prot_P-canaliculata_contig9837.23940.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9837.23940.1
Unique Nameprot_P-canaliculata_contig9837.23940.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length112
Homology
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 2.430e-52
Identity = 81/112 (72.32%), Postives = 91/112 (81.25%), Query Frame = 0
Query:    1 LGGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 112
            +GGDCDELRIQSTG T+FHEVR HGGS+YFEST VTSWDT  + PQ  Y  GRSF+NCVSE      C G +QN+ GECRMDIINSE+GYLGY +SESYGLTWKVRGFC D+
Sbjct:  149 IGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDL 260          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 4.410e-51
Identity = 76/111 (68.47%), Postives = 90/111 (81.08%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 112
            GGDCDELRIQSTG  +++EVRGHGGS+YF  T VTSWDT  + PQ  YE GRSF+NCVSE      C+G ++ND GECRMDIINSEMGY+G+ ++ESYGLTWKVRGFC D+
Sbjct:   41 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDL 151          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 6.960e-50
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 112
            GGDC++LRIQSTGS +FHEVRGHGGSLYFE T VTSWDT  + PQ  YE GRSF+NCVSE     +CEG ++N+ GECRMDIINSE+ YLGY +SESYG+TWKVRGFC D+
Sbjct:  513 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDL 623          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 7.340e-50
Identity = 79/119 (66.39%), Postives = 92/119 (77.31%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWK--------VRGFCVDM 112
            GGDC++LRIQSTGS +FHEVRGHGGSLYFE T VTSWDT  + PQ  YE GRSF+NCVSE     +CEG ++N+ GECRMDIINSE+ YLGY +SESYG+TWK        VRGFC D+
Sbjct:   62 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDL 180          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.100e-48
Identity = 78/120 (65.00%), Postives = 91/120 (75.83%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVR---------GFCVDM 112
            GGDCDELRIQSTG  +++EVRGHGGS+YF  T VTSWDT  + PQ  YE GRSF+NCVSE      C+GM++ND GECRMDIINSEMGY+G+ +SESYGLTWKVR         GFC D+
Sbjct:   86 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDL 205          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D7FZV0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV0_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 4.530e-46
Identity = 70/112 (62.50%), Postives = 86/112 (76.79%), Query Frame = 0
Query:    1 LGGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 112
            +GG+C ELRI+ST  ++F E+RGHGG+LYFE T VTSWD D R PQ  Y+ GRSFI CVSE       +  + N+ GECRMDII+SEMGYLGY+ SE+YG+TWKVRGFC D+
Sbjct:    3 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKGGRSFIRCVSEVLTGE--DTCAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDL 112          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 6.130e-43
Identity = 70/112 (62.50%), Postives = 87/112 (77.68%), Query Frame = 0
Query:    1 LGGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 112
            +GG+C ELRI+ST  ++F E+RGHGG+LYFE T VTSWD D R PQ  Y++GRSFI CVSE       +  + N+ GECRMDII+SEMGYLGY+ SE+YG+TWKVRGFC D+
Sbjct:   74 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGE--DTCAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDL 183          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.840e-36
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTV--NCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVD 111
            GGD   LRIQSTGS +++E+RGHGGSL F  T VTSWDTD +   T+Y++ RSFI CVSE        C+G + N  GECRMDII SEMG +GY+ +ESYG++WKVRG+C +
Sbjct:  466 GGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSE 577          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 5.200e-36
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYE--EGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 112
            GGDCD LRI+STGS  + E+ GHGG++YFE T VTSWDT ++  + +Y+  EGRSFI C+++Y    +C G S  D G CRMDII+S MG +GY+ SESYGLTWKVRG C ++
Sbjct:  311 GGDCDVLRIESTGS-KYWEIFGHGGNMYFEGTKVTSWDT-SKGKEREYKKNEGRSFIRCITQYDDNYSCSGGSNKDMGTCRMDIIDSTMGNMGYDASESYGLTWKVRGLCKNL 421          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.840e-35
Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEY--APTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 112
            GGD D LRIQST   +F E+RG GGSL F  TTVTSWDTD    +T+YE GRSFINCV+++  +   +C G S  + GECRMDII+S MG +G+ ++ESYGLTWKVRG C D+
Sbjct:  476 GGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDL 587          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI2.430e-5272.32Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FIU4_ECTSI4.410e-5168.47Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LC73_ECTSI6.960e-5071.17Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5KWQ2_9PHAE7.340e-5066.39MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JGU8_9PHAE1.100e-4865.00MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FZV0_ECTSI4.530e-4662.50Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI6.130e-4362.50Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF5_9PHAE2.840e-3658.04MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LRN0_ECTSI5.200e-3657.52Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FWE8_ECTSI1.840e-3559.29Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 1..111
e-value: 5.9E-25
score: 89.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9837contigP-canaliculata_contig9837:3905..4240 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9837.23940.1mRNA_P-canaliculata_contig9837.23940.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9837 3905..4240 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9837.23940.1 ID=prot_P-canaliculata_contig9837.23940.1|Name=mRNA_P-canaliculata_contig9837.23940.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=112bp
LGGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYE
EGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYG
LTWKVRGFCVDM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold