mRNA_P-canaliculata_contig9837.23940.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9837.23940.1
Unique NamemRNA_P-canaliculata_contig9837.23940.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 2.430e-52
Identity = 81/112 (72.32%), Postives = 91/112 (81.25%), Query Frame = 1
Query:    1 LGGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 336
            +GGDCDELRIQSTG T+FHEVR HGGS+YFEST VTSWDT  + PQ  Y  GRSF+NCVSE      C G +QN+ GECRMDIINSE+GYLGY +SESYGLTWKVRGFC D+
Sbjct:  149 IGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDL 260          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 4.410e-51
Identity = 76/111 (68.47%), Postives = 90/111 (81.08%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 336
            GGDCDELRIQSTG  +++EVRGHGGS+YF  T VTSWDT  + PQ  YE GRSF+NCVSE      C+G ++ND GECRMDIINSEMGY+G+ ++ESYGLTWKVRGFC D+
Sbjct:   41 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDL 151          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 6.960e-50
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 336
            GGDC++LRIQSTGS +FHEVRGHGGSLYFE T VTSWDT  + PQ  YE GRSF+NCVSE     +CEG ++N+ GECRMDIINSE+ YLGY +SESYG+TWKVRGFC D+
Sbjct:  513 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDL 623          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 7.340e-50
Identity = 79/119 (66.39%), Postives = 92/119 (77.31%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWK--------VRGFCVDM 336
            GGDC++LRIQSTGS +FHEVRGHGGSLYFE T VTSWDT  + PQ  YE GRSF+NCVSE     +CEG ++N+ GECRMDIINSE+ YLGY +SESYG+TWK        VRGFC D+
Sbjct:   62 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDL 180          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.100e-48
Identity = 78/120 (65.00%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVR---------GFCVDM 336
            GGDCDELRIQSTG  +++EVRGHGGS+YF  T VTSWDT  + PQ  YE GRSF+NCVSE      C+GM++ND GECRMDIINSEMGY+G+ +SESYGLTWKVR         GFC D+
Sbjct:   86 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDL 205          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D7FZV0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV0_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 4.530e-46
Identity = 70/112 (62.50%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    1 LGGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 336
            +GG+C ELRI+ST  ++F E+RGHGG+LYFE T VTSWD D R PQ  Y+ GRSFI CVSE       +  + N+ GECRMDII+SEMGYLGY+ SE+YG+TWKVRGFC D+
Sbjct:    3 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKGGRSFIRCVSEVLTGE--DTCAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDL 112          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 6.130e-43
Identity = 70/112 (62.50%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    1 LGGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 336
            +GG+C ELRI+ST  ++F E+RGHGG+LYFE T VTSWD D R PQ  Y++GRSFI CVSE       +  + N+ GECRMDII+SEMGYLGY+ SE+YG+TWKVRGFC D+
Sbjct:   74 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGE--DTCAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDL 183          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.840e-36
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEYAPTV--NCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVD 333
            GGD   LRIQSTGS +++E+RGHGGSL F  T VTSWDTD +   T+Y++ RSFI CVSE        C+G + N  GECRMDII SEMG +GY+ +ESYG++WKVRG+C +
Sbjct:  466 GGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSE 577          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 5.200e-36
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYE--EGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 336
            GGDCD LRI+STGS  + E+ GHGG++YFE T VTSWDT ++  + +Y+  EGRSFI C+++Y    +C G S  D G CRMDII+S MG +GY+ SESYGLTWKVRG C ++
Sbjct:  311 GGDCDVLRIESTGS-KYWEIFGHGGNMYFEGTKVTSWDT-SKGKEREYKKNEGRSFIRCITQYDDNYSCSGGSNKDMGTCRMDIIDSTMGNMGYDASESYGLTWKVRGLCKNL 421          
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.840e-35
Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYEEGRSFINCVSEY--APTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYGLTWKVRGFCVDM 336
            GGD D LRIQST   +F E+RG GGSL F  TTVTSWDTD    +T+YE GRSFINCV+++  +   +C G S  + GECRMDII+S MG +G+ ++ESYGLTWKVRG C D+
Sbjct:  476 GGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDL 587          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9837.23940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI2.430e-5272.32Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FIU4_ECTSI4.410e-5168.47Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LC73_ECTSI6.960e-5071.17Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5KWQ2_9PHAE7.340e-5066.39MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JGU8_9PHAE1.100e-4865.00MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FZV0_ECTSI4.530e-4662.50Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI6.130e-4362.50Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF5_9PHAE2.840e-3658.04MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LRN0_ECTSI5.200e-3657.52Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FWE8_ECTSI1.840e-3559.29Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9837contigP-canaliculata_contig9837:3905..4240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue1.1e-42
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.1489527-CDS-P-canaliculata_contig9837:3904..42401622817345.1489527-CDS-P-canaliculata_contig9837:3904..4240Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9837 3905..4240 +
1693495236.6915767-CDS-P-canaliculata_contig9837:3904..42401693495236.6915767-CDS-P-canaliculata_contig9837:3904..4240Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9837 3905..4240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9837.23940.1prot_P-canaliculata_contig9837.23940.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9837 3905..4240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9837.23940.1

>prot_P-canaliculata_contig9837.23940.1 ID=prot_P-canaliculata_contig9837.23940.1|Name=mRNA_P-canaliculata_contig9837.23940.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=112bp
LGGDCDELRIQSTGSTNFHEVRGHGGSLYFESTTVTSWDTDTRLPQTDYE
EGRSFINCVSEYAPTVNCEGMSQNDYGECRMDIINSEMGYLGYNNSESYG
LTWKVRGFCVDM
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mRNA from alignment at P-canaliculata_contig9837:3905..4240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9837.23940.1 ID=mRNA_P-canaliculata_contig9837.23940.1|Name=mRNA_P-canaliculata_contig9837.23940.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at P-canaliculata_contig9837:3905..4240+ (Pelvetia canaliculata dioecious)
CTTGGGGGTGACTGCGACGAGCTTCGTATCCAGTCGACGGGATCCACGAA CTTTCATGAGGTCAGGGGTCATGGAGGCAGTCTATACTTCGAGAGCACCA CCGTGACTTCGTGGGACACAGACACAAGGTTGCCGCAGACAGATTATGAA GAAGGGCGCTCGTTCATCAACTGTGTCTCCGAGTACGCTCCAACGGTGAA CTGTGAAGGCATGTCCCAGAACGACTACGGTGAGTGCCGCATGGACATCA TAAACTCTGAGATGGGTTACCTGGGCTACAATAACTCGGAGTCGTATGGA TTAACCTGGAAGGTCCGCGGCTTCTGCGTTGACATG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9837:3905..4240+

>mRNA_P-canaliculata_contig9837.23940.1 ID=mRNA_P-canaliculata_contig9837.23940.1|Name=mRNA_P-canaliculata_contig9837.23940.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at P-canaliculata_contig9837:3905..4240+ (Pelvetia canaliculata dioecious)
CTTGGGGGTGACTGCGACGAGCTTCGTATCCAGTCGACGGGATCCACGAA
CTTTCATGAGGTCAGGGGTCATGGAGGCAGTCTATACTTCGAGAGCACCA
CCGTGACTTCGTGGGACACAGACACAAGGTTGCCGCAGACAGATTATGAA
GAAGGGCGCTCGTTCATCAACTGTGTCTCCGAGTACGCTCCAACGGTGAA
CTGTGAAGGCATGTCCCAGAACGACTACGGTGAGTGCCGCATGGACATCA
TAAACTCTGAGATGGGTTACCTGGGCTACAATAACTCGGAGTCGTATGGA
TTAACCTGGAAGGTCCGCGGCTTCTGCGTTGACATGCTTGGGGGTGACTG
CGACGAGCTTCGTATCCAGTCGACGGGATCCACGAACTTTCATGAGGTCA
GGGGTCATGGAGGCAGTCTATACTTCGAGAGCACCACCGTGACTTCGTGG
GACACAGACACAAGGTTGCCGCAGACAGATTATGAAGAAGGGCGCTCGTT
CATCAACTGTGTCTCCGAGTACGCTCCAACGGTGAACTGTGAAGGCATGT
CCCAGAACGACTACGGTGAGTGCCGCATGGACATCATAAACTCTGAGATG
GGTTACCTGGGCTACAATAACTCGGAGTCGTATGGATTAACCTGGAAGGT
CCGCGGCTTCTGCGTTGACATG
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