKLAKWAFLGVQGGLLASWV 367
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A7S3LDF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDF6_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 7.450e-8 Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 3 Query: 1179 MTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTL--RIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 1427
+ FTGAK+I + +E + ++ G GG E L R+ RE+ QLLG LR KS RSN+ R+ S+SCSDK+ +W VLG+Q
Sbjct: 29 LQFTGAKVIVS-QETKVSVQDCG-----GGSEASLLQDSRVARERVQLLGRLRTKSGRSNLQAHQRSDSLSCSDKIVRWCVLGLQ 107
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: K0R2A8_THAOC (A to I editase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2A8_THAOC) HSP 1 Score: 63.2 bits (152), Expect = 7.870e-7 Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 3 Query: 1179 MTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 1427
+ FTGAKII + E T EG++ +R+ REQ Q++ LR+KSSRSNI + R++S+ C+DK+ +W+V G+Q
Sbjct: 194 VNFTGAKIILSGGEEHQTTNITSLQEE---PEGEVKVRLGREQVQIVKKLRVKSSRSNIPNKMRSMSLCCADKIVRWSVFGLQ 273
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A835ZEK1_9STRA (A to I editase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK1_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 2.050e-5 Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 3 Query: 1275 GDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQVSWL*ASIDRRPRLL*NIRNRVTLRALEDVK 1520
G L ++RE Q +G LR+KS RS++ E RT SMSCSDKL++WAVLG+Q L ++ P LL ++ RA D +
Sbjct: 274 GAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLE--PVLLSSVTVSADARAAPDAQ 353
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: B7FPV9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPV9_PHATC) HSP 1 Score: 56.6 bits (135), Expect = 6.250e-5 Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 3 Query: 1179 MTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTLR---IDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 1427
+ +TGAK+I + + T ++ G ++L + RE QLLG LR K+ RSNI R+ SMSCSDK+ +W VLG+Q
Sbjct: 170 LQYTGAKVIVS-EHTKVTGKDCGGDHQLLLKSSSAIFSSSYVAREDVQLLGKLRTKAGRSNIEAARRSTSMSCSDKIVRWMVLGLQ 254
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A1Z5KAH5_FISSO (tRNA-specific adenosine deaminase 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAH5_FISSO) HSP 1 Score: 57.0 bits (136), Expect = 6.740e-5 Identity = 37/109 (33.94%), Postives = 57/109 (52.29%), Query Frame = 3 Query: 1104 YPT-VEKSRDRGDGRSSLGERDRADKMTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 1427
YP V + + D +S+ ++ + FTGAK+I + + G + + + L + Q Q +G LR KS RSN+ R+ SMSCSDKL +W+VLG+Q
Sbjct: 147 YPVRVNDDKSKSDNKSTNNTHPPSE-LLFTGAKVIVSSSDATEVAETGGPLLQSHNSQQHL---VREPQAQSVGQLRSKSGRSNLESSRRSFSMSCSDKLVRWSVLGLQ 251
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A7S2U6Z4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6Z4_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 6.770e-5 Identity = 38/90 (42.22%), Postives = 51/90 (56.67%), Query Frame = 3 Query: 1203 IAAVKERDATDREFGAVNRLGGMEGDLTLRIDRE-QEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQVSWL*ASIDRRPRL 1469
+A + + A+ R+ + GG G + RE EQ+LGALR KS RSN+ R+ SMSCSDKL +W +LG+Q S L I RL
Sbjct: 311 LAVLPQTSASTRDGDMDGKGGGCAG-----VAREPNEQILGALRTKSGRSNLPAHLRSTSMSCSDKLVRWGILGLQGSLLSRYIPHAIRL 395
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A7S3PX48_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX48_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 9.940e-5 Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 3 Query: 1179 MTFTGAKIIA---AVKERDATDRE----FGAVNRLGGMEGDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQVSWL*ASIDRRP 1463
+ FTGAKII K+R A + G V ++ I RE+ Q+ ALR+KS RSN+ R SMSCSDKL KW++LG+Q S + + + P
Sbjct: 215 VNFTGAKIIVPSECSKKRKAFESSNLTFCGNVKSSKEVDKREMSFIARERLQITSALRLKSGRSNLPAHMRCSSMSCSDKLCKWSILGLQGSGFLSCLLKNP 316 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9853.23964.1 >prot_P-canaliculata_contig9853.23964.1 ID=prot_P-canaliculata_contig9853.23964.1|Name=mRNA_P-canaliculata_contig9853.23964.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=401bp MDVERVDTEQDGRTRHARPNFQVLARRALMLRFWKELFLVMSQSKRNPSSback to top mRNA from alignment at P-canaliculata_contig9853:70..2687- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9853.23964.1 ID=mRNA_P-canaliculata_contig9853.23964.1|Name=mRNA_P-canaliculata_contig9853.23964.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2618bp|location=Sequence derived from alignment at P-canaliculata_contig9853:70..2687- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9853:70..2687- >mRNA_P-canaliculata_contig9853.23964.1 ID=mRNA_P-canaliculata_contig9853.23964.1|Name=mRNA_P-canaliculata_contig9853.23964.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2406bp|location=Sequence derived from alignment at P-canaliculata_contig9853:70..2687- (Pelvetia canaliculata dioecious)back to top |